Plant coenzyme A biosynthesis: Characterization of two pantothenate kinases from Arabidopsis

Plant Molecular Biology

Volumn 61, Issue 4-5, 2006, Pages 629-642

  Tilton, G B ^a   Wedemeyer, W J ^a   Browse, J ^b   Ohlrogge, J ^a  

^a MICHIGAN STATE UNIVERSITY   (United States)

^b WASHINGTON STATE UNIVERSITY   (United States)

Author keywords

Coenzyme A biosynthesis; Germination; Lipid synthesis; Pantothenate kinase

Indexed keywords

BIOSYNTHESIS; LIPIDS; PLANTS (BOTANY);

COENZYME A BIOSYNTHESIS; HOMOLOGY STRUCTURE; LIPID SYNTHESIS; PANTOTHENATE KINASE;

ENZYMES;

ARABIDOPSIS PROTEIN; BACTERIAL DNA; COENZYME A; MESSENGER RNA; PANK1 PROTEIN, ARABIDOPSIS; PANK2 PROTEIN, ARABIDOPSIS; PHOSPHOTRANSFERASE; PLANT RNA; T DNA; T-DNA; VEGETABLE OIL;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; BIOSYNTHESIS; CHEMICAL STRUCTURE; CHEMISTRY; ENZYMOLOGY; GENE EXPRESSION REGULATION; GENETIC COMPLEMENTATION; GENETICS; HUMAN; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; MUTATION; PLANT LEAF; PROTEIN CONFORMATION;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARABIDOPSIS PROTEINS; CLONING, MOLECULAR; COENZYME A; DNA, BACTERIAL; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENE EXPRESSION REGULATION, PLANT; GENETIC COMPLEMENTATION TEST; HUMANS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTATION; PHOSPHOTRANSFERASES (ALCOHOL GROUP ACCEPTOR); PLANT LEAVES; PLANT OILS; PROTEIN CONFORMATION; RNA, MESSENGER; RNA, PLANT;

BIOSYNTHESIS; ENZYMES; GERMINATION; GROWTH; LIPIDS; PLANTS;

ANIMALIA; ARABIDOPSIS; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; EUKARYOTA;

EID: 33746727083     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-006-0037-4     Document Type: Article

References (39)

