메뉴 건너뛰기




Volumn 30, Issue 4, 2006, Pages 241-248

Unraveling the nature of the segmentation clock: Intrinsic disorder of clock proteins and their interaction map

Author keywords

Intrinsically disordered proteins; Molecular recognition elements; Notch pathway; Segmentation clock; Somitogenesis

Indexed keywords

INTRINSICALLY DISORDERED PROTEINS; MOLECULAR RECOGNITION ELEMENTS; NOTCH PATHWAY; SEGMENTATION CLOCK; SOMITOGENESIS;

EID: 33746354305     PISSN: 14769271     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.compbiolchem.2006.04.005     Document Type: Article
Times cited : (10)

References (57)
  • 2
    • 0033104404 scopus 로고    scopus 로고
    • Dynamic expression of lunatic fringe suggests a link between Notch signaling and an autonomous cellular oscillator driving somite segmentation
    • Aulehla A., and Johnson R.L. Dynamic expression of lunatic fringe suggests a link between Notch signaling and an autonomous cellular oscillator driving somite segmentation. Dev. Biol. 207 (1999) 49-61
    • (1999) Dev. Biol. , vol.207 , pp. 49-61
    • Aulehla, A.1    Johnson, R.L.2
  • 5
    • 0030962902 scopus 로고    scopus 로고
    • Hairy mediates dominant repression in the Drosophila embryo
    • Barolo S., and Levine M. Hairy mediates dominant repression in the Drosophila embryo. EMBO J. 16 (1997) 2883-2891
    • (1997) EMBO J. , vol.16 , pp. 2883-2891
    • Barolo, S.1    Levine, M.2
  • 7
    • 0041845302 scopus 로고    scopus 로고
    • Oscillations, clocks and segmentation
    • Bessho Y., and Kageyama R. Oscillations, clocks and segmentation. Curr. Opin. Genet. Dev. 13 (2003) 379-384
    • (2003) Curr. Opin. Genet. Dev. , vol.13 , pp. 379-384
    • Bessho, Y.1    Kageyama, R.2
  • 8
    • 0035887251 scopus 로고    scopus 로고
    • Dynamic expression and essential functions of Hes7 in somite segmentation
    • Bessho Y., Sakata R., Komatsu S., Shiota K., Yamada S., and Kageyama R. Dynamic expression and essential functions of Hes7 in somite segmentation. Genes Dev. 15 (2001) 2642-2647
    • (2001) Genes Dev. , vol.15 , pp. 2642-2647
    • Bessho, Y.1    Sakata, R.2    Komatsu, S.3    Shiota, K.4    Yamada, S.5    Kageyama, R.6
  • 9
    • 0038046204 scopus 로고    scopus 로고
    • Periodic repression by the bHLH factor Hes7 is an essential mechanism for the somite segmentation clock
    • Bessho Y., Hirata H., Masamizu Y., and Kageyama R. Periodic repression by the bHLH factor Hes7 is an essential mechanism for the somite segmentation clock. Genes Dev. 17 (2003) 1451-1456
    • (2003) Genes Dev. , vol.17 , pp. 1451-1456
    • Bessho, Y.1    Hirata, H.2    Masamizu, Y.3    Kageyama, R.4
  • 13
    • 0037448536 scopus 로고    scopus 로고
    • Periodic Notch inhibition by lunatic fringe underlies the chick segmentation clock
    • Dale J.K., Maroto M., Dequeant M.L., Malapert P., McGrew M., and Pourquié O. Periodic Notch inhibition by lunatic fringe underlies the chick segmentation clock. Nature 21 (2003) 275-278
    • (2003) Nature , vol.21 , pp. 275-278
    • Dale, J.K.1    Maroto, M.2    Dequeant, M.L.3    Malapert, P.4    McGrew, M.5    Pourquié, O.6
  • 17
    • 14644435825 scopus 로고    scopus 로고
    • Intrinsically unstructured proteins and their functions
    • Dyson H.J., and Wright P.E. Intrinsically unstructured proteins and their functions. Nat. Rev. Mol. Cell. Biol. 6 (2005) 197-208
    • (2005) Nat. Rev. Mol. Cell. Biol. , vol.6 , pp. 197-208
    • Dyson, H.J.1    Wright, P.E.2
  • 18
    • 0032504991 scopus 로고    scopus 로고
    • Waves of mouse lunatic fringe expression, in four-hour cycles at two-hour intervals, precede somite boundary formation
    • Forsberg H., Crozet F., and Brown N.A. Waves of mouse lunatic fringe expression, in four-hour cycles at two-hour intervals, precede somite boundary formation. Curr. Biol. 8 (1998) 1027-1030
    • (1998) Curr. Biol. , vol.8 , pp. 1027-1030
    • Forsberg, H.1    Crozet, F.2    Brown, N.A.3
