Microbial community utilization of added carbon substrates in response to long-term carbon input manipulation

Soil Biology and Biochemistry

Volumn 38, Issue 8, 2006, Pages 2219-2232

  Brant, Justin B ^a   Sulzman, Elizabeth W ^a   Myrold, David D ^a  

^a OREGON STATE UNIVERSITY   (United States)

Author keywords

13C; Bacteria; Decomposition; Forest soil; Fungi; Microbial community; Phospholipid fatty acids (PLFA); Priming

Indexed keywords

BACTERIA; DECOMPOSITION; FATTY ACIDS; FORESTRY; FUNGI; MICROBIOLOGY; PHOSPHOLIPIDS; SOILS;

FOREST SOIL; MICROBIAL COMMUNITY; PHOSPHOLIPID FATTY ACIDS (PLFA); PRIMING;

CARBON;

BACTERIUM; CARBON ISOTOPE; DEGRADATION; FOREST SOIL; FUNGUS; GLUCOSE; OXALATE; PHENOL; SOIL MICROORGANISM;

BACTERIA; CARBON; FORESTS; MICROBIOLOGY; SOIL;

NORTH AMERICA; OREGON; UNITED STATES;

BACTERIA (MICROORGANISMS); CONIUM; PSEUDOTSUGA; PSEUDOTSUGA MENZIESII; TSUGA; TSUGA HETEROPHYLLA;

EID: 33746602171     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2006.01.022     Document Type: Article

References (66)

