메뉴 건너뛰기




Volumn 88, Issue 7, 2006, Pages 923-929

An approach of encoding for prediction of splice sites using SVM

Author keywords

Coding sequence; Splice sites; Support vector machines

Indexed keywords

ACCURACY; ALGORITHM; ARTICLE; EUKARYOTE; MACHINE; PREDICTION AND FORECASTING; BIOLOGY; COMPARATIVE STUDY; EXON; GENETICS; INTRON; METHODOLOGY; REPRODUCIBILITY; RNA SPLICING;

EID: 33746634756     PISSN: 03009084     EISSN: 61831638     Source Type: Journal    
DOI: 10.1016/j.biochi.2006.03.006     Document Type: Article
Times cited : (50)

References (23)
  • 1
    • 0034708274 scopus 로고    scopus 로고
    • S.A. Brenner, Genomics The end of the beginning, Science 287 (5461) 2173-2174.
  • 2
    • 0035875551 scopus 로고    scopus 로고
    • Human GC-AG alternative intron isoforms with weak donor sites show enhanced consensus at acceptor exon positions
    • Thanaraj T.A., and Clark F. Human GC-AG alternative intron isoforms with weak donor sites show enhanced consensus at acceptor exon positions. Nucleic Acids Res. 29 (2001) 2581-2593
    • (2001) Nucleic Acids Res. , vol.29 , pp. 2581-2593
    • Thanaraj, T.A.1    Clark, F.2
  • 5
    • 0035504952 scopus 로고    scopus 로고
    • Effective hidden Markov models for detecting splicing junction sites in DNA sequences
    • Yin M.M., and Wang J.T.L. Effective hidden Markov models for detecting splicing junction sites in DNA sequences. Inf. Sci. 139 (2001) 139-163
    • (2001) Inf. Sci. , vol.139 , pp. 139-163
    • Yin, M.M.1    Wang, J.T.L.2
  • 6
    • 2942594395 scopus 로고    scopus 로고
    • Fast feature selection using a simple estimation of distribution algorithm: a case study on splice sites prediction
    • Saeysl Y., Degroeve1 S., Aeyels D., Van de Peer1 Y., and Rouz P. Fast feature selection using a simple estimation of distribution algorithm: a case study on splice sites prediction. Bioinformatics 19 (2003) 179-188
    • (2003) Bioinformatics , vol.19 , pp. 179-188
    • Saeysl, Y.1    Degroeve, S.2    Aeyels, D.3    Van de Peer, Y.4    Rouz, P.5
  • 9
    • 0021760026 scopus 로고
    • Computer methods to locate signals in nucleic acid sequences
    • Staden R. Computer methods to locate signals in nucleic acid sequences. Nucleic Acids Res. 12 (1984) 505-519
    • (1984) Nucleic Acids Res. , vol.12 , pp. 505-519
    • Staden, R.1
  • 10
    • 0027377256 scopus 로고
    • A weight array method for splicing signal analysis
    • Zhang M.Q., and Marr T.G. A weight array method for splicing signal analysis. Comput. Appl. Biosci. 9 (1993) 499-509
    • (1993) Comput. Appl. Biosci. , vol.9 , pp. 499-509
    • Zhang, M.Q.1    Marr, T.G.2
  • 11
    • 0030869663 scopus 로고    scopus 로고
    • A method for identifying splice sites and translational start sites in eukaryotic mRNA
    • Salzberg S.L. A method for identifying splice sites and translational start sites in eukaryotic mRNA. Comput. Appl. Biosci. 13 (1997) 365-376
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 365-376
    • Salzberg, S.L.1
  • 12
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in Human genomic DNA
    • Burge C., and Karlin S. Prediction of complete gene structures in Human genomic DNA. J. Mol. Biol. 268 (1997) 78-94
    • (1997) J. Mol. Biol. , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 14
    • 34249753618 scopus 로고
    • Support vector network
    • Cortes C., and Vapnik V. Support vector network. Mach. Learn. 20 (1995) 273-297
    • (1995) Mach. Learn. , vol.20 , pp. 273-297
    • Cortes, C.1    Vapnik, V.2
  • 16
    • 33746638191 scopus 로고    scopus 로고
    • Roderic Guigó, Evaluation of gene structure prediction programs
    • Moisès Burset
    • Moisès Burset. Roderic Guigó, Evaluation of gene structure prediction programs. Genomics 34 (1996) 2140-2146
    • (1996) Genomics , vol.34 , pp. 2140-2146
  • 17
    • 0030810993 scopus 로고    scopus 로고
    • Finding genes in DNA with a hidden Markov model
    • Henderson J., Salzberg S., and Fasman K.H. Finding genes in DNA with a hidden Markov model. J. Comput. Biol. 4 (1997) 127-141
    • (1997) J. Comput. Biol. , vol.4 , pp. 127-141
    • Henderson, J.1    Salzberg, S.2    Fasman, K.H.3
  • 18
    • 33746604174 scopus 로고    scopus 로고
    • Chih-Chung Chang, Chih-Jen Lin, 2001. LIBSVM: a library for support vector machines. Software available at http://www.csie.ntu.edu.tw/~cjlin/libsvm.
  • 20
    • 2942527473 scopus 로고    scopus 로고
    • Gene prediction with a hidden Markov model and a new intron submodel
    • Stanke M., and Waack S. Gene prediction with a hidden Markov model and a new intron submodel. Bioinformatics 19 (2003) 215-225
    • (2003) Bioinformatics , vol.19 , pp. 215-225
    • Stanke, M.1    Waack, S.2
  • 21
    • 0035802386 scopus 로고    scopus 로고
    • Structural and functional features of eukaryotic mRNA untranslated regions
    • Pesole G., Mignone F., Gissi C., Grillo G., Licciulli F., and Liuni S. Structural and functional features of eukaryotic mRNA untranslated regions. Gene 276 (2001) 73-81
    • (2001) Gene , vol.276 , pp. 73-81
    • Pesole, G.1    Mignone, F.2    Gissi, C.3    Grillo, G.4    Licciulli, F.5    Liuni, S.6
  • 22
    • 0026039804 scopus 로고
    • Selection of splice sites in pre-mRNAs with short internal exons
    • Dominski Z., and Kole R. Selection of splice sites in pre-mRNAs with short internal exons. Mol. Cell. Biol. 11 (1991) 6075-6083
    • (1991) Mol. Cell. Biol. , vol.11 , pp. 6075-6083
    • Dominski, Z.1    Kole, R.2
  • 23
    • 0041627818 scopus 로고    scopus 로고
    • S. Ott, Y. Tamada, H. Bannai, K. Nakai, S. Miyano, Intrasplicing - analysis of long intron sequences, Proceedings of the eighth Pacific Symposium on Biocomputing (2003) 339-350.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.