  • 20
    • 2142757231 scopus 로고    scopus 로고
    • Preformed structural elements feature in partner recognition by intrinsically unstructured proteins
    • Fuxreiter M., Simon I., Friedrich P., and Tompa P. Preformed structural elements feature in partner recognition by intrinsically unstructured proteins. J. Mol. Biol. 338 (2004) 1015-1026
    • (2004) J. Mol. Biol. , vol.338 , pp. 1015-1026
    • Fuxreiter, M.1    Simon, I.2    Friedrich, P.3    Tompa, P.4
  • 22
  • 23
    • 0034234968 scopus 로고    scopus 로고
    • Control of her1 expression during zebrafish somitogenesis by a delta-dependent oscillator and an independent wave-front activity
    • Holley S.A., Geisler R., and Nusslein-Volhard C. Control of her1 expression during zebrafish somitogenesis by a delta-dependent oscillator and an independent wave-front activity. Genes Dev. 14 (2000) 1678-1690
    • (2000) Genes Dev. , vol.14 , pp. 1678-1690
    • Holley, S.A.1    Geisler, R.2    Nusslein-Volhard, C.3
  • 24
    • 0036332729 scopus 로고    scopus 로고
    • her1 and the Notch pathway function within the oscillator mechanism that regulates zebrafish somitogenesis
    • Holley S.A., Julich D., Rauch G.J., Geisler R., and Nusslein-Volhard C. her1 and the Notch pathway function within the oscillator mechanism that regulates zebrafish somitogenesis. Development 129 (2002) 1175-1183
    • (2002) Development , vol.129 , pp. 1175-1183
    • Holley, S.A.1    Julich, D.2    Rauch, G.J.3    Geisler, R.4    Nusslein-Volhard, C.5
  • 26
    • 0034707072 scopus 로고    scopus 로고
    • Notch signalling and the synchronization of the somite segmentation clock
    • Jiang Y.J., Aerne B.L., Smithers L., Haddon C., Ish-Horowicz D., and Lewis J. Notch signalling and the synchronization of the somite segmentation clock. Nature 408 (2000) 475-479
    • (2000) Nature , vol.408 , pp. 475-479
    • Jiang, Y.J.1    Aerne, B.L.2    Smithers, L.3    Haddon, C.4    Ish-Horowicz, D.5    Lewis, J.6
  • 27
    • 0034098483 scopus 로고    scopus 로고
    • Notch signalling is required for cyclic expression of the hairy-like gene HES1 in the presomitic mesoderm
    • Jouve C., Palmeirim I., Henrique D., Beckers J., Gossler A., Ish-Horowicz D., and Pourquié O. Notch signalling is required for cyclic expression of the hairy-like gene HES1 in the presomitic mesoderm. Development 127 (2000) 1421-1429
    • (2000) Development , vol.127 , pp. 1421-1429
    • Jouve, C.1    Palmeirim, I.2    Henrique, D.3    Beckers, J.4    Gossler, A.5    Ish-Horowicz, D.6    Pourquié, O.7
  • 28
    • 0034331260 scopus 로고    scopus 로고
    • Oscillating expression of c-Hey2 in the presomitic mesoderm suggests that the segmentation clock may use combinatorial signaling through multiple interacting bHLH factors
    • Leimeister C., Dale K., Fischer A., Klamt B., Hrabê de Angelis M., Radtke F., McGrew M.J., Pourquié O., and Gessler M. Oscillating expression of c-Hey2 in the presomitic mesoderm suggests that the segmentation clock may use combinatorial signaling through multiple interacting bHLH factors. Dev. Biol. 227 (2000) 91-103
    • (2000) Dev. Biol. , vol.227 , pp. 91-103
    • Leimeister, C.1    Dale, K.2    Fischer, A.3    Klamt, B.4    Hrabê de Angelis, M.5    Radtke, F.6    McGrew, M.J.7    Pourquié, O.8    Gessler, M.9
  • 29
    • 0041677612 scopus 로고    scopus 로고
    • Autoinhibition with transcriptional delay: a simple mechanism for the zebrafish somitogenesis oscillator
    • Lewis J. Autoinhibition with transcriptional delay: a simple mechanism for the zebrafish somitogenesis oscillator. Curr. Biol. 13 (2003) 1398-1408
    • (2003) Curr. Biol. , vol.13 , pp. 1398-1408
    • Lewis, J.1
  • 30
    • 9644252804 scopus 로고    scopus 로고
    • Characterization of segments from the central region of BRCA1: an intrinsically disordered scaffold for multiple protein-protein and protein-DNA interactions?
