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Volumn 91, Issue 3, 2006, Pages 904-911

A polarized-light spectroscopy study of interactions of a hairpin polyamide with DNA

Author keywords

[No Author keywords available]

Indexed keywords

DISTAMYCIN A; DNA; NUCLEIC ACID BASE; POLYAMIDE;

EID: 33746698355     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.105.080564     Document Type: Article
Times cited : (6)

References (30)
  • 2
    • 0024238237 scopus 로고
    • Sequence-specific recognition via the major groove of DNA by oligodeoxynucleotides via triple helix formation
    • Franscois, J. C. 1988. Sequence-specific recognition via the major groove of DNA by oligodeoxynucleotides via triple helix formation. Nucleic Acids Res. 16:11431-11440.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 11431-11440
    • Franscois, J.C.1
  • 4
    • 0034830898 scopus 로고    scopus 로고
    • Molecular recognition of DNA by small molecules
    • Dervan, P. B. 2001. Molecular recognition of DNA by small molecules. Bioorg. Med. Chem. 9:2215-2235.
    • (2001) Bioorg. Med. Chem. , vol.9 , pp. 2215-2235
    • Dervan, P.B.1
  • 8
    • 0028171224 scopus 로고
    • Design of a G.C specific DNA minor groove-binding peptide
    • Geirstanger, B. H., M. Mrksich, P. B. Dervan, and D. E. Wemmer. 1994. Design of a G.C specific DNA minor groove-binding peptide. Science. 266:646-650.
    • (1994) Science , vol.266 , pp. 646-650
    • Geirstanger, B.H.1    Mrksich, M.2    Dervan, P.B.3    Wemmer, D.E.4
  • 9
    • 0032475994 scopus 로고    scopus 로고
    • A structural basis for recognition of A.T and T.A base pairs in the minor groove of B-DNA
    • Kielkopf, C. L., S. White, J. W. Szewczyk, J. M. Turner, E. E. Baird, P. B. Dervan, and D. C. Rees. 1998. A structural basis for recognition of A.T and T.A base pairs in the minor groove of B-DNA. Science. 282:111-115.
    • (1998) Science , vol.282 , pp. 111-115
    • Kielkopf, C.L.1    White, S.2    Szewczyk, J.W.3    Turner, J.M.4    Baird, E.E.5    Dervan, P.B.6    Rees, D.C.7
  • 10
    • 0001015292 scopus 로고
    • Structural characterization of a 2:1 distamycin A:d(CGCAAATTGGC) complex by two dimensional NMR
    • Pelton, J. G., and D. E. Wemmer. 1989. Structural characterization of a 2:1 distamycin A:d(CGCAAATTGGC) complex by two dimensional NMR. Proc. Natl. Acad. Sci. USA. 86:5723-5727.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 5723-5727
    • Pelton, J.G.1    Wemmer, D.E.2
  • 12
    • 0342987251 scopus 로고
    • Design of peptides that bind in the minor groove of DNA at 5′-(A,T)G(A,T)C(A,T)-3′ sequences by a dimeric side-by-side motif
    • Wade, W. S., M. Mrksich, and P. B. Dervan. 1992. Design of peptides that bind in the minor groove of DNA at 5′-(A,T)G(A,T)C(A,T)-3′ sequences by a dimeric side-by-side motif. J. Am. Chem. Soc. 114:8783-8794.
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 8783-8794
    • Wade, W.S.1    Mrksich, M.2    Dervan, P.B.3
  • 13
    • 0032576722 scopus 로고    scopus 로고
    • Recognition of the four Watson-Crick base pairs in the DNA minor groove by synthetic ligands
    • White, S., J. W. Szewczyk, J. M. Turner, E. E. Baird, and P. B. Dervan. 1998. Recognition of the four Watson-Crick base pairs in the DNA minor groove by synthetic ligands. Nature. 391:468-471.
    • (1998) Nature , vol.391 , pp. 468-471
    • White, S.1    Szewczyk, J.W.2    Turner, J.M.3    Baird, E.E.4    Dervan, P.B.5
  • 14
    • 0026661689 scopus 로고
    • Antiparallel side-by-side dimeric motif for sequence-specific recognition in the minor groove of DNA by the designed peptide 1-methylimidazole-2- carboxamide netropsin
    • Mrksich, M., J. C. Watkins, T. J. Dwyer, B. H. Geirstanger, P. Weyermann, and P. B. Dervan. 1992. Antiparallel side-by-side dimeric motif for sequence-specific recognition in the minor groove of DNA by the designed peptide 1-methylimidazole-2-carboxamide netropsin. Proc. Natl. Acad. Sci. USA. 89:7586-7590.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 7586-7590
    • Mrksich, M.1    Watkins, J.C.2    Dwyer, T.J.3    Geirstanger, B.H.4    Weyermann, P.5    Dervan, P.B.6
  • 15
    • 0030813474 scopus 로고    scopus 로고
    • Orientation preferences of pyrrole-imidazole polyamides in the minor groove of DNA
    • White, S., E. E. Baird, and P. B. Dervan. 1997. Orientation preferences of pyrrole-imidazole polyamides in the minor groove of DNA. J. Am. Chem. Soc. 119:8756-8765.
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 8756-8765
    • White, S.1    Baird, E.E.2    Dervan, P.B.3
  • 16
    • 0031576986 scopus 로고    scopus 로고
