Effects of vegetation on root-associated microbial communities: A comparison of disturbed versus undisturbed estuarine sediments

Soil Biology and Biochemistry

Volumn 38, Issue 8, 2006, Pages 2359-2371

  Ravit, B ^a   Ehenfeld, J G ^b   Haggblom M M ^a  

^a The State University of New Jersey   (United States)

^b RUTGERS UNIVERSITY   (United States)

Author keywords

Catabolic response profile; CRP; Estuarine; Microbial community function; Microbial community structure; Phospholipid fatty acid; Phragmites australis; PLFA; Spartina alterniflora; Wetland sediments

Indexed keywords

ECOSYSTEMS; ESTUARIES; FATTY ACIDS; PHOSPHOLIPIDS; SEDIMENTS; VEGETATION; WETLANDS;

CATABOLIC RESPONSE PROFILE; MICROBIAL COMMUNITY FUNCTION; PHOSPHOLIPID FATTY ACID; PHRAGMITES AUSTRALIS;

MICROORGANISMS;

ANOXIC CONDITIONS; CARBON DIOXIDE; COMPARATIVE STUDY; ESTUARY; FATTY ACID; GRASS; MACROPHYTE; MICROBIAL COMMUNITY; PHOSPHOLIPID; RHIZOSPHERE; ROOT; SALTMARSH; SEDIMENT PROPERTY; UPLAND REGION; VEGETATION;

PHRAGMITES; PHRAGMITES AUSTRALIS; SPARTINA ALTERNIFLORA;

EID: 33746636340     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2006.02.012     Document Type: Article

References (59)