    • Mark W.Y., Liao J.C., Lu Y., Ayed A., Laister R., Szymczyna B., Chakrabartty A., and Arrowsmith C.H. Characterization of segments from the central region of BRCA1: an intrinsically disordered scaffold for multiple protein-protein and protein-DNA interactions?. J. Mol. Biol. 345 (2005) 275-287
    • (2005) J. Mol. Biol. , vol.345 , pp. 275-287
    • Mark, W.Y.1    Liao, J.C.2    Lu, Y.3    Ayed, A.4    Laister, R.5    Szymczyna, B.6    Chakrabartty, A.7    Arrowsmith, C.H.8
  • 31
    • 21444449061 scopus 로고    scopus 로고
    • Synchronised cycling gene oscillations in presomitic mesoderm cells require cell-cell contact
    • Maroto M., Dale J.K., Dequeant M.L., Petit A.C., and Pourquié O. Synchronised cycling gene oscillations in presomitic mesoderm cells require cell-cell contact. Int. J. Dev. Biol. 49 (2005) 309-315
    • (2005) Int. J. Dev. Biol. , vol.49 , pp. 309-315
    • Maroto, M.1    Dale, J.K.2    Dequeant, M.L.3    Petit, A.C.4    Pourquié, O.5
  • 32
    • 13144297173 scopus 로고    scopus 로고
    • The lunatic fringe gene is a target of the molecular clock linked to somite segmentation in avian embryos
    • McGrew M.J., Dale J.K., Fraboulet S., and Pourquie O. The lunatic fringe gene is a target of the molecular clock linked to somite segmentation in avian embryos. Curr. Biol. 8 (1998) 979-982
    • (1998) Curr. Biol. , vol.8 , pp. 979-982
    • McGrew, M.J.1    Dale, J.K.2    Fraboulet, S.3    Pourquie, O.4
  • 33
    • 29544433937 scopus 로고    scopus 로고
    • Macromolecular crowding in the Escherichia coli periplasm maintains alpha-synuclein disorder
    • McNulty B.C., Young G.B., and Pielak G.J. Macromolecular crowding in the Escherichia coli periplasm maintains alpha-synuclein disorder. J. Mol. Biol. 355 (2006) 893-897
    • (2006) J. Mol. Biol. , vol.355 , pp. 893-897
    • McNulty, B.C.1    Young, G.B.2    Pielak, G.J.3
  • 34
    • 19644371990 scopus 로고    scopus 로고
    • The Mesp2 transcription factor establishes segmental borders by suppressing Notch activity
    • Morimoto M., Takahashi Y., Endo M., and Saga Y. The Mesp2 transcription factor establishes segmental borders by suppressing Notch activity. Nature 435 (2005) 354-359
    • (2005) Nature , vol.435 , pp. 354-359
    • Morimoto, M.1    Takahashi, Y.2    Endo, M.3    Saga, Y.4
  • 35
    • 0035984002 scopus 로고    scopus 로고
    • Hairy/E(spl)-related (Her) genes are central components of the segmentation oscillator and display redundancy with the Delta/Notch signaling pathway in the formation of anterior segmental boundaries in the zebrafish
    • Oates A.C., and Ho R.K. Hairy/E(spl)-related (Her) genes are central components of the segmentation oscillator and display redundancy with the Delta/Notch signaling pathway in the formation of anterior segmental boundaries in the zebrafish. Development 129 (2002) 2929-2946
    • (2002) Development , vol.129 , pp. 2929-2946
    • Oates, A.C.1    Ho, R.K.2
  • 37
    • 24944546549 scopus 로고    scopus 로고
    • Coupled folding and binding with alpha-helix-forming molecular recognition elements
    • Oldfield C.J., Cheng Y., Cortese M.S., Romero P., Uversky V.N., and Dunker A.K. Coupled folding and binding with alpha-helix-forming molecular recognition elements. Biochemistry 44 (2005) 12454-12470
    • (2005) Biochemistry , vol.44 , pp. 12454-12470
    • Oldfield, C.J.1    Cheng, Y.2    Cortese, M.S.3    Romero, P.4    Uversky, V.N.5    Dunker, A.K.6
  • 38
    • 0030840351 scopus 로고    scopus 로고
