A second-generation integrated map of the silkworm reveals synteny and conserved gene order between lepidopteran insects

Genetics

Volumn 173, Issue 3, 2006, Pages 1319-1328

  Yasukochi, Yuji ^a   Ashakumary, Laksmikutty A ^a   Baba, Kotaro ^a   Yoshido, Atsuo ^b   Sahara, Ken ^b  

^a NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^b HOKKAIDO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CONTIG; MARKER; NUCLEOTIDE;

ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; BUTTERFLY; DATA BASE; EXPRESSED SEQUENCE TAG; GENE ORDER; GENE SEQUENCE; GENETIC LINKAGE; GENOME; INSECT; LEPIDOPTERA; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RANDOM AMPLIFIED POLYMORPHIC DNA; SEQUENCE TAGGED SITE; SILKWORM; SYNTENY;

ANIMALS; BOMBYX; CHROMOSOME MAPPING; CHROMOSOMES, ARTIFICIAL, BACTERIAL; CONSERVED SEQUENCE; CONTIG MAPPING; EXPRESSED SEQUENCE TAGS; GENETIC MARKERS; LEPIDOPTERA; SYNTENY;

BACTERIA (MICROORGANISMS); BOMBYX; BOMBYX MORI; HELICONIUS MELPOMENE; HEXAPODA; NYMPHALIDAE;

EID: 33746385498     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.106.055541     Document Type: Article

References (25)

1. BANNO, Y., H. FUJII, Y. KAWAGUCHI, K. YAMAMOTO, K. NISHIKAWA et al., 2005 A Guide to the Silkworm Mutants 2005: Gene Name and Gene Symbol. Institute of Genetic Resources, Kyushu University, Fukuoka, Japan
2. CHENG, T. C., Q. Y. XIA, J. F. QIAN, C. LIU, Y. LIN et al., 2004 Mining single nucleotide polymorphisms from EST data of silkworm, Bombyx mori, inbred strain Dazao. Insect Biochem. Mol. Biol. 34: 523-530.
3. GOLDSMITH, M. R., T. SHIMADA and H. ABE, 2004 The genetics and genomics of the silkworm, Bombyx mori. Annu. Rev. Entomol. 50: 71-100.
4. HUNT, G. J., and R. E. PAGE, 1995 Linkage map of the honey bee, Apis mellifera, based on RAPD markers. Genetics 139: 1371-1382.
5. JIGGINS, C. D., J. MAVAREZ, M. BELTRÁN, W. O. MCMILLAN, J. S. JOHNSTON et al., 2005 A genetic linkage map of the mimetic butterfly, Heliconius melpomene. Genetics 171: 557-570.
6. LANDER, E. S., P. GREEN, J. ABRAHAMSON, A. BARLOW, K. DALY et al., 1987 MAPMAKER: an interactive computer package for constructive primary genetic linkage maps of experimental and natural populations. Genomics 16: 224-230.
7. LORENZEN, M. D., Z. DOYUNGAN, J. SAVARD, K. SNOW, L. R. CRUMLY et al., 2005 Genetic linkage maps of the red flour beetle, Tribolium castaneum, based on bacterial artificial chromosomes and expressed sequence tags. Genetics 170: 741-747.
8. MIAO, X. X., S-J. XU, M-H. LI, M-W. LI, J-H. HUANG et al., 2005 Simple sequence repeat-based consensus linkage map of Bombyx mori. Proc. Natl. Acad. Sci. USA 102: 16303-16308.
9. MITA, K., M. MORIMYO, K. OKANO, Y. KOIKE, J. NOHATA et al., 2003 The construction of an EST database for Bombyx mori and its application. Proc. Natl. Acad. Sci. USA 100: 14121-14126.
10. MITA, K., M. KASAHARA, S. SASAKI, Y. NAGAYASU, T. YAMADA et al., 2004 The genome sequence of silkworm, Bombyx mori. DNA Res. 11: 27-35.
11. NGUU, E. K., K. MASE, K. KADONO-OKUDA, E. KOSEGAWA and W. HARA, 2005 Molecular linkage map for the silkworm, Bombyx mori, based on restriction fragment length polymorphism of cDNA clones. J. Insect Biotechnol. Sericology 74: 5-13.
12. PRASAD, M. D., M. MUTHULAKSHMI, M. MADHU, S. ARCHAK, K. MITA et al., 2005 Survey and analysis of microsatellites in the silkworm, Bombyx mori: frequency, distribution, mutations, marker potential and their conservation in heterologous species. Genetics 169: 197-214.
13. PROMBOON, A., T. SHIMADA, H. FUJIWARA and M. KOBAYASHI, 1995 Linkage map of random amplified polymorphic DNAs (RAPDs) in the silkworm, Bombyx mori. Genet. Res. 66: 1-7.
14. SAHARA, K., F. MAREC and W. TRAUT, 1999 TTAGG telomeric repeats in chromosomes of some insects and other arthropods. Chromosome Res. 7: 449-460.
15. SAHARA, K., A. YOSHIDO, N. KAWAMURA, A. OHNUMA, H. ABE et al., 2003 W-derived BAC probes as a new tool for identification of the W chromosome and its aberrations in Bombyx mori. Chromosoma 112: 48-55.
16. SHI, J., D. G. HECKEL and M. R. GOLDSMITH, 1995 A genetic linkage map for the domesticated silkworm, Bombyx mori, based on restriction fragment length polymorphisms. Genet. Res. 66: 109-126.
17. TAN, Y., C. WAN, Y. ZHU, C. LU, Z. XIANG et al., 2001 An amplified fragment length polymorphisms map of the silkworm. Genetics 157: 1277-1284.
18. WU, C., S. ASAKAWA, N. SHIMIZU, S. KAWASAKI and Y. YASUKOCHI, 1999 Construction and characterization of bacterial artificial chromosome libraries from the silkworm, Bombyx mori. Mol. Gen. Genet. 261: 698-706.
19. XIA, Q., Z. ZHOU, C. LU, D. CHENG, F. DAI et al., 2004 A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Science 306: 1937-1940.
20. YASUKOCHI, Y., 1998 A dense genetic map of the silkworm, Bombyx mori, covering all chromosomes based on 1018 molecular markers. Genetics 150: 1513-1525.
21. YASUKOCHI, Y., 1999 A simple and accurate method for generating co-dominant markers: an application of conformation-sensitive gel electrophoresis on the silkworm linkage analysis. Mol. Gen. Genet. 261: 796-802.
22. YASUKOCHI, Y., 2002 PCR-based screening for bacterial artificial chromosome libraries, pp. 401-410 in Methods in Molecular Biology, Vol. 192, edited by B.-Y. CHEN and H. W. JANES. Humana Press, Totowa, NJ.
23. YASUKOCHI, Y., L. ASHAKUMARY, C. WU, A. YOSHIDO, J. NOHATA et al., 2004 Organization of the Hox gene cluster of the silkworm, Bombyx mori: a split of the Hox cluster in a non-Drosophila insect. Dev. Genes Evol. 214: 606-614.
24. YASUKOCHI, Y., Y. BANNO, K. YAMAMOTO, M. R. GOLDSMITH and H. FUJII, 2005 Integration of molecular and classical linkage groups of the silkworm, Bombyx mori (n = 28). Genome 48: 626-629.
25. YOSHIDO, A., H. BANDO, Y. YASUKOCHI and K. SAHARA, 2005 The Bombyx mori karyotype and the assignment of linkage groups. Genetics 170: 675-685.