Electron paramagnetic resonance spectroscopy as a novel approach to measure macromolecule-surface interactions and activities of extracellular enzymes

Marine Chemistry

Volumn 101, Issue 3-4, 2006, Pages 266-276

  Steen, A D ^a   Arnosti, C ^a   Ness, L ^a   Blough, N V ^b  

^a UNIVERSITY OF NORTH CAROLINA   (United States)

^b Bldg 142   (United States)

Author keywords

Dissolved organic carbon; Electron paramagnetic resonance spectroscopy; Enzyme; Hydrolases; Montmorillonite; Polysaccharides; Sorption

Indexed keywords

ELECTRON SPIN RESONANCE; ENZYME ACTIVITY; ORGANIC MATTER; POLYSACCHARIDE; SEDIMENT; SORPTION;

EID: 33746390107     PISSN: 03044203     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.marchem.2006.04.001     Document Type: Article

References (46)

1. Adachi S., and Matsuno R. Effect of eluent composition on the distribution coefficient of saccharides on to cation-exchange resin in sodium-ion form. Bioscience Biotechnology and Biochemistry 61 8 (1997) 1296-1301
2. Arnarson T.S., and Keil R.G. Mechanisms of pore water organic matter adsorption to montmorillonite. Marine Chemistry 71 (2000) 309-320
3. Arnosti C. Measurement of depth-and site-related differences in polysaccharide hydrolysis rates in marine sediments. Geochimica et Cosmochimica Acta 59 20 (1995) 4247-4257
4. Arnosti C. A new method for measuring polysaccharide hydrolysis rates in marine environments. Organic Geochemistry 25 1-2 (1996) 105-115
5. Arnosti C. Fluorescent derivatization of polysaccharides and carbohydrate-containing biopolymers for measurement of enzyme activities in complex media. Journal of Chromatography B 793 1 SU (2003) 181-191
6. Arnosti C., and Holmer M. Carbohydrate dynamics and contributions to the carbon budget of an organic-rich coastal sediment. Geochimica et Cosmochimica Acta 63 (1999) 393-403
7. Arnosti C., Repeta D.J., and Blough N.V. Rapid bacterial degradation of polysaccharides in anoxic marine systems. Geochimica et Cosmochimica Acta 58 12 (1994) 2639-2652
8. Arnosti C., Keith S.C., and Blough N.V. Application of fluorescence spectroscopic techniques and probes to the detection of biopolymer degradation in natural environments. Marine Chemistry 71 (2000) 321-330
9. Atkins P. Physical Chemistry (1998), W.H. Freeman and Company, New York 999 pp.
10. Benner R., Pakulski J.D., McCarthy M., Hedges J.I., and Hatcher P.J. Bulk chemical characteristics of dissolved organic matter in the ocean. Science 255 (1992) 1561-1564
11. Benz R., and Bauer K. Permeation of hydrophilic molecules through the outer membrane of gram-negative bacteria. European Journal of Biochemistry 176 (1988) 1-19
12. Berliner L.J. Spin Labeling: Theory and Applications. Molecular Biology vol. 1 (1976), Academic Press, New York 592 pp.
13. Bradbury M.H., and Baeyens B. Experimental measurements and modeling of sorption competition on montmorillonite. Geochimica et Cosmochimica Acta 69 17 (2005) 4187-4197
14. Chin W.-C., Orellana M.V., and Verdugo P. Spontaneous assembly of marine dissolved organic matter into polymer gels. Nature 391 (1998) 568-571
15. Collins M., Bishop A.F., and Farrimond P. Sorption by mineral surfaces-rebirth of the classical condensation pathway for kerogen formation?. Geochimica et Cosmochimica Acta 59 (1995) 2387-2391
16. Cowie G.L., Hedges J.I., Prahl F.G., and de Lange G.J. Elemental and major biochemical changes across an oxidation front in a relict turbidite: an oxygen effect. Geochimica et Cosmochimica Acta 59 1 (1995) 33-46
17. Domań-Pytka M., and Bardowski J. Pullulan degrading enzymes of bacterial origin. Critical Reviews in Microbiology 30 (2004) 107-121
18. Forrester A.R. Magnetic Properties of Free Radicals: Nitroxide Radicals. In: Fisher H. (Ed). Landolt-Börnstein Numerical Data and Functional Relationships in Science and Technology. New Series (1989), Springer-Verlag, New York 252
19. Freed J.H. Theory of slow tumbling ESR spectra for nitroxides. In: Berliner L.J. (Ed). Spin Labeling: Theory and Applications (1976), Academic Press, New York 53-132
20. Gaffney B.J. The chemistry of spin labels. In: Berliner L.J. (Ed). Spin Labeling: Theory and Applications. Molecular Biology (1976), Academic Press, New York 184-238