    • Avian hairy gene expression identifies a molecular clock linked to vertebrate segmentation and somitogenesis
    • Palmeirim I., Henrique D., Ish-Horowicz D., and Pourquié O. Avian hairy gene expression identifies a molecular clock linked to vertebrate segmentation and somitogenesis. Cell 91 (1997) 639-648
    • (1997) Cell , vol.91 , pp. 639-648
    • Palmeirim, I.1    Henrique, D.2    Ish-Horowicz, D.3    Pourquié, O.4
  • 40
    • 0038115065 scopus 로고    scopus 로고
    • The segmentation clock: converting embryonic time into spatial pattern
    • Pourquié O. The segmentation clock: converting embryonic time into spatial pattern. Science 301 (2003) 328-330
    • (2003) Science , vol.301 , pp. 328-330
    • Pourquié, O.1
  • 41
    • 33645292569 scopus 로고    scopus 로고
    • Calmodulin signaling: analysis and prediction of a disorder-dependent molecular recognition
    • Radivojac P., Vucetic S., O'Connor T.R., Uversky V.N., Obradovic Z., and Dunker A.K. Calmodulin signaling: analysis and prediction of a disorder-dependent molecular recognition. Proteins 63 (2006) 398-410
    • (2006) Proteins , vol.63 , pp. 398-410
    • Radivojac, P.1    Vucetic, S.2    O'Connor, T.R.3    Uversky, V.N.4    Obradovic, Z.5    Dunker, A.K.6
  • 42
    • 0346362323 scopus 로고    scopus 로고
    • A Notch feeling of somite segmentation and beyond
    • Rida P.C., Le Minh N., and Jiang Y.J. A Notch feeling of somite segmentation and beyond. Dev. Biol. 265 (2004) 2-22
    • (2004) Dev. Biol. , vol.265 , pp. 2-22
    • Rida, P.C.1    Le Minh, N.2    Jiang, Y.J.3
  • 44
    • 0035514186 scopus 로고    scopus 로고
    • The making of the somite: molecular events in vertebrate segmentation
    • Saga Y., and Takeda H. The making of the somite: molecular events in vertebrate segmentation. Nat. Rev. Genet. 2 (2001) 835-845
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 835-845
    • Saga, Y.1    Takeda, H.2
  • 45
    • 0036332465 scopus 로고    scopus 로고
    • Models for pattern formation in somitogenesis: a marriage of cellular and molecular biology
    • Schnell S., Maini P.K., McInerney D., Gavaghan D.J., and Houston P. Models for pattern formation in somitogenesis: a marriage of cellular and molecular biology. C. R. Biologies 325 (2002) 179-189
    • (2002) C. R. Biologies , vol.325 , pp. 179-189
    • Schnell, S.1    Maini, P.K.2    McInerney, D.3    Gavaghan, D.J.4    Houston, P.5
  • 46
    • 0034126335 scopus 로고    scopus 로고
    • Clock and induction model for somitogenesis
    • Schnell S., and Maini P.K. Clock and induction model for somitogenesis. Dev. Dyn. 217 (2000) 415-420
    • (2000) Dev. Dyn. , vol.217 , pp. 415-420
    • Schnell, S.1    Maini, P.K.2
  • 47
    • 0028111932 scopus 로고
    • Structure, chromosomal locus, and promoter analysis of the gene encoding the mouse helix-loop-helix factor HES-1. Negative autoregulation through the multiple N box elements
    • Takebayashi K., Sasai Y., Sakai Y., Watanabe T., Nakanishi S., and Kageyama R. Structure, chromosomal locus, and promoter analysis of the gene encoding the mouse helix-loop-helix factor HES-1. Negative autoregulation through the multiple N box elements. J. Biol. Chem. 269 (1994) 5150-5156
    • (1994) J. Biol. Chem. , vol.269 , pp. 5150-5156
    • Takebayashi, K.1    Sasai, Y.2    Sakai, Y.3    Watanabe, T.4    Nakanishi, S.5    Kageyama, R.6
  • 48
    • 0141613751 scopus 로고    scopus 로고
    • Feedback loops comprising Dll1, Dll3 and Mesp2, and differential involvement of Psen1 are essential for rostrocaudal patterning of somites
