-
1
-
-
0036605185
-
Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome
-
Mann M., Ong S., Grønborg M., Steen H., Jensen O.N., and Pandey A. Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome. TiBtechniques 20 (2002) 261-268
-
(2002)
TiBtechniques
, vol.20
, pp. 261-268
-
-
Mann, M.1
Ong, S.2
Grønborg, M.3
Steen, H.4
Jensen, O.N.5
Pandey, A.6
-
2
-
-
0036652968
-
A mass spectrometry-based proteomic approach for identification of serine/threonine-phosphorylated proteins by enrichment with phospho-specific antibodies
-
Grønborg M., Kristiansen T.Z., Stensballe A., Andersen J.S., Ohara M., Mann M., Jensen O.N., and Pandey A. A mass spectrometry-based proteomic approach for identification of serine/threonine-phosphorylated proteins by enrichment with phospho-specific antibodies. Mol. Cell. Proteomics 1.7 (2002) 517-527
-
(2002)
Mol. Cell. Proteomics
, vol.1 7
, pp. 517-527
-
-
Grønborg, M.1
Kristiansen, T.Z.2
Stensballe, A.3
Andersen, J.S.4
Ohara, M.5
Mann, M.6
Jensen, O.N.7
Pandey, A.8
-
3
-
-
0035072715
-
A systematic approach to the analysis of protein phosphorylation
-
Zhou Z., Watts J.D., and Aebersold R. A systematic approach to the analysis of protein phosphorylation. Nat. Biotechnol. 19 (2001) 375-378
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 375-378
-
-
Zhou, Z.1
Watts, J.D.2
Aebersold, R.3
-
4
-
-
0036198435
-
Phosphoproteomic analysis by mass spectrometry and its application to Saccharomyces cerevisiae
-
Ficarro S.B., McCleland M.L., Stukenberg P.T., Burke D.J., Ross M.M., Shabanowitz J., Hunt D.F., and White F.M. Phosphoproteomic analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nat. Biotechnol. 20 (2002) 301-305
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 301-305
-
-
Ficarro, S.B.1
McCleland, M.L.2
Stukenberg, P.T.3
Burke, D.J.4
Ross, M.M.5
Shabanowitz, J.6
Hunt, D.F.7
White, F.M.8
-
5
-
-
28444487185
-
Enrichment of phosphorylated proteins and peptides from complex mixtures using metal oxide/hydroxide affinity chromatography (MOAC)
-
Wolschin F., Weinkoop S., and Weckwerth W. Enrichment of phosphorylated proteins and peptides from complex mixtures using metal oxide/hydroxide affinity chromatography (MOAC). Proteomics 5 (2005) 4389-4397
-
(2005)
Proteomics
, vol.5
, pp. 4389-4397
-
-
Wolschin, F.1
Weinkoop, S.2
Weckwerth, W.3
-
6
-
-
27744563093
-
State-of-the-art phosphoproteomics
-
Reinders J., and Sickmann A. State-of-the-art phosphoproteomics. Proteomics 5 (2005) 4052-4461
-
(2005)
Proteomics
, vol.5
, pp. 4052-4461
-
-
Reinders, J.1
Sickmann, A.2
-
7
-
-
0034954952
-
Directed proteomics identifies a plant-specific protein rapidly phosphorylated in response to bacterial and fungal elicitors
-
Peck S.C., Nühse T.S., Hess D., Iglesias A., Meins F., and Boller T. Directed proteomics identifies a plant-specific protein rapidly phosphorylated in response to bacterial and fungal elicitors. Plant Cell 13 (2001) 1467-1475
-
(2001)
Plant Cell
, vol.13
, pp. 1467-1475
-
-
Peck, S.C.1
Nühse, T.S.2
Hess, D.3
Iglesias, A.4
Meins, F.5
Boller, T.6
-
8
-
-
0038034950
-
Analysis of steady-state protein phosphorylation in mitochondria using a novel fluorescent phosphosensor dye
-
Schulenberg B., Aggeler R., Beechem J.M., Capaldi R.A., and Patton W.F. Analysis of steady-state protein phosphorylation in mitochondria using a novel fluorescent phosphosensor dye. J. Biol. Chem. 278 (2003) 27251-27255
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 27251-27255
-
-
Schulenberg, B.1
Aggeler, R.2
Beechem, J.M.3
Capaldi, R.A.4
Patton, W.F.5
-
9
-
-
0034923505
-
Analysis of proteins and proteomes by mass spectrometry
-
Mann M., Hendrickson R.C., and Pandey A. Analysis of proteins and proteomes by mass spectrometry. Annu. Rev. Biochem. 70 (2001) 437-473
-
(2001)
Annu. Rev. Biochem.