21. Glabe C.G., Harty P.K., and Rosen S.D. Preparation and properties of fluorescent polysaccharides. Analytical Biochemistry 130 (1983) 287-294
22. Hedges J.I. Global biogeochemical cycles: progress and problems. Marine Chemistry 39 (1992) 67-93
23. Henrichs S.M. Sedimentary organic matter preservation: an assessment and speculative synthesis-a comment. Marine Chemistry 49 (1995) 127-136
24. Hjerde T., Smidsrod O., and Christensen B.E. The influence of the conformational state of k- and i-carrageenan on the rate of acid hydrolysis. Carbohydrate Research 288 (1996) 175-187
25. Keil R.G., Montluçon D.B., Prahl F.G., and Hedges J.I. Sorptive preservation of labile organic matter in marine sediments. Nature 370 (1994) 549-552
26. Kocherginsky N., and Swartz H.M. Chemical reactivity of nitroxides. In: Kocherginsky N., and Swartz H.M. (Eds). Nitroxide Spin Labels. Reactions in Biology and Chemistry (1995), CRC Press, Boca Raton 27-66
27. In: Lide D.R. (Ed). CRC Handbook of Chemistry and Physics (2004), CRC Press, New York unpaginated pp.
28. Martinez J., and Azam F. Periplasmic aminopeptidase and alkaline phosphatase activities in a marine bacterium: Implications for substrate processing in the sea. Marine Ecology Progress Series 92 (1996) 89-97
29. Mayer L.M. Relationships between mineral surfaces and organic carbon concentrations in soils and sediments. Chemical Geology 114 (1994) 347-363
30. Mayer L.M. Surface area control of organic carbon accumulation in continental shelf sediments. Geochimica et Cosmochimica Acta 58 4 (1994) 1271-1284
31. Mayer L.M., Schick L.L., Hardy K.R., Wagai R., and McCarthy J.F. Organic matter in small mesopores in sediments and soils. Geochimica et Cosmochimica Acta 68 19 (2004) 3863-3872
32. Mudryk Z.J., and Skórczewski P. Extracellular enzyme activity at the air-water interface of an estuarine lake. Estuarine Coastal and Shelf Science 59 (2004) 59-67
33. Nordio P.L. General magnetic resonance theory. In: Berliner L.J. (Ed). Spin Labeling: Theory and Applications (1976), Academic Press, New York 5-52
34. Olness A., and Clapp C.E. Influence of polysaccharide structure on dextran adsorption by montmorillonite. Soil Biology and Biochemistry 7 2 (1975) 113-118
35. Ottaviani M.F., Cossu E., Turro N.J., and Tomalia D.A. Characterization of starburst dendrimers by electron paramagnetic resonance: 2. Positively charged nitroxide radicals of variable chain length used as spin probes. Journal of the American Chemical Society 117 (1995) 4387-4398
36. Pantoja S., Lee C., and Maracek J.F. Hydrolysis of peptides in seawater and sediment. Marine Chemistry 57 1-2 (1997) 25-40
37. Parfitt R.L., and Greenland J.D. The adsorption of poly(ethylene glycols) on clay minerals. Clay Minerals 8 (1970) 305-315
38. Ransom B., Bennett R.H., Baerwald R., and Shea K. TEM study of in situ organic matter on continental margins: occurrence and the "monolayer" hypothesis. Marine Geology 138 1-2 (1997) 1-9
39. Satterberg J., Arnarson T.S., Lessard E.J., and Keil R.G. Sorption of organic matter from four phytoplankton species to montmorillonite, chlorite, and kaolinite in seawater. Marine Chemistry 81 (2003) 11-18
40. Schwartz M.A., Parce J.W., and McConnell H.M. Hydrogen atom exchange between nitroxides and hydroxylamines. Journal of the American Chemical Society 101 13 (1979) 3592-3595
41. Somville M., and Billen G. A method for determining exoproteolytic activity in natural waters. Limnology and Oceanography 28 1 (1983) 190-193
42. Stumm W., and Morgan J.J. Aquatic Chemistry: Chemical Equilibria and Rates in Natural Waters. Environmental Science and Technology (1996), John Wiley and Sons, Inc., New York
43. Tanoue E., and Handa N. Differential sorption of organic matter by various sized sediment particles in recent sediment from the Bering Sea. Journal of the Oceanographical Society of Japan 35 (1979) 199-208
44. Theng B.K.G. Clay-polymer interactions: summary and perspectives. Clays and Clay Minerals 30 1 (1982) 1-10
45. Warren R.A.J. Microbial hydrolysis of polysaccharides. Annual Review of Microbiology 50 (1996) 183-212
46. Weil J.A., Bolton J.R., and Wertz J.E. Electron Paramagnetic Resonance: Elemental Theory and Practical Applications (1994), John Wiley & Sons, Inc 568 pp.