1. Alexander M. Biodegradation and Bioremediation. second ed (1999), Academic Press, San Diego, CA pp. 289-294
2. Armstrong J., Armstrong W., Beckett P.M., Halder J.E., Lythe S., Holt R., and Sinclair A. Pathways of aeration and the mechanisms of beneficial effects of humidity- and Venturi-induced convections in Phragmites australis (Cav.) Trin. Ex Steud. Aquatic Botany 54 (1996) 177-197
3. Armstrong W., Cousins D., Armstrong J., Turner D.W., and Beckett P.M. Oxygen distribution in wetland plant roots and permeability barriers to gas-exchange with the rhizosphere: a microelectrode and modeling study with Phragmites australis. Annals of Botany 86 (2000) 687-703
4. Bagwell C.E., Dantzler M., Bergholz P.W., and Lovell C.R. Host-specific ecotype of rhizoplane diazotrophs of the perennial glasswort Salicornia virginica and selected salt marsh grasses. Aquatic Microbial Ecology 23 (2001) 293-300
5. Bertani A., and Reggiani R. Anaerobic metabolism in rice roots. In: Jackson M.B., Davies D.D., and Lambers H. (Eds). Plant Life Under Oxygen Deprivation (1991), SPB Academic Publishing, The Hague, Netherlands 187-199
6. Borga P., Nilsson M., and Tunlid A. Bacterial communities in peat in relation to botanical composition as revealed by phospholipid fatty acid analysis. Soil Biology & Biochemistry 7 (1994) 841-848
7. Boschker H.T.S., de Brower J.F.C., and Cappenberg T.E. The contribution of macrophyte-derived organic matter to microbial biomass in salt-marsh sediments: stable carbon isotope analysis of microbial biomarkers. Limnology and Oceanography 44 (1999) 309-319
8. Burke D.J., Hamerlynck E.P., and Hahn D. Interactions among plant species and microorganisms in salt marsh sediments. Applied and Environmental Microbiology 68 (2002) 1157-1164
9. Campbell C.D., Grayston S.J., and Hirst D.J. Use of rhizosphere carbon sources in sole carbon source tests to discriminate soil microbial communities. Journal of Microbiological Methods 30 (1997) 33-41
10. Chambers R.M. Porewater chemistry associated with Phragmites and Spartina in a Connecticut tidal marsh. Wetlands 17 3 (1997) 360-367
11. Crawford R.M.M. Metabolic adaptations to anoxia. In: Crawford R.M.M., and Hook D.D. (Eds). Processes in Anaerobic Environments (1980), Ann Arbor Science, Ann Arbor, MI 119-136
12. Daane L.L., Harjono I., Zylstra G.J., and Häggblom M.M. Isolation and characterization of polycyclic aromatic hydrocarbon-degrading bacteria associated with the rhizosphere of salt marsh plants. Applied and Environmental Microbiology 67 (2001) 2683-2691
13. Degens B.P. Catabolic response profiles differ between microorganisms grown in soils. Soil Biology & Biochemistry 31 (1999) 475-477
14. Degens B.P., and Harris J.A. Development of a physiological approach to measuring the catabolic diversity of soil microbial communities. Soil Biology & Biochemistry 29 (1997) 1309-1320
15. Degens B.P., Schipper L.A., Sparling G.P., and Duncan L.C. Is the microbial community in a soil with reduced catabolic diversity less resistant to stress or disturbance?. Soil Biology & Biochemistry 33 (2001) 1143-1153
16. Drake H.L. Acetogenesis (1994), Chapman & Hall, New York
17. Ehrenfeld J.G., Ravit B., and Elgersma K. Feedback in the plant-soil system. Annual Review of Environment and Resources 30 (2005) 7.1-7.41
18. Gopal B., and Goel U. Competition and allelopathy in aquatic plant communities. The Botanical Review 59 (1993) 155-210
19. Grayston S.J., Wang S., Campbell C.D., and Edwards A.C. Selective influence of plant species on microbial diversity in the rhizosphere. Soil Biology & Biochemistry 30 (1998) 369-378
20. Grayston S.J., Griffith G.S., Mawdsley J.L., Campbell C.D., and Bardgett R.D. Accounting for variability in soil microbial communities of temperate upland grassland ecosystems. Soil Biology & Biochemistry 33 (2001) 533-551
21. Grosse W., Armstrong J., and Armstrong W. A history of pressurized gas-flow studies in plants. Aquatic Botany 54 (1996) 87-100
22. Grotenhuis J.T.C., Smit M., Plugge C.M., Yuansheng X., van Lammeren A.A.M., Stams A.J.M., and Zehnder J.B. Bacteriological composition and structure of granular sludge adapted to different substrates. Applied and Environmental Microbiology 57 (1991) 1942-1949
23. Häggblom M.M., and Bossert I.D. Dehalogenation: Microbial Processes and Environmental Applications (2003), Kluwer Academic Publishers, Boston, MA
24. Hines M.E., Evans R.S., Genthner B.R.S., Willis S.G., Friedman S., Rooney-Varga J.N., and Devereux R. Molecular phylogenetic and biogeochemical studies of sulfate-reducing bacteria in the rhizosphere of Spartina alterniflora. Applied and Environmental Microbiology 65 (1999) 2209-2216
25. Hwang Y.-H., and Morris J.T. Evidence for hygrometric pressurization in the internal gas space of Spartina alterniflora. Plant Physiology 96 (1991) 166-171
26. Ibekwe A., and Kennedy A.C. Phospholipid fatty acid profiles and carbon utilization patterns for analysis of microbial community structure under field and greenhouse conditions. FEMS Microbiology Ecology 26 (1998) 151-163
27. Kennish M.J. Ecology of Estuaries: Anthropogenic Effects (1992), CRC Press, Boca Raton, Fl
28. King J.D., White D.C., and Taylor C.W. Use of lipid composition and metabolism to examine structure and activity of estuarine detrital microflora. Applied and Environmental Microbiology 33 (1977) 1177-1183
29. Kourtev P.S., Ehrenfeld J.G., and Häggblom M.M. Experimental analysis of the effect of exotic and native plant species on the structure and function of soil microbial communities. Soil Biology & Biochemistry 35 (2003) 895-905