1. Aber J.D., Magill A., Boone R., Melillo J.M., Steudler P., and Bowden R. Plant and soil responses to chronic nitrogen additions at the Harvard Forest, Massachusetts. Ecological Applications 3 (1993) 156-166
2. Abraham W., Hesse C., and Pelz O. Ratios of carbon isotopes in microbial lipids as an indicator of substrate usage. Applied and Environmental Microbiology 64 (1998) 4202-4209
3. Andrén O., Brussaard L., and Clarholm M. Soil organism influence on ecosystem-level processes bypassing the ecological hierarchy?. Applied Soil Ecology 11 (1999) 177-188
4. Bååth E., and Anderson T.H. Comparision of soil fungal/bacterial ratios in a pH gradient using physiological and PLFA based techniques. Soil Biology & Biochemistry 35 (2003) 955-963
5. Bardgett R.D., Hobbs P.J., and Frostegård A. Changes in soil fungal:bacterial biomass ratios following reductions in the intensity of management of an upland grassland. Biology and Fertility of Soils 22 (1996) 261-264
6. Baudoin E., Benizri E., and Guckert A. Impact of artificial root exudates on the bacterial community structure in bulk soil and maize rhizosphere. Soil Biology & Biochemistry 35 (2003) 1183-1192
7. Bell J.M., Smith J.L., Bailey V.L., and Bolton H. Priming effect and C storage in semi-arid no-till spring crop rotations. Biology and Fertility of Soils 37 (2003) 237-244
8. Bending G.D., and Read D.J. Lignin and soluble phenolic degradation by ectomycorrhizal and ericoid mycorrhizal fungi. Mycological Research 101 (1997) 1348-1354
9. Bertin C., Yang X.H., and Weston L.A. The role of root exudates and allelochemicals in the rhizosphere. Plant and Soil 256 (2003) 67-83
10. Bligh E.G., and Dyer W.J. A rapid method of total lipid extraction and purification. Canadian Journal of Biochemistry and Physiology 37 (1959) 911-917
11. Bohlen P.J., Groffman P.M., Driscoll C.T., Fahey T.J., and Siccama T.G. Plant-soil-microbial interactions in a northern hardwood forest. Ecology 82 (2001) 965-978
12. Bowden R.D., Nadelhoffer K.J., Boone R.D., Melillo J.M., and Garrison J.B. Contributions of aboveground litter, belowground litter, and root respiration to total soil respiration in a temperature mixed hardwood forest. Canadian Journal of Forest Research 23 (1993) 1402-1407
13. Brant, J.B., Myrold, D.D., Sulzman, E.W., 2006. Root controls on soil microbial community structure in forest soils. Oecologia, in press, doi:10.1007/s00442-006-0402-7.
14. Bruulsema T.W., and Duxbury J.M. Simultaneous measurement of soil microbial nitrogen, carbon, and carbon isotope ratio. Soil Science Society of America Journal 60 (1996) 1787-1791
15. Butler J.L., Bottomley P.J., Griffith S.M., and Myrold D.D. Distribution and turnover of recently fixed photosynthate in ryegrass rhizospheres. Soil Biology & Biochemistry 36 (2004) 371-382
16. Buyer J.S., and Drinkwater L.E. Comparison of substrate utilization assay and fatty acid analysis of soil microbial communities. Journal of Microbiological Methods 30 (1997) 3-11
17. 2 on plant-soil carbon below-ground: a summary and synthesis. Plant and Soil 187 (1996) 391-400
18. Dalenberg J.W., and Jager G. Priming effect of some organic additions to C-14-labeled soil. Soil Biology & Biochemistry 21 (1989) 443-448
19. De Nobili M., Contin M., Mondini C., and Brookes P.C. Soil microbial biomass in triggered into activity by trace amounts of substrate. Soil Biology & Biochemistry 33 (2001) 1163-1170
20. DeForest J.L., Zak D.R., Pregitzer K.S., and Burton A.J. Atmospheric nitrate deposition and the microbial degradation of cellobiose and vanillin in a northern hardwood forest. Soil Biology & Biochemistry 36 (2004) 965-971
21. Dix N.J., and Webster J. Fungal Ecology (1995), Chapman and Hall, London 549 pp
22. Dixon, J.J., 2003. Applying GIS to soil geomorphologic landscape mapping in the Lookout Creek valley, Western Cascades, Oregon. M.S. Crop and Soil Science, Oregon State University, 78 pp.
23. Dutton M.V., and Evans C.S. Oxalate production by fungi: its role in pathogenicity and ecology in the soil environment. Canadian Journal of Microbiology 42 (1996) 881-895
24. Ekschmitt K., and Griffiths B.S. Soil biodiversity and its implications for ecosystem functioning in a heterogeneous and variable environment. Applied Soil Ecology 10 (1998) 201-215
25. 2 evolution and denaturing gradient gel electrophoresis profiles of bacterial communities in soil following addition of low molecular weight substrates to simulate root exudation. Soil Biology & Biochemistry 35 (2003) 775-782
26. Fisk M.C., and Fahey T.J. Microbial biomass and nitrogen cycling responses to fertilization and litter removal in young northern hardwood forests. Biogeochemistry 53 (2001) 201-223
27. Fontaine S., Mariotti A., and Abbadie L. The priming effect of organic matter: a question of microbial competition?. Soil Biology & Biochemistry 35 (2003) 837-843
28. Frey S.D., Gupta V.V.S.R., Elliott E.T., and Paustian K. Protozoan grazing affects estimates of carbon utilization efficiency of the soil microbial community. Soil Biology & Biochemistry 33 (2001) 1759-1768
29. Frey S.D., Knorr M., Parrent J.L., and Simpson R.T. Chronic nitrogen enrichment affects the structure and function of the soil microbial community in temperate hardwood and pine forests. Forest Ecology and Management 196 (2004) 159-171
30. Griffiths B.S., Ritz K., Ebblewhite N., and Dobson G. Soil microbial community structure: effects of substrate loading rates. Soil Biology & Biochemistry 31 (1999) 145-153
31. Hamer U., and Marschner B. Priming effects of sugars, amino acids, organic acids and catechol on the mineralization of lignin and peat. Journal of Plant Nutrition and Soil Science 165 (2002) 261-268
32. Hamer U., and Marschner B. Priming effects in different soil types induced by fructose, alanine, oxalic acid and catechol additions. Soil Biology & Biochemistry 37 (2005) 445-454
33. Koutny M., Ruzicka J., and Chlachula J. Screening for phenol-degrading bacteria in the pristine soils of south Siberia. Applied Soil Ecology 23 (2003) 79-83