    • Crystal structures of the side-by-side binding of distamycin to AT-containing DNA octamers d(ICITACIC) and d(ICATATIC)
    • Chen, X., B. Ramakrishnan, and M. Sundaralingam. 1997. Crystal structures of the side-by-side binding of distamycin to AT-containing DNA octamers d(ICITACIC) and d(ICATATIC). J. Mol. Biol. 267:1157-1170.
    • (1997) J. Mol. Biol. , vol.267 , pp. 1157-1170
    • Chen, X.1    Ramakrishnan, B.2    Sundaralingam, M.3
  • 17
    • 0023494886 scopus 로고
    • A bifurcated hydrogen-bonded conformation in the d(A.T) base pairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin
    • Coll, M., C. A. Frederic, A. H.-J. Wang, and A. Rich. 1987. A bifurcated hydrogen-bonded conformation in the d(A.T) base pairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin. Proc. Natl. Acad. Sci. USA. 84:8385-8389.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 8385-8389
    • Coll, M.1    Frederic, C.A.2    Wang, A.H.-J.3    Rich, A.4
  • 18
    • 0026571173 scopus 로고
    • Cooperative binding of distamycin a to DNA in the 2:1 mode
    • Fagan, P. A., and D. E. Wemmer. 1992. Cooperative binding of distamycin A to DNA in the 2:1 mode. J. Am. Chem. Soc. 114:1080-1081.
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 1080-1081
    • Fagan, P.A.1    Wemmer, D.E.2
  • 19
    • 0024291323 scopus 로고
    • 2 complex using 2D NMR and molecular mechanics
    • 2 complex using 2D NMR and molecular mechanics. Biochemistry. 27:8088-8096.
    • (1988) Biochemistry , vol.27 , pp. 8088-8096
    • Pelton, J.G.1    Wemmer, D.E.2
  • 20
    • 0011205264 scopus 로고
    • Structure of an alternating-B DNA helix and its relationship to A-tract DNA
    • Yoon, C., G. G. Privé, D. S. Goodsell, and R. E. Dickerson. 1988. Structure of an alternating-B DNA helix and its relationship to A-tract DNA. Proc. Natl. Acad. Sci. USA. 85:6332-6336.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 6332-6336
    • Yoon, C.1    Privé, G.G.2    Goodsell, D.S.3    Dickerson, R.E.4
  • 21
    • 0029957034 scopus 로고    scopus 로고
    • Binding site size limit of the 2:1 pyrrole-imidazole polyamide-DNA motif
    • Kelly, J. J., E. Baird, and P. B. Dervan. 1996. Binding site size limit of the 2:1 pyrrole-imidazole polyamide-DNA motif. Proc. Natl. Acad. Sci. USA. 93:6981-6985.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 6981-6985
    • Kelly, J.J.1    Baird, E.2    Dervan, P.B.3
  • 22
    • 0029786013 scopus 로고    scopus 로고
    • Recognition of DNA by designed ligands at subnanomolar concentrations
    • Trauger, J. W., E. E. Baird, and P. B. Dervan. 1996. Recognition of DNA by designed ligands at subnanomolar concentrations. Nature. 382:559-561.
    • (1996) Nature , vol.382 , pp. 559-561
    • Trauger, J.W.1    Baird, E.E.2    Dervan, P.B.3
  • 23
  • 24
    • 0030059085 scopus 로고    scopus 로고
    • Solid phase synthesis of polyamides containing imidazole and pyrrole amino acids
    • Baird, E. E., and P. B. Dervan. 1996. Solid phase synthesis of polyamides containing imidazole and pyrrole amino acids. J. Am. Chem. Soc. 118:6141-6146.
    • (1996) J. Am. Chem. Soc. , vol.118 , pp. 6141-6146
    • Baird, E.E.1    Dervan, P.B.2
  • 26
    • 0026560451 scopus 로고
    • Linear dichroism spectroscopy of nucleic acids
    • Nordén, B., M. Kubista, and T. Kurucsev. 1992. Linear dichroism spectroscopy of nucleic acids. Q. Rev. Biophys. 25:51-170.
    • (1992) Q. Rev. Biophys. , vol.25 , pp. 51-170
    • Nordén, B.1    Kubista, M.2    Kurucsev, T.3
  • 27
    • 0022094198 scopus 로고
    • Critical aspects of measurement of circular and linear dichroism: A device for absolute calibration
    • Nordén, B., and S. Seth. 1985. Critical aspects of measurement of circular and linear dichroism: a device for absolute calibration. Appl. Spectrosc. 39:647-657.
    • (1985) Appl. Spectrosc. , vol.39 , pp. 647-657
    • Nordén, B.1    Seth, S.2
  • 29
    • 0032508358 scopus 로고    scopus 로고
    • Circular dichroic and kinetic differentiation of DNA binding modes of distamycin
    • Chen, F. M., and F. Sha. 1998. Circular dichroic and kinetic differentiation of DNA binding modes of distamycin. Biochemistry. 37:11143-11151.
    • (1998) Biochemistry , vol.37 , pp. 11143-11151
    • Chen, F.M.1    Sha, F.2
  • 30
    • 0023395461 scopus 로고
    • Induced CD of DNA intercalators: Electric dipole allowed transitions
    • Lyng, R., T. Hard, and B. Nordén. 1987. Induced CD of DNA intercalators: electric dipole allowed transitions. Biopolymers. 26:1327-1345.
    • (1987) Biopolymers , vol.26 , pp. 1327-1345
    • Lyng, R.1    Hard, T.2    Nordén, B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.