, vol.70
, pp. 437-473
-
-
Mann, M.1
Hendrickson, R.C.2
Pandey, A.3
-
10
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins D.N., Pappin D.J., Creasy D.M., and Cottrell J.S. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20 (1999) 3551-3567
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
11
-
-
0035298820
-
Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole tof mass spectrometry in positive ion mode
-
Steen H., Küster B., Fernandez M., Pandey A., and Mann M. Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole tof mass spectrometry in positive ion mode. Anal. Chem. 73 (2001) 1440-1448
-
(2001)
Anal. Chem.
, vol.73
, pp. 1440-1448
-
-
Steen, H.1
Küster, B.2
Fernandez, M.3
Pandey, A.4
Mann, M.5
-
12
-
-
20944441193
-
Proteome analysis of early somatic embryogenesis in Picea glauca
-
Lippert D., Zhuang J., Ralph S., Ellis D.E., Gilbert M., Olafson R., Ritland K., Ellis B.E., Douglas C.J., and Bohlmann J. Proteome analysis of early somatic embryogenesis in Picea glauca. Proteomics 5 (2005) 461-473
-
(2005)
Proteomics
, vol.5
, pp. 461-473
-
-
Lippert, D.1
Zhuang, J.2
Ralph, S.3
Ellis, D.E.4
Gilbert, M.5
Olafson, R.6
Ritland, K.7
Ellis, B.E.8
Douglas, C.J.9
Bohlmann, J.10
-
13
-
-
0033769445
-
A proteomic analysis of organelles from Arabidopsis thaliana
-
Prime T., Sherrier D.J., Mahon P., Packman L.C., and Dupree P. A proteomic analysis of organelles from Arabidopsis thaliana. Electrophoresis 21 (2000) 3488-3499
-
(2000)
Electrophoresis
, vol.21
, pp. 3488-3499
-
-
Prime, T.1
Sherrier, D.J.2
Mahon, P.3
Packman, L.C.4
Dupree, P.5
-
14
-
-
0030464642
-
Accelerated production of transgenic wheat (Triticum aestivum L.) plants
-
Altpeter F., Vasil V., Srivastava V., Stöger E., and Vasil I.K. Accelerated production of transgenic wheat (Triticum aestivum L.) plants. Plant Cell Rep. 16 (1996) 12-16
-
(1996)
Plant Cell Rep.
, vol.16
, pp. 12-16
-
-
Altpeter, F.1
Vasil, V.2
Srivastava, V.3
Stöger, E.4
Vasil, I.K.5
-
15
-
-
0033946976
-
Embryogenic cells in Dactylis glomerata L. (Poaceae) explants identified by cell tracking and SERK expression
-
Somleva M.N., Schmidt E., and de Vries S.C. Embryogenic cells in Dactylis glomerata L. (Poaceae) explants identified by cell tracking and SERK expression. Plant Cell Rep. 19 (2000) 718-726
-
(2000)
Plant Cell Rep.
, vol.19
, pp. 718-726
-
-
Somleva, M.N.1
Schmidt, E.2
de Vries, S.C.3
-
16
-
-
0037560022
-
cdc2 protein kinase (cdc2Pa) genes during somatic embryogenesis in Norway spruce (Picea abies [L.] Karst)
-
cdc2 protein kinase (cdc2Pa) genes during somatic embryogenesis in Norway spruce (Picea abies [L.] Karst). J. Exp. Bot. 54 (2003) 1711-1719
-
(2003)
J. Exp. Bot.
, vol.54
, pp. 1711-1719
-
-
Footitt, S.1
Ingouff, M.2
Clapham, D.3
von Arnold, S.4
-
17
-
-
0033712277
-
Green fluorescent protein as a visual marker for wheat transformation
-
Jordan M.C. Green fluorescent protein as a visual marker for wheat transformation. Plant Cell Rep. 19 (2000) 1069-1075
-
(2000)
Plant Cell Rep.