34. Kruskal J.B. Nonmetric multidimentional scaling: a numerical method. Psychometrika 29 (1964) 115-129
35. Kuzyakov Y., and Cheng W. Photosynthesis controls of rhizosphere respiration and organic matter decomposition. Soil Biology & Biochemistry 33 (2001) 1915-1925
36. Kuzyakov Y., Friedel J.K., and Stahr K. Review of mechanisms and quantification of priming effects. Soil Biology & Biochemistry 32 (2000) 1485-1498
37. Lajtha K., Crow S.Y., Yano S.S., Kaushal E.W., Sulzman J.D.H., and Spears. Detrital controls on soil solution N and dissolved organic matter in soils: a field experiment. Biogeochemistry 76 (2005) 261-281
38. Lin Q., and Brookes P.C. Comparison of selective inhibition and biovolume measurements of microbial biomass and its community structure in unamended, ryegrass-amended, fumigated and pesticide-treated soils. Soil Biology & Biochemistry 31 (1999) 1999-2014
39. Mather P.M. Computation Methods of Multivariate Analysis in Physical Geography (1976), Wiley, London 532 pp
40. McCarthy A.J., and Williams S.T. Actinomycetes as agents of biodegradation in the environment-a review. Gene 115 (1992) 189-192
41. McMahon S.K., Williams M.A., Bottomley P.J., and Myrold D.D. Dynamics of microbial communities during decomposition of carbon-13 labeled ryegrass fractions in soil. Soil Science Society of America Journal 69 (2005) 1238-1247
42. Mielke Jr. P.W., and Berry K.J. Permutation Methods: A Distance Function Approach (2001), Springer, New York 325 pp
43. Myers R.T., Zak D.R., White D.C., and Peacock A. Landscape-level patterns of microbial community composition and substrate use in upland forest ecosystems. Soil Science Society of America Journal 65 (2001) 359-367
44. Nadelhoffer K.J., Boone R.D., Bowden R.D., Canary J.D., Kaye J., Micks P., Ricca A., Aitkenhead J.A., Lajtha K., and McDowell W.H. The DIRT experiment: litter and root influences on forest soil organic matter stocks and function. In: Foster D., and Aber J. (Eds). Forests in Time: The Environmental Consequences of 1000 Years of Change in New England (2004), Yale University Press, New Haven 300-315
45. Nguyen C., and Guckert A. Short-term utilisation of C-14-glucose by soil microorganisms in relation to carbon availability. Soil Biology & Biochemistry 33 (2001) 53-60
46. 2 and temperature: a discussion of observations, measurement methods, and models. New Phytologist 162 (2004) 311-322
47. Phillips R.L., Zak D.R., Holmes W.E., and White D.C. Microbial community composition and function beneath temperate trees exposed to elevated atmospheric carbon dioxide and ozone. Oecologia 131 (2002) 236-244
48. Sahin N. Oxalotrophic bacteria. Research in Microbiology 154 (2003) 399-407
49. Schimel J.P. Ecosystem consequences of microbial diversity and community structure. In: Chapin III F.S., and Korner C. (Eds). Arctic and Alpine Biodiversity: Patterns, Causes and Ecosystem consequences (1995), Springer, New York 239-254
50. Schimel J.P., and Gulledge J. Microbial community structure and global trace gases. Global Change Biology 4 (1998) 745-758
51. Shen J., and Bartha R. Priming effect of substrate addition in soil-based biodegradation tests. Applied and Environmental Microbiology 62 (1996) 1428-1430
52. Smith J.L., and Paul E.A. The significance of soil microbial biomass estimations. In: Bollag J., and Stotzky G. (Eds). Soil Biochemistry (1990), Mercel Dekker, New York 357-393
53. Spears J.D.H., Holub S.M., Harmon M.E., and Lajtha K. The influence of decomposing logs on soil biology and nutrient cycling in an old-growth mixed coniferous forest in Oregon, USA. Canadian Journal of Forest Research 33 (2003) 2193-2201
54. 2 efflux in an old growth coniferous forest. Biogeochemistry 73 (2005) 231-256
55. Thiet, R.K., Frey, S.D., Six, J., 2006. Do growth yield efficiencies differ between soil microbial communities differing in fungal:bacterial ratios? Reality check and methodological issues. Soil Biology & Biochemistry, in press, doi:10.1016/j.soilbio.2005.07.010.
56. Vance E.D., Brookes P.C., and Jenkinson D.S. An extraction method for measuring soil microbial biomass C. Soil Biology & Biochemistry 19 (1987) 703-707
57. Vanderbilt K.L., Lajtha K., and Swanson F.J. Biogeochemistry of unpolluted forest watersheds in Oregon Cascades: temporal patterns of precipitation and stream nitrogen fluxes. Biogeochemistry 62 (2003) 87-117
58. Wagner G.H., and Wolf D.C. Carbon transformations and soil organic matter formation. In: Sylvia D.M., Fuhrmann J.J., Hartel P.G., and Zuberer D.A. (Eds). Principles and Applications of Soil Microbiology (1999), Prentice Hall, Upper Saddle River, NJ 218-258
59. Waldrop M., Balser T., and Firestone M. Linking microbial community composition to function in a tropical soil. Soil Biology & Biochemistry 32 (2000) 1837-1846
60. Waldrop M., and Firestone M.K. Microbial community utilization of recalcitrant and simple carbon compounds: impact of oak-woodland plant communities. Oecologia 138 (2004) 275-284
61. Waldrop M.P., Zak D.R., and Sinsabaugh R.L. Microbial community response to nitrogen deposition in northern forest ecosystems. Soil Biology & Biochemistry 36 (2004) 1443-1451
62. White D.C., and Ringelberg D.B. Signature biolipid biomarker analysis. In: Burlage R.S., Burlage R.S., Atlas R., Stahl D., Geesey G., and Sayler G. (Eds). Techniques in Microbial Ecology (1998), Oxford University Press, New York 255-272
63. Wu J., Joergensen R.G., Pommerening B., Chaussod R., and Brookes P.C. Measurement of soil microbial biomass C by fumigation-extraction-an automated procedure. Soil Biology & Biochemistry 22 (1990) 1167-1169
64. Wu J.G., Brookes P.C., and Jenkinson D.S. Formation and destruction of microbial biomass during the decomposition of glucose and ryegrass in soil. Soil Biology & Biochemistry 25 (1993) 1435-1441
65. Yano Y., Lajtha K., Sollins P., and Caldwell B.A. Chemistry and dynamics of dissolved organic matter in a temperate coniferous forest on andic soils: effects of litter quality. Ecosystems 8 (2005) 286-300
66. 2 and the composition and function of soil microbial communities. Ecological Applications 10 (2000) 47-59