Consensus quantitative trait maps in maize: A database strategy

Maydica

Volumn 51, Issue 2, 2006, Pages 357-367

  Schaeffer, M ^a,b   Byrne, P ^c   Coe Jr , E H ^a,b  

^a U S DEPARTMENT OF AGRICULTURE   (United States)

^b UNIVERSITY OF MISSOURI   (United States)

^c Department of Environmental and Radiological Health Sciences   (United States)

Author keywords

Consensus; Maize; QTL; Trait ontology

Indexed keywords

INSECTA; ZEA MAYS;

EID: 33746415675     PISSN: 00256153     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (41)

1. ABLER B.S., M. EDWARDS, C.W. STUBER, 1991 Isoenzymatic identification of quantitative trait loci in crosses of elite maize in-breds. Crop Sci. 31: 267-274.
2. AGRAMA H.A., M.F., MOUSSA, 1996 Mapping QTLs in breeding for drought tolerance in maize (Zea mays L.). Euphytica 91: 89-97.
3. AJMONE-MARSAN P., G. MONFREDINI, W.F. LUDWIG, A.E. MELCHINGER, P. FRANCESCHINI, G. PAGNOTTO, M. MOTTO, 1994 Identification of genomic regions affecting plant height and their relationship with grain yield in an elite maize cross. Maydica 39: 133-139.
4. AJMONE-MARSAN P., G. MONFREDINI, W.F. LUDWIG, A.E. MELCHINGER, P. FRANCESCHINI, G. PAGNOTTO, M. MOTTO, 1995 In an elite cross of maize a major quantitative trait locus controls one-fourth of the genetic variation for grain yield. Theor. Appl. Genet. 90: 415-424.
5. ARCADE A., A. LABOURDETTE, M. FALQUE, B. MANGIN, F. CHARDON, A. CHARCOSSET, J. JOETS, 2004 BioMercator: integrating genetic maps and QTL towards discovery of candidate genes. Bioinformatics 20: 2324-2326.
6. AUSTIN D., M. LEE, 1996 Comparative mapping in F-2:3 and F-6:7 generations of quantitative trait loci for grain yield and yield components in maize. Theor. Appl. Genet. 92: 817-826.
7. AUSTIN D., M. LEE, 1998 Detection of quantitative trait loci for grain yield and yield components in maize across generations in stress and nonstress environments. Crop Sci. 38: 1296-1308.
8. BEAVIS W.D., O.S. SMITH, D. GRANT, R.R. FINCHER, 1994 Identification of quantitative trait loci using a small sample of topcrossed and F4 progeny from maize. Crop Sci. 34: 882-896.
9. BOHN M., M. KHAIRALLAH, D. GONZALEZ DE LEON, D. HOISINGTON, H. UTZ, J.A. DEUTSCH, D.C. JEWELL, J.A. MIHM, A.E. MELCHINGER, 1996 QTL mapping in tropical maize.1. Genomic regions affecting leaf feeding resistance to sugarcane borer and other traits. Crop Sci. 36: 1352-1361.
10. BOHN M., M. KHAIRALLAH, C.Z. JIANG, D. GONZALEZ DE LEON, D. HOISINGTON, H. UTZ, J.A. DEUTSCH, D.C. JEWELL, J.A. MIHM, A.H. MELCHINGER, 1997 QTL mapping in tropical maize.2. Comparison of genomic regions for resistance to Diatraea spp. Crop Sci. 37: 1892-1902.
11. BUBECK D., M.M. GOODMAN, W.D. BEAVIS, D. GRANT, 1993 Quantitative trait loci controlling resistance to gray leaf spot in maize. Crop Sci. 33: 838-847.
12. BYRNE P.F., M.B. BERLYN, E.H. COE, G.L. DAVIS, M.L. POLACCO, D.C. HANCOCK, S.I. LETOVSKY, 1995 Reporting and accessing QTL information in USDA's Maize Genome Database J. Agric. Genomics 1: 3. Full text available from http://www.cabi-publishing.org/JAG/index.html.