, vol.19
, pp. 1069-1075
-
-
Jordan, M.C.1
-
18
-
-
33645470420
-
Analysis of the wheat and Puccinia triticina (leaf rust) proteomes during a susceptible host-pathogen interaction
-
Rampitsch C., Bykova N.V., McCallum B., Beimcik E., and Ens W. Analysis of the wheat and Puccinia triticina (leaf rust) proteomes during a susceptible host-pathogen interaction. Proteomics 6 (2006) 1897-1907
-
(2006)
Proteomics
, vol.6
, pp. 1897-1907
-
-
Rampitsch, C.1
Bykova, N.V.2
McCallum, B.3
Beimcik, E.4
Ens, W.5
-
19
-
-
10544244161
-
Linking genome and proteome by mass spectrometry: large scale identification of yeast proteins from two dimensional gels
-
Shevchenko A., Jensen O.N., Podtelejnikov A.V., Sagliocco F., Wilm M., Vorm O., Mortensen P., Shevchenko A., Boucherie H., and Mann M. Linking genome and proteome by mass spectrometry: large scale identification of yeast proteins from two dimensional gels. Proc. Natl. Acad. Sci. USA 93 (1996) 14440-14445
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 14440-14445
-
-
Shevchenko, A.1
Jensen, O.N.2
Podtelejnikov, A.V.3
Sagliocco, F.4
Wilm, M.5
Vorm, O.6
Mortensen, P.7
Shevchenko, A.8
Boucherie, H.9
Mann, M.10
-
20
-
-
0035258256
-
Characterization of phosphoproteins from electrophoretic gels by nanoscale Fe(III) affinity chromatography with off-line mass spectrometry analysis
-
Stensballe A., Andersen S., and Jensen O.N. Characterization of phosphoproteins from electrophoretic gels by nanoscale Fe(III) affinity chromatography with off-line mass spectrometry analysis. Proteomics 1 (2001) 207-218
-
(2001)
Proteomics
, vol.1
, pp. 207-218
-
-
Stensballe, A.1
Andersen, S.2
Jensen, O.N.3
-
21
-
-
0034124238
-
A tandem quadrupole/time-of-flight mass spectrometer with a matrix-assisted laser desorption/ionization source: design and performance
-
Loboda A.V., Krutchinsky A.N., Bromirski M., Ens W., and Standing K.G. A tandem quadrupole/time-of-flight mass spectrometer with a matrix-assisted laser desorption/ionization source: design and performance. Rapid Commun. Mass Spectrom. 14 (2000) 1047-1057
-
(2000)
Rapid Commun. Mass Spectrom.
, vol.14
, pp. 1047-1057
-
-
Loboda, A.V.1
Krutchinsky, A.N.2
Bromirski, M.3
Ens, W.4
Standing, K.G.5
-
22
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215 (1990) 403-410
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
23
-
-
0035326344
-
Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching
-
Shevchenko A., Sunyaev S., Loboda A., Shevchenko A., Bork P., Ens W., and Standing K. Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching. Anal. Chem. 73 (2001) 1917-1926
-
(2001)
Anal. Chem.
, vol.73
, pp. 1917-1926
-
-
Shevchenko, A.1
Sunyaev, S.2
Loboda, A.3
Shevchenko, A.4
Bork, P.5
Ens, W.6
Standing, K.7
-
24
-
-
0033051101
-
Direct analysis of protein complexes using mass spectrometry
-
Link A.J., Eng J., Schieltz D.M., Carmack E., Mize G.J., Morris D.R., Garvik B.M., and Yates J.R. Direct analysis of protein complexes using mass spectrometry. Nat. Biotechnol. 17 (1999) 676-682
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 676-682
-
-
Link, A.J.1
Eng, J.2
Schieltz, D.M.3
Carmack, E.4
Mize, G.J.5
Morris, D.R.6
Garvik, B.M.7
Yates, J.R.8
-
25
-
-
4444335470
-
The ABCs (and XYZs) of peptide sequencing
-
Steen H., and Mann M. The ABCs (and XYZs) of peptide sequencing. Nat. Rev. 5 (2004) 699-711
-
(2004)
Nat. Rev.
, vol.5
, pp. 699-711
-
-
Steen, H.1
Mann, M.2
-
26
-
-
0141884306
-
Peptide and protein de novo sequencing by mass spectrometry
-
Standing K.G. Peptide and protein de novo sequencing by mass spectrometry. Current Opin. Struct. Biol. 13 (2003) 595-601
-
(2003)
Current Opin. Struct. Biol.
, vol.13
, pp. 595-601
-
-
Standing, K.G.1
-
27
-
-
0033614273
-
Light-enhanced induction of ascorbate peroxidase in Japanese radish roots during postgerminative growth
-
Morimura Y., Iwamoto K., Ohya T., Igarashi T., Nakamura Y., Kubo A., Tanaka K., and Ikawa T. Light-enhanced induction of ascorbate peroxidase in Japanese radish roots during postgerminative growth. Plant Sci. 142 (1999) 123-132
-
(1999)
Plant Sci.