    • Takahashi Y., Inoue T., Gossler A., and Saga Y. Feedback loops comprising Dll1, Dll3 and Mesp2, and differential involvement of Psen1 are essential for rostrocaudal patterning of somites. Development 130 (2003) 4259-4268
    • (2003) Development , vol.130 , pp. 4259-4268
    • Takahashi, Y.1    Inoue, T.2    Gossler, A.3    Saga, Y.4
  • 49
    • 3242892063 scopus 로고    scopus 로고
    • ADVICE: automated detection and validation of interaction by co-evolution
    • Tan S.H., Zhang Z., and Ng S.K. ADVICE: automated detection and validation of interaction by co-evolution. Nucleic Acids Res. 32 (2004) W69-W72
    • (2004) Nucleic Acids Res. , vol.32
    • Tan, S.H.1    Zhang, Z.2    Ng, S.K.3
  • 50
    • 0036803243 scopus 로고    scopus 로고
    • Intrinsically unstructured proteins
    • Tompa P. Intrinsically unstructured proteins. Trends Biochem. Sci. 27 (2002) 527-533
    • (2002) Trends Biochem. Sci. , vol.27 , pp. 527-533
    • Tompa, P.1
  • 51
    • 20444376186 scopus 로고    scopus 로고
    • The interplay between structure and function in intrinsically unstructured proteins
    • Tompa P. The interplay between structure and function in intrinsically unstructured proteins. FEBS Lett. 579 (2005) 3346-3354
    • (2005) FEBS Lett. , vol.579 , pp. 3346-3354
    • Tompa, P.1
  • 52
    • 0034669882 scopus 로고    scopus 로고
    • Why are 'natively unfolded' proteins unstructured under physiologic conditions?
    • Uversky V.N., Gillespie J.R., and Fink A.L. Why are 'natively unfolded' proteins unstructured under physiologic conditions?. Proteins 41 (2000) 415-427
    • (2000) Proteins , vol.41 , pp. 415-427
    • Uversky, V.N.1    Gillespie, J.R.2    Fink, A.L.3
  • 53
    • 25144472591 scopus 로고    scopus 로고
    • Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling
    • Uversky V.N., Oldfield C.J., and Dunker A.K. Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling. J. Mol. Recognit. 18 (2005) 343-384
    • (2005) J. Mol. Recognit. , vol.18 , pp. 343-384
    • Uversky, V.N.1    Oldfield, C.J.2    Dunker, A.K.3
  • 54
    • 0028361031 scopus 로고
    • Accuracy of protein flexibility predictions
    • Vihinen M., Torkkila E., and Riikonen P. Accuracy of protein flexibility predictions. Proteins 19 (1994) 141-149
    • (1994) Proteins , vol.19 , pp. 141-149
    • Vihinen, M.1    Torkkila, E.2    Riikonen, P.3
  • 55
    • 1542358787 scopus 로고    scopus 로고
    • Prediction and functional analysis of native disorder in proteins from the three kingdoms of life
    • Ward J.J., Sodhi J.S., McGuffin L.J., Buxton B.F., and Jones D.T. Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. J. Mol. Biol. 337 (2004) 635-645
    • (2004) J. Mol. Biol. , vol.337 , pp. 635-645
    • Ward, J.J.1    Sodhi, J.S.2    McGuffin, L.J.3    Buxton, B.F.4    Jones, D.T.5
  • 56
    • 0028501914 scopus 로고
    • Non-globular domains in protein sequences: automated segmentation using complexity measures
    • Wootton J.C. Non-globular domains in protein sequences: automated segmentation using complexity measures. Comput. Chem. 18 (1994) 269-285
    • (1994) Comput. Chem. , vol.18 , pp. 269-285
    • Wootton, J.C.1
  • 57
    • 0032749078 scopus 로고    scopus 로고
    • Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm
    • Wright P.E., and Dyson H.J. Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm. J. Mol. Biol. 293 (1999) 321-331
    • (1999) J. Mol. Biol. , vol.293 , pp. 321-331
    • Wright, P.E.1    Dyson, H.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.