13. BYRNE P., M. MCMULLEN, B.R. WISEMAN, M.E. SNOOK, T. MUSKET, J. THEURI, N.W. WIDSTROM, E.JR. COE, 1998 Maize silk maysin concentration and corn earworm antibiosis: QTLs and genetic mechanisms. Crop Sci. 8: 461-471.
14. COE E., 2005 Genetic 2005 maps. http://maizegdb.org/cgi-bin/ displaymaprecord.cgi?id=940880 through 940889.
15. DAVIS G.L., M.D. MCMULLEN, C. BAYSDORFER, T. MUSKET, D. GRANT, M. STAEBELL, G. XU, M. POLACCO, L. KOSTER, S. MELIA-HANCOCK, K. HOUCHINS, S. CHAO, E.H.JR. COE, 1999 A maize map standard with sequenced core markers, grass genome reference points and 932 expressed sequence tagged sites (ESTs) in a 1736-locus map. Genetics 152: 1137-1172.
16. DE VIENNE D., A. LEONARDI, C. DAMERVAL, M. ZIVY, 1999 Genetics of proteome variation for QTL characterization: application to drought-stress responses in maize. J. Exp. Bot. 50: 303-309.
17. EMERSON R.A., G.W. BEADLE, A.C. FRASER, 1935 A summary of linkage studies in maize. Cornell Univ. Agric. Exp. Stn. Memoir 180: 1-83.
18. GARDINER J.M., E.H. COE, S. MELIA-HANCOCK, D.A. HOISINGTON, S. CHAO, 1993 Development of a core RFLP map in maize using an immortalized F2 population. Genetics 134: 917-930.
19. GENE ONTOLOGY CONSORTIUM, 2004 The Gene Ontology (GO) database and informatics resource. Nucl. Acids Res. 32: D258-261.
20. GOLDMAN I., T.R. ROCHEFORD, J.W. DUDLEY, 1993 Quantitative trait loci influencing protein and starch concentration in the Illinois long term selection maize strains. Theor. Appl. Genet. 87: 217-224.
21. GOLDMAN I., T.R. ROCHEFORD, J.W. DUDLEY, 1994 Molecular markers associated with maize kernel oil concentration in an Illinois high protein x Illinois low protein cross. Crop Sci. 34: 908-915.
22. GRAMENE, 2005 Ontology database. http://www.gramene.org/plant_ontology/ index.html.
23. HOLLICK J., 2005 Workshop: strategies for cloning maize genes. 47th Ann. Maize Genetics Conf. www.maizegdb.org/maize_meeting/2005/program.pdf.
24. KHAIRALLAH M., M. BOHN, C.Z. JIANG, J.A. DEUTSCH, D.C. JEWELL, J.A. MIHM, A.E. MELCHINGER, D. GONZALEZ DE LEON, D. HOISINGTON, 1998 Molecular mapping of QTL for southwestern corn borer resistance, plant height and flowering in tropical maize. Z. Pflanzenzuecht 117: 309-318.
25. KOZUMPLIK V., I. PEJIC, L. SENIOR, R. PAVLINA, G.I. GRAHAM, C.W. STUBER, 1996 Molecular markers for QTL detection in segregating maize populations derived from exotic germplasm. Maydica 41: 211-217.
26. LAWRENCE C.J., T.E. SEIGFRIED, V. BRENDEL, 2005 The maize genetics and genomics database. The community resource for access to diverse maize data. Plant Phyisol. 138: 55-58.
27. LEE M., N. SHAROPOVA, W.D. BEAVIS, D. GRANT, M. KATT, D. BLAIR, A. HALLAUER, 2002 Expanding the genetic map of maize with the intermated B73 x Mo17 (IBM) population. Plant Mol. Biol. 48: 453-461.
28. MELCHINGER A.E., H. UTZ, C.C. SCHON, 1998 Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and large bias in estimates of QTL effects. Genetics 149: 383-403.