, vol.142
, pp. 123-132
-
-
Morimura, Y.1
Iwamoto, K.2
Ohya, T.3
Igarashi, T.4
Nakamura, Y.5
Kubo, A.6
Tanaka, K.7
Ikawa, T.8
-
28
-
-
0028489814
-
Genes induced by aluminum in wheat (Triticum aestivum L.) roots.
-
Richards K.D., Snowden K.C., Gardner R.C., and Wali6 wali7. Genes induced by aluminum in wheat (Triticum aestivum L.) roots. Plant Physiol. 105 (1994) 1455-1456
-
(1994)
Plant Physiol.
, vol.105
, pp. 1455-1456
-
-
Richards, K.D.1
Snowden, K.C.2
Gardner, R.C.3
-
29
-
-
3042815334
-
Trypsin cleaves exclusively C-terminal to arginine and lysine residues
-
Olsen J.V., Ong S., and Mann M. Trypsin cleaves exclusively C-terminal to arginine and lysine residues. Mol. Cell. Proteomics 3 (2004) 608-614
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 608-614
-
-
Olsen, J.V.1
Ong, S.2
Mann, M.3
-
31
-
-
0031787237
-
Aluminum induces oxidative stress genes in Arabidopsis thaliana
-
Richards K.D., Schott E.J., Sharma Y.K., Davis K.R., and Gardner R.C. Aluminum induces oxidative stress genes in Arabidopsis thaliana. Plant Physiol. 116 (1998) 409-418
-
(1998)
Plant Physiol.
, vol.116
, pp. 409-418
-
-
Richards, K.D.1
Schott, E.J.2
Sharma, Y.K.3
Davis, K.R.4
Gardner, R.C.5
-
32
-
-
13444262384
-
CDD: a conserved domain database for protein classification
-
Marchler-Bauer A., Anderson J.B., Cherukuri P.F., DeWeese-Scott S.C., Geer L.Y., Gwadz M., He S., Hurwitz D.I., Jackson J.D., Ke Z., Lanczycki C.J., Liebert C.A., Liu C., Lu F., Marchler G.H., Mullokandov M., Shoemaker B.A., Simonyan V., Song J.S., Thiessen P.A., Yamashita R.A., Yin J.J., and Bryant S.H. CDD: a conserved domain database for protein classification. Nucl. Acids Res. 33 (2005) D192-D196
-
(2005)
Nucl. Acids Res.
, vol.33
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Cherukuri, P.F.3
DeWeese-Scott, S.C.4
Geer, L.Y.5
Gwadz, M.6
He, S.7
Hurwitz, D.I.8
Jackson, J.D.9
Ke, Z.10
Lanczycki, C.J.11
Liebert, C.A.12
Liu, C.13
Lu, F.14
Marchler, G.H.15
Mullokandov, M.16
Shoemaker, B.A.17
Simonyan, V.18
Song, J.S.19
Thiessen, P.A.20
Yamashita, R.A.21
Yin, J.J.22
Bryant, S.H.23
more..
-
33
-
-
4544291080
-
Phosphoproteomics of the arabidopsis plasma membrane and a new phosphorylation site database
-
Nühse T.S., Stensballe A., Jensen O.N., and Peck S.C. Phosphoproteomics of the arabidopsis plasma membrane and a new phosphorylation site database. Plant Cell 16 (2004) 2394-2405
-
(2004)
Plant Cell
, vol.16
, pp. 2394-2405
-
-
Nühse, T.S.1
Stensballe, A.2
Jensen, O.N.3
Peck, S.C.4
-
34
-
-
20644441336
-
Spot overlapping in two-dimensional maps: a serious problem ignored for much too long
-
Campostrini N., Areces L.B., Rappsilber J., Pietrogrande M., Dondi F., Pastorino M., Ponzoni M., and Righetti P.G. Spot overlapping in two-dimensional maps: a serious problem ignored for much too long. Proteomics 5 (2005) 2385-2395
-
(2005)
Proteomics
, vol.5
, pp. 2385-2395
-
-
Campostrini, N.1
Areces, L.B.2
Rappsilber, J.3
Pietrogrande, M.4
Dondi, F.5
Pastorino, M.6
Ponzoni, M.7
Righetti, P.G.8
|