30. 14C-labelled plant residues. Soil Biology & Biochemistry 27 (1995) 777-783
31. Leaphart A.B., Friez M.J., and Lovell C.R. Formyltetrahydrofolate synthetase sequences from salt marsh plant roots reveal a diversity of acetogenic bacteria and other bacterial functional groups. Applied and Environmental Microbiology 69 (2003) 693-696
32. Leigh G.J. The World's Greatest Fix: A History of Nitrogen and Agriculture (2004), Oxford University Press, New York pp. 164-186
33. Liljeroth E., Kuikman P., and Van Veen J.A. Carbon translocation to the rhizosphere of maize and wheat and influence on the turnover of native soil organic matter at different soil nitrogen levels. Plant Soil 161 (1994) 233-240
34. Ludemann H., Arth I., and Wiesack W. Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores. Applied and Environmental Microbiology 66 (2000) 754-762
35. Lynch J.M., and Whipps J.M. Substrate flow in the rhizosphere. Plant Soil 129 (1990) 1-10
36. Marschner P., Yang C.-H., Lieberei R., and Crowley D.E. Soil and plant specific effects on bacterial community composition in the rhizosphere. Soil Biology & Biochemistry 33 (2001) 1437-1445
37. Mendelssohn I.A., McKee K.I., and Patrick W.H. Oxygen deficiency in Spartina alterniflora roots: metabolic adaptation to anoxia. Science 241 (1981) 439-441
38. Meyerson L.A., Saltonstall K., Windham L., Kiviat E., and Findlay S. A comparison of Phragmites australis in freshwater and brackish marsh environments in North America. Wetland Ecology Management 9 (2000) 89-103
39. Moller S., Korber D.R., Wolfaardt G.M., Molin S., and Caldwell D.E. Impact of nutrient composition on a degradative biofilm community. Applied and Environmental Microbiology 63 (1997) 2432-2438
40. Neori A., Reddy K.R., and Ciskova-Koncalova H. Bioactive chemicals and biological-biochemical activities and their functions in rhizospheres of wetland plants. The Botanical Review 66 (2000) 350-373
41. Nielsen L.B., Finster K., Welsh D.T., Donelly A., Herbert R.A., de Wit R., and Lomstein B.A. Sulphate reduction and nitrogen fixation rates associated with roots, rhizomes and sediments from Zostera noltii and Spartina maritime meadows. Environmental Microbiology 3 (2001) 63-71
42. Øvreås L. Population and community level approaches for analyzing microbial diversity in natural environments. Ecology Letters 3 (2000) 236-251
43. Quinn J.R. Fields of Sun and Grass (1997), Rutgers University Press, New Brunswick, NJ
44. Ratledge C., and Wilkinson S.G. Microbial Lipids vols. 1-2 (1988), Academic Press Ltd, San Diego, CA
45. Ravit B., Ehrenfeld J.G., and Häggblom M.M. A comparison of sediment microbial communities associated with Phragmites australis and Spartina alterniflora in two brackish wetlands of New Jersey. Estuaries 26 (2003) 465-474
46. Ravit B., Ehrenfeld J.G., and Häggblom M.M. Salt marsh rhizosphere affects microbial biotransformation of the widespread halogenated contaminant tetrabromobisphenol-A (TBBPA). Soil Biology & Biochemistry 37 (2005) 1049-1057
47. Rice D., Rooth J., and Stevenson J.C. Colonization and expansion of Phragmites australis in upper Chesapeake Bay tidal marshes. Wetlands 20 (2000) 280-299
48. Richert M., Saarnio S., Juutinen S., Silvola J., Augustin J., and Merbach W. Distribution of assimilated carbon in the system Phragmites australis-waterlogged peat soil after carbon-14 pulse labeling. Biology Fertility Soils 32 (2000) 1-7
49. Robinson, D.A., 2004. http://climate.rutgers.edu/stateclim/docs/01122004davedrought.txt.
50. Rooth J.E., and Stevenson J.C. Sediment deposition patterns in Phragmites australis communities: implications for coastal areas threatened by rising sea-level. Wetlands Ecology Management 8 (2000) 173-183
51. Schutter M., and Dick R. Shifts in substrate utilization potential and structure of soil microbial communities in response to carbon substrates. Soil Biology & Biochemistry 33 (2001) 1481-1491
52. Sparling R., and Gottschalk G. Molecular hydrogen and energy conservation in methanogenic and acetogenic bacteria. In: Balaich J.P., Bruschi M., and Garcia J.I. (Eds). Microbiology and biochemistry of strict anaerobes involved in interspecies hydrogen transfer (1990), Plenum Press, NY
53. Teal J.M., and Kanwisher J.W. Gas transport in the marsh grass, Spartina alterniflora. Journal of Experimental Botany 17 (1966) 355-361
54. Wainwright S.C., Weinstein M.P., Able K.W., and Currin C.A. Relative importance of benthic microalgae, phytoplankton and the detritus of smooth cordgrass Spartina alterniflora and the common reed Phragmites australis to brackish-marsh food webs. Marine Ecology Progress Series 200 (2000) 77-91
55. Weinstein M.P., and Balletto J.H. Does the common reed, Phragmites australis, affect essential fish habitat?. Estuaries 22 (1999) 793-802
56. Weis J.S., and Weis P. Behavioral responses and interactions of estuarine animals with an invasive marsh plant: a laboratory analysis. Biological Invasions 2 (2000) 305-314
57. White D.C., Davis W.M., Nickels J.S., Kind J.D., and Bobbie R.J. Determination of sedimentary microbial biomass by extractible lipid phosphate. Oecologia 40 (1979) 51-62
58. Windham L., and Ehrenfeld J.G. Net impact of a plant invasion on nitrogen-cycling processes within a brackish tidal marsh. Ecological Applications 13 (2003) 883-897
59. Windham L., and Lathrop Jr. R.G. Effects of P. australis invasion on aboveground biomass and soil properties in brackish tidal marsh of Mullica River, NJ. Estuaries 22 4 (1999) 927-935