A simple and accurate method for generating co-dominant markers: An application of conformation-sensitive gel electrophoresis to linkage analysis in the silkworm

Molecular and General Genetics

Volumn 261, Issue 4-5, 1999, Pages 796-802

  Yasukochi, Y ^a  

^a NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

Author keywords

Bombyx mori; Conformation sensitive gel electrophoresis; Heteroduplex formation; Linkage analysis; Sequence tagged site

Indexed keywords

AGAROSE; POLYACRYLAMIDE GEL; UREA;

ARTICLE; CONTROLLED STUDY; GEL ELECTROPHORESIS; GENETIC LINKAGE; GENETIC POLYMORPHISM; MARKER GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SILKWORM;

ANIMALS; BASE SEQUENCE; BOMBYX; CHROMOSOME MAPPING; CLONING, MOLECULAR; CROSSES, GENETIC; DATABASES; DNA; DNA PRIMERS; ELECTROPHORESIS; FEMALE; GENES, DOMINANT; GENETIC MARKERS; INSECT PROTEINS; LINKAGE (GENETICS); MALE; NUCLEIC ACID CONFORMATION; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SENSITIVITY AND SPECIFICITY; SEQUENCE TAGGED SITES;

EID: 0033060674     PISSN: 00268925     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004380050023     Document Type: Article

References (23)

1. Antolin MF, Bosio CF, Cotton J, Sweeney W, Strand MR, Black IV WC (1996) Intensive linkage mapping in a wasp (Bracon hebetor) and a mosquito (Aedes aegypti) with single-strand conformation polymorphism analysis of random amplified polymorphic DNA markers. Genetics 143:1727-1738
2. Beckmann JS, Soller M (1990) Toward a unified approach to genetic mapping of eukaryotes based on sequence-tagged micro-satellite sites. Bio/Technology 8:930-932
3. Beier DR, Dushkin H, Sussman DJ (1992) Mapping genes in the mouse using single-strand conformation polymorphism analysis of recombinant inbred strains and interspecific crosses. Proc Natl Acad Sci USA 89:9102-9106
4. Doira H (1992) Genetical stocks and mutations of Bombyx mori: important genetic resources. Linkage maps and list of genetical stocks maintained in Kyushu University. Institute of Genetic Resources, Kyushu University
5. Ganguly A, Prockop DJ (1995) Detection of mismatched bases in double-stranded DNA by gel electrophoresis. Electrophoresis 16:1830-1835
6. Ganguly A, Rock MJ, Prockop DJ (1993) Conformation-sensitive gel electrophoresis for rapid detection of single-base differences in double-stranded PCR products and DNA fragments: evidence for solvent-induced bends in DNA heteroduplexes. Proc Natl Acad Sci USA 90:10325-10329
7. Goldsmith MR (1989) Organization and developmental timing of the Bombyx mori chorion gene clusters in strain C108. Dev Genet 10:16-23
8. Goldsmith MR, Basehoar G (1978) Organization of the chorion genes of Bombyx mori, a multigene family. I. Evidence for linkage to chromosome 2. Genetics 90:291-310
9. Hayashi K (1991) PCR-SSCP: a simple and sensitive method for detection of mutations in the genomic DNA. PCR Methods Appl 1:34-38
10. Hibner BL, Burke WD, Eickbush TH (1991) Sequence identity in an early chorion multigene family is the result of localized gene conversion. Genetics 128:595-606
11. Lander ES, Green P, Abrahamson J, Barlow A, Daly K, Lincoln SE, Newburg AL (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 16:224-230
12. Mase K, Hara W, Yamamoto T, Doira T (1996) Antennapedia variations in the E mutant group of Bombyx mori analyzed by Southern blot hybridization. J Seric Sci Jpn 65:428-435
13. Promboon A, Shimada T, Fujiwara H, Kobayashi M (1995) Linkage map of random amplified polymorphic DNAs (RAPDs) in the silkworm, Bombyx mori. Genet Res (Camb) 66:1-7
14. Sheffield VC, Cox DR, Lerman LS, Myers RM (1989) Attachment of a 40-base-pair G+C-rich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single-base changes. Proc Natl Acad Sci USA 86:232-236
15. Shi J, Heckel DG, Goldsmith MR (1995) A genetic linkage map for the domesticated silkworm, Bombyx mori, based on restriction fragment length polymorphisms. Genet Res (Camb) 66:109-126
16. Shimada T, Kobayashi M, Yoshitake N (1985) Genetical analysis of storage proteins in the silkworm, Bombyx mori (in Japanese with English summary). J Seric Sci Jpn 63:464-469
17. Spoerel N, Nguyen HT, Kafatos FC (1986) Gene regulation and evolution in the chorion locus of Bombyx mori. Structural and developmental characterization of four eggshell genes and their flanking DNA regions. J Mol Biol 190:23-35
18. Vos P, Hogers R, Bleeker M, Reijans M, Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
19. Wartell RM, Hosseini SH, Moran CP (1990) Detecting base pair substitutions in DNA fragments by temperature-gradient gel electrophoresis. Nucleic Acids Res 18:2699-2705
20. Williams JGK, Hanafey MK, Rafalski JA, Tingey SV (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18:6531-6535
21. Wu C, Asakawa S, Shimizu N, Kawasaki S, Yasukochi Y (1999) Construction and characterization of bacterial artificial chromosome libraries of the silkworm, Bombyx mori. Mol Gen Genet, in press
22. Yasukochi Y (1998) A dense genetic map of the silkworm, Bombyx mori, covering all chromosomes based on 1,018 molecular markers. Genetics 150:1513-1525
23. Yasukochi Y, Kanda T, Tamura T (1998) Cloning of two Bombyx homologues of the Drosophila rosy gene and their relationship to larval translucent skin colour mutants. Genet Res Camb 71:11-19