Ornithinimicrobium kibberense sp. nov., isolated from the Indian Himalayas

International Journal of Systematic and Evolutionary Microbiology

Volumn 56, Issue 7, 2006, Pages 1657-1661

  Mayilraj, S ^a   Saha, P ^a   Suresh, K ^a   Saini, H S ^b  

^a INSTITUTE OF MICROBIAL TECHNOLOGY   (India)

^b GURU NANAK DEV UNIVERSITY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; DECANOIC ACID DERIVATIVE; FATTY ACID DERIVATIVE; GENOMIC DNA; GUANINE; MYRISTIC ACID DERIVATIVE; PALMITIC ACID DERIVATIVE;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; CONTROLLED STUDY; DNA CONTENT; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GENUS; INDIA; MICROCOCCUS; NEW SPECIES; NOMENCLATURE; NONHUMAN; NUCLEOTIDE SEQUENCE; ORNITHINIMICROBIUM HUMIPHILUM; ORNITHINIMICROBIUM KIBBERENSE; PHENOTYPE; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

ACTINOMYCETALES; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CARBOHYDRATE METABOLISM; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; INDIA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; PIGMENTS, BIOLOGICAL; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SOIL MICROBIOLOGY;

BACTERIA (MICROORGANISMS); ORNITHINIMICROBIUM; ORNITHINIMICROBIUM HUMIPHILUM;

EID: 33746238196     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64138-0     Document Type: Article

References (33)

1. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
2. Bergey, D. H., Harrison, F. C., Breed, R. S., Hammer, B. W. & Huntoon, F. M. (1923). Bergey's Manual of Determinative Bacteriology. Baltimore: Williams & Wilkins.
3. AL. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1105-1139. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
4. Collins, M. D., Routh, J., Saraswathy, A., Lawson, P. A., Schumann, P., Welinder-Olsson, C. & Falsen, E. (2004). Arsenicicoccus bolidensis gen. nov., sp. nov., a novel actinomycete isolated from contaminated lake sediment. Int J Syst Evol Microbiol 54, 605-608.
5. Cowan, S. T. & Steel, K. J. (1965). Manual for the Identification of Medical Bacteria. London: Cambridge University Press.
6. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
7. Groth, I., Schumann, P., Martin, K., Schuetze, B., Augsten, K., Kramer, I. & Stackebrandt, E. (1999). Ornithinicoccus hortensis gen. nov., sp. nov., a soil actinomycete which contains L-ornithine. Int J Syst Bacteriol 49, 1717-1724.
8. Groth, I., Schumann, P., Weiss, N., Schuetze, B., Augsten, K. & Stackebrandt, E. (2001). Ornithinimicrobium humiphilum gen. nov., sp. nov., a soil actinomycete with L-ornithine in the peptidoglycan. Int J Syst Evol Microbiol 51, 81-87.
9. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleoticle sequences. J Mol Evol 16, 111-120.
10. Mandel, M. & Marmur, J. (1968). Use of ultraviolet absorbance-temperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 12B, 195-206.
11. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, K. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
12. Murray, R. G. E., Doetsch, R. N. & Robinow, C. F. (1994). Determinative and cytological light microscopy. In Methods for General and Molecular Bacteriology, pp. 21-41. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
13. Orla-Jensen, S. (1919). The Lactic Acid Bacteria. Copenhagen: Høst.
14. Pandey, K. K., Mayilraj, S. & Chakrabarti, T. (2002). Pseudomonas indica sp. nov., a novel butane-utilizing species. Int J Syst Evol Microbiol 52, 1559-1567.
15. Rainey, F. A., Ward-Rainey, N., Kroppenstedt, R. M. & Stackebrandt, E. (1996). The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46, 1088-1092.
16. Reddy, G. S. N., Prakash, J. S. S., Prabahar, V., Matsumoto, G. I., Stackebrandt, E. & Shivaji, S. (2003). Kocuria polaris sp. nov., an orange-pigmented psychrophilic bacterium isolated from an Antarctic cyanobacterial mat sample. Int J Syst Evol Microbiol 53, 183-187.
17. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
18. Schleifer, K. H. (1985). Analysis of the chemical composition and primary structure of murein. Methods Microbiol 18, 123-156.
19. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
20. Sheridan, P. P., Loveland-Curtze, J., Miteva, I. V. & Brenchley, E. J. (2003). Rhodoglobus vestalii gen. nov., sp. nov., a novel psychrophilic organism isolated from an Antarctic Dry Valley lake. Int J Syst Evol Microbiol 53, 985-994.
21. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
22. Smith, N. R., Gordon, R. E. & Clark, F. E. (1952). Aerobic sporeforming bacteria. US Department of Agriculture Agricultural Monograph no. 16. Washington, DC: US Department of Agriculture.
23. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. (1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479-491.
24. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
25. Takeuchi, M. & Hatano, K. (1998). Union of the genera Microbacterium Orla-Jensen and Aureobacterium Collins et al. in a redefined genus Microbacterium. Int J Syst Bacteriol 48, 739-747.
26. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
27. Tourova, T. P. & Antonov, A. S. (1987). Identification of micro-organisms by rapid DNA-DNA hybridization. Methods Microbiol 19, 333-355.
28. Uchida, K., Kudo, T., Suzuki, K. I. & Nakase, T. (1999). A new rapid method of glycolate test by diethyl ether extraction, which is applicable to a small amount of bacterial cells of less than one milligram. J Gen Appl Microbiol 45, 49-56.
29. Von Wintzingerode, F., Gobel, U. B., Siddiqui, R. A., Rosick, U., Schumann, P., Fruhling, A., Rohde, M., Pukall, R. & Stackebrandt, E. (2001). Solana multivorans gen. nov., sp. nov., a novel actinobacterium isolated from an anaerobic bioreactor and capable of selenate reduction. Int J Syst Evol Microbial 51, 1653-1661.
30. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
31. Yamada, K. & Komagata, K. (1972). Taxonomic studies on coryneform bacteria. V. Classification of coryneform bacteria. J Gen Appl Microbiol 18, 417-431.
32. Yamamoto, N., Sato, S., Saito, K., Hasuo, T., Tadenuma, M., Suzuki, K., Tamaoka, J. & Komagata, K. (1988). Rarobacter faecitabidus gen. nov., sp. nov., a yeast-lysing coryneform bacterium. Int J Syst Bacteriol 38, 7-11.
33. Yi, H., Schumann, P., Sohn, K. & Chun, J. (2004). Serinicoccus marinus gen. nov., sp. nov., a novel actinomycete with L-ornithine and L-serine in the peptidoglycan. Int J Syst Evol Microbiol 54, 1585-1589.