1. JM Alonso AN Stepanova TJ Leisse CJ Kim H Chen P Shinn DK Stevenson J Zimmerman P Barajas R Cheuk C Gadrinab C Heller A Jeske E Koesema CC Meyers H Parker L Prednis Y Ansari N Choy H Deen M Geralt N Hazari E Hom M Karnes C Mulholland R Ndubaku I Schmidt P Guzman L Aguilar-Henonin M Schmid D Weigel DE Carter T Marchand E Risseeuw D Brogden A Zeko WL Crosby CC Berry JR Ecker 2003 Genome-wide insertional mutagenesis of Arabidopsis thaliana Science 301 653 657
2. SF Altschul W Gish W Miller EW Myers DJ Lipman 1990 Basic local alignment search tool J Mol Biol 215 403 410
3. SF Altschul TL Madden AA Schaffer J Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402
4. LA Brand E Strauss 2005 Characterization of a new pantothenate kinase isoform from Helicobacter pylori J Biol Chem 280 20185 20188
5. RB Calder RS Williams G Ramaswamy CO Rock E Campbell SE Unkles JR Kinghorn S Jackowski 1999 Cloning and characterization of a eukaryotic pantothenate kinase gene (panK) from Aspergillus nidulans J Biol Chem 274 2014 2020
6. AA Canutescu AA Shelenkov RL Dunbrack Jr. 2003 A graph-theory algorithm for rapid protein side-chain prediction Protein Sci 12 2001 2014
7. PJ Eastmond V Germain PR Lange JH Bryce SM Smith IA Graham 2000 Postgerminative growth and lipid catabolism in oilseeds lacking the glyoxylate cycle Proc Natl Acad Sci USA 97 5669 5674
8. A Espinosa-Ruiz JM Belles R Serrano FA Culianez-MacIa 1999 Arabidopsis thaliana AtHAL3: a flavoprotein related to salt and osmotic tolerance and plant growth Plant J 20 529 539
9. KL Falk DJ Guerra 1993 Coenzyme A biosynthesis in plants: partial purification and characterization of pantothenate kinase from spinach Arch Biochem Biophys 301 424 430
10. M Fulda J Schnurr A Abbadi E Heinz J Browse 2004 Peroxisomal Acyl-CoA synthetase activity is essential for seedling development in Arabidopsis thaliana Plant Cell 16 394 405
11. U Genschel 2004 Coenzyme A biosynthesis: reconstruction of the pathway in archaea and an evolutionary scenario based on comparative genomics Mol Biol Evol 21 1242 1251
12. U Genschel CA Powell C Abell AG Smith 1999 The final step of pantothenate biosynthesis in higher plants: cloning and characterization of pantothenate synthetase from Lotus japonicus and Oryza sativum (rice) Biochem J 341 Pt 3 669 678
13. V Germain EL Rylott TR Larson SM Sherson N Bechtold JP Carde JH Bryce IA Graham SM Smith 2001 Requirement for 3-ketoacyl-CoA thiolase-2 in peroxisome development, fatty acid beta-oxidation and breakdown of triacylglycerol in lipid bodies of Arabidopsis seedlings Plant J 28 1 12
14. K Ginalski A Elofsson D Fischer L Rychlewski 2003 3D-Jury: a simple approach to improve protein structure predictions Bioinformatics 19 1015 1018
15. P Gouet E Courcelle DI Stuart F Metoz 1999 ESPript: analysis of multiple sequence alignments in PostScript Bioinformatics 15 305 308
16. MW Gray 1993 Origin and evolution of organelle genomes Curr Opin Genet Dev 3 884 890
17. S Guo JK Bhattacharjee 2004 Posttranslational activation, site-directed mutation and phylogenetic analyses of the lysine biosynthesis enzymes alpha-aminoadipate reductase Lys1p (AAR) and the phosphopantetheinyl transferase Lys7p (PPTase) from Schizosaccharomyces pombe Yeast 21 1279 1288
18. DA Hopwood DH Sherman 1990 Molecular genetics of polyketides and its comparison to fatty acid biosynthesis Annu Rev Genet 24 37 66
19. K Hortnagel H Prokisch T Meitinger 2003 An isoform of hPANK2, deficient in pantothenate kinase-associated neurodegeneration, localizes to mitochondria Hum Mol Genet 12 321 327
20. H Kleinkauf H Von Dohren 1996 A nonribosomal system of peptide biosynthesis Eur J Biochem 236 335 351
21. KM Knights R Drew 1988 A radioisotopic assay of picomolar concentrations of coenzyme A in liver tissue Anal Biochem 168 94 99
22. T Kupke P Hernandez-Acosta FA Culianez-Macia 2003 4′- phosphopantetheine and coenzyme A biosynthesis in plants J Biol Chem 278 38229 38237
23. Y Li Y Chang L Zhang Q Feng Z Liu Y Zhang J Zuo Y Meng F Fang 2005 High glucose upregulates pantothenate kinase 4 (PanK4) and thus affects M2-type pyruvate kinase (Pkm2) Mol Cell Biochem 277 117 125
24. F Lynen 1980 On the structure of fatty acid synthetase of yeast Eur J Biochem 112 431 442
25. Y Nakamura T Gojobori T Ikemura 2000 Codon usage tabulated from international DNA sequence databases: status for the year 2000 Nucleic Acids Res 28 292
26. M Neuburger DA Day R Douce 1984 Transport of coenzyme A in plant mitochondria Arch Biochem Biophys 229 253 258
27. C Notredame DG Higgins J Heringa 2000 T-Coffee: a novel method for fast and accurate multiple sequence alignment J Mol Biol 302 205 217
28. HH Ottenhof JL Ashurst HM Whitney SA Saldanha F Schmitzberger HS Gweon TL Blundell C Abell AG Smith 2004 Organisation of the pantothenate (vitamin B5) biosynthesis pathway in higher plants Plant J 37 61 72
29. CT Porter GJ Bartlett JM Thornton 2004 The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data Nucleic Acids Res 32 D129 133
30. CO Rock RB Calder MA Karim S Jackowski 2000 Pantothenate kinase regulation of the intracellular concentration of coenzyme A J Biol Chem 275 1377 1383
31. Rubio S, Larson TR, Gonzalez-Guzman M, Alejandro S, Graham IA, Serrano R, Rodriguez PL (2006) An Arabidopsis mutant impaired in coenzyme A biosynthesis is sugar-dependent for seedling establishment. Plant Physiol 140(3):830-843
32. SA Ruuska JB Ohlrogge 2001 Protocol for small-scale RNA isolation and transcriptional profiling of developing Arabidopsis seeds Biotechniques 31 752, 754, 756 758
33. M Schmid TS Davison SR Henz UJ Pape M Demar M Vingron B Scholkopf D Weigel JU Lohmann 2005 A gene expression map of Arabidopsis thaliana development Nat Genet 37 501 506
34. J Schwender F Goffman JB Ohlrogge Y Shachar-Hill 2004 Rubisco without the Calvin cycle improves the carbon efficiency of developing green seeds Nature 432 779 782
35. TF Smith MS Waterman 1981 Identification of common molecular subsequences J Mol Biol 147 195 197
36. DS Vallari S Jackowski CO Rock 1987 Regulation of pantothenate kinase by coenzyme A and its thioesters J Biol Chem 262 2468 2471
37. LM Yang MD Fernandez GK Lamppa 1994 Acyl carrier protein (ACP) import into chloroplasts. Covalent modification by a stromal holoACP synthase is stimulated by exogenously added CoA and inhibited by adenosine 3′, 5′-bisphosphate Eur J Biochem 224 743 750
38. M Yun CG Park JY Kim CO Rock S Jackowski HW Park 2000 Structural basis for the feedback regulation of Escherichia coli pantothenate kinase by coenzyme A J Biol Chem 275 28093 28099
39. B Zhou SK Westaway B Levinson MA Johnson J Gitschier SJ Hayflick 2001 A novel pantothenate kinase gene (PANK2) is defective in Hallervorden-Spatz syndrome Nat Genet 28 345 349