Molecular transport through channels and pores: Effects of in-channel interactions and blocking

Proceedings of the National Academy of Sciences of the United States of America

Volumn 103, Issue 31, 2006, Pages 11446-11451

  Bauer, Wolfgang R ^a   Nadler, Walter ^b  

^a UNIVERSITY HOSPITAL WÜRZBURG   (Germany)

^b MICHIGAN TECHNOLOGICAL UNIVERSITY   (United States)

Author keywords

Binding site; First passage time; Membrane

Indexed keywords

ARTICLE; BINDING AFFINITY; BINDING SITE; FACILITATION; MEMBRANE CHANNEL; MEMBRANE TRANSPORT; MOLECULAR INTERACTION; POROSITY; PRIORITY JOURNAL;

BINDING SITES; BIOLOGICAL TRANSPORT; BIOPHYSICS; ION CHANNELS; MATHEMATICS; MODELS, THEORETICAL;

EID: 33746786931     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0601769103     Document Type: Article

References (28)

1. Cooper, K. E., Jakobsson, E. & Wolynes, P. (1985) Prog. Biophys. Mol. Biol. 46, 51-96.
2. Meller, A. (2003) J. Phys. Condens. Matter 15, R581-R607.
3. Cooper, K. E., Gates, P. Y. & Eisenberg, R. S. (1988) Q. Rev. Biophys. 21, 331-364.
4. Ebel, W. (1985) J. Math. Biol. 21, 243-271.
5. Jensen, M. O., Park, S., Tajkorshid, E. & Schulten, K. (2002) Proc. Natl. Acad. Sci. USA 99, 6731-6736.
6. Grayson, P., Tajkorshid, E. & Schulten, K. (2003) Biophys. J. 85, 36-48.
7. Luckey, M. & Nikaido, H. (1980) Proc. Natl. Acad, Sci. USA 77, 167-171.
8. Benz, R., Schmid, A. & Vos-Scheperkeuter, G. H. (1987) J. Membr. Biol. 100, 21-29.
9. Bezrukov, S. M., Kullman, L. & Winterhalter, M. (2000) FEBS Lett. 476, 224-228.
10. Hilty, C. & Winterhalter, M. (2001) Phys. Rev. Lett. 86, 5624-5627.
11. Kullman, L., Winterhalter, M. & Bezrukov, S. M. (2002) Biophys. J. 82, 803-812.
12. Schwarz, G., Danelon, C. & Winterhalter, M. (2003) Biophys. J. 84, 2990-2998.
13. Nestorovich, E. M., Danelon, C., Winterhalter, M. & Bezrukov, S. M. (2002) Proc. Natl. Acad. Sci. USA 15, 9789-9794.
14. Berezhovskii, A. M. & Gopich, I. V. (2003) Biophys. J. 84, 787-793.
15. Berezhovskii, A. M., Pustovolt, M. A. & Bezrukov, S. M. (2002) J. Chem. Phys. 116, 9952-9955.
16. Berezhovskii, A. M., Pustovolt, M. A. & Bezrukov, S. M. (2003) J. Chem. Phys. 119, 3943-3951.
17. Gardiner, C. W. (2004) Handbook of Stochastic Methods for Physics, Chemistry and the Natural Sciences (Springer, Berlin), 3rd Ed., Chap. 5.2.8, p. 142.
18. van Kampen, N. G. (2001) Stochastic Processes in Physics and Chemistry (North-Holland, Amsterdam), pp. 292-325.
19. Agmon, N. (1985) J. Chem. Phys. 82, 2056-2060.
20. Berezhovskii, A. M. & Bezrukov, S. M. (2005) Biophys J. 104, L17-L19.
21. Berezhovskii, A. M. & Bezrukov, S. M. (2005) Chem. Phys. 319, 342-349.
22. Ludwig, D. (1981) in Nonlinear Phenomena in Physics and Biology, eds. Enns, R. H., Jones, B. L. & Miura, R. M. (Plenum, New York), pp. 549-566.
23. Hardt, S. (1981) Bull. Math. Biol. 43, 89-99.
24. Bauer, W. R. & Nadler W. (2005) J. Chem. Phys. 122, 244904.
25. Schulten, K., Schulten, Z. & Szabo, A. (1981) J. Chem. Phys. 74, 4426-4432.
26. Alcaraz, A., Nestorovich, E. M., Aguilella-Arzo, M., Aguilella, V. M. & Bezrukov, S. M. (2004) Biophys. J. 87, 943-957.
27. Nelson, P. H. (2002) J. Chem. Phys. 117, 11396-11403.
28. Kosztin, I. & Schulten, K. (2004) Phys. Rev. Lett. 93, 238102.