29. PE M.E., L. GIANFRANCESCHI, G. TARAMINO, G. TARCHINI, P. ANGELINI, M. DANI, G. BINELLI, 1993 Mapping quantitative trait loci (QTLs) for resistance to Gibberella zeae infection in maize. Mol. Gen. Genet. 241: 11-16.
30. POLACCO M., H. SANCHEZ-VILLEDA, E.H. COE, 2003 A consensus genetic map: intermated B73 x Mo17 (IBM) neighbors. Maize Gen. Coop. Newsletter 77: 137-179.
31. PLANT ONTOLOGY™ CONSORTIUM, 2002 The Plant Ontology™ Consortium and Plant Ontologies. Comp. Funct. Genomics 3: 137-142.
32. RIBAUT J., C.Z. JIANG, D. GONZALEZ DE LEON, G.O. EDMEADES, D. HOISINGTON, 1997 Identification of quantitative trait loci under drought conditions in tropical maize. 2. Yield components and marker-assisted selection strategies. Theor. Appl. Genet. 94: 887-896.
33. SAGHAI MAROOF M.A., Y.G. YUE, Z. XIANG, E.L. STROMBERG, K. RUFENER, 1996 Identification of quantitative trait loci controlling resistance to gray leaf spot disease in maize. Theor. Appl. Genet. 93: 539-546.
34. SAWKINS M.C., A.D. FARMER, D. HOISINGTON, J. SULLIVAN, A. TOLOPKO, Z. JIANG, J.M. RIBAUT, 2004 Comparative map and trait viewer (CMTV): an integrated bioinformatic tool to construct consensus maps and compare QTL and functional genomics data across genomes and experiments. Plant Mol. Biol. 56: 465-480.
35. SCHON C.C., M. LEE, A.E. MELCHINGER, W.D. GUTHRIE, W.L. WOODMAN, 1993 Mapping and characterization of quantitative trait loci affecting resistance against 2nd-generation European corn borer in maize with the aid of RFLPs. Heredity 70: 648-659.
36. SCHON C.C., A.E. MELCHINGER, J. BOPPENMAIER, E. BRUNKLAUS-JUNG, R. HERRMANN, J.F. SEITZER, 1994 RFLP mapping in maize - quantitative trait loci affecting testcross performance of elite European flint lines. Crop Sci. 34: 378-389.
37. SHAROPOVA N., M.D. MCMULLEN, L. SCHULTZ, S. SCHROEDER, H. SANCHEZ-VILLEDA, J. GARDINER, D. BERGSTROM, K. HOUCHINS, S. MELIA-HANCOCK, T. MUSKET, N. DURU, M. POLACCO, K. EDWARDS, T. RUFF, J.C. REGISTER, C. BROUWER, R. THOMPSON, R. VELASCO, E. CHIN, M. LEE, W. WOODMAN-CLIKEMAN, M.J. LONG, E. LISCUM, K. CONE, G. DAVIS, E.H. JR. COE, 2002 Development and mapping of SSR markers for maize. Plant Mol. Biol. 48: 463-481.
38. VELDBOOM L., M. LEE, 1994 Molecular-marker-facilitated studies of morphological traits in maize. 2: Determination of QTLs for grain yield and yield components. Theor. Appl. Genet. 89: 451-458.
39. VELDBOOM L., M. LEE, 1996a Genetic mapping of quantitative trait loci in maize in stress and nonstress environments.1. Grain yield and yield components. Crop Sci. 36: 1310-1319.
40. VELDBOOM L., M. LEE, 1996b Genetic mapping of quantitative trait loci in maize in stress and nonstress environments.2. Plant height and flowering. Crop Sci. 36: 1320-1327.
41. VELDBOOM L., M. LEE, W.L. WOODMAN, 1994 Molecular marker-facilitated studies in an elite maize population: 1. Linkage analysis and determination of QTL for morphological traits. Theor. Appl. Genet. 88: 7-16.