-
1
-
-
0024505928
-
Helix-turn-helix, zinc-finger, and leucine-zipper motifs for eucaryotic transcriptional regulatory proteins
-
Struhl K. Helix-turn-helix, zinc-finger, and leucine-zipper motifs for eucaryotic transcriptional regulatory proteins. Trends Biochem. Sci. 14 (1989) 137-140
-
(1989)
Trends Biochem. Sci.
, vol.14
, pp. 137-140
-
-
Struhl, K.1
-
2
-
-
0024295767
-
The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins
-
Landschulz W.H., Johnson P.F., and McKnight S.L. The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins. Science 240 (1988) 1759-1764
-
(1988)
Science
, vol.240
, pp. 1759-1764
-
-
Landschulz, W.H.1
Johnson, P.F.2
McKnight, S.L.3
-
3
-
-
0027049805
-
The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted a helices: crystal structure of the protein-DNA complex
-
Ellenberger T.E., Brandl C.J., Struhl K., and Harrison S.C. The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted a helices: crystal structure of the protein-DNA complex. Cell 71 (1992) 1223-1237
-
(1992)
Cell
, vol.71
, pp. 1223-1237
-
-
Ellenberger, T.E.1
Brandl, C.J.2
Struhl, K.3
Harrison, S.C.4
-
4
-
-
0027377202
-
The X-ray structure of the GCN4-bZIP bound to ATF/CREB site DNA shows the complex depends on DNA flexibility
-
König P., and Richmond T.J. The X-ray structure of the GCN4-bZIP bound to ATF/CREB site DNA shows the complex depends on DNA flexibility. J. Mol. Biol. 233 (1993) 139-154
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 139-154
-
-
König, P.1
Richmond, T.J.2
-
5
-
-
0029563634
-
Crystal structure of a bZIP/DNA Complex at 2.2 Å: determinants of DNA specific recognition
-
Keller W., König P., and Richmond T.J. Crystal structure of a bZIP/DNA Complex at 2.2 Å: determinants of DNA specific recognition. J. Mol. Biol. 254 (1995) 657-667
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 657-667
-
-
Keller, W.1
König, P.2
Richmond, T.J.3
-
6
-
-
0028894384
-
Crystal structure of the heterodimeric bZIP transcription factor c-Fos-c-Jun bound to DNA
-
Glover J.N.M., and Harrison S.C. Crystal structure of the heterodimeric bZIP transcription factor c-Fos-c-Jun bound to DNA. Nature 373 (1995) 257-261
-
(1995)
Nature
, vol.373
, pp. 257-261
-
-
Glover, J.N.M.1
Harrison, S.C.2
-
7
-
-
0034051459
-
Short, hydrophobic, alanine-based proteins based on the bZIP motif: overcoming inclusion body formation and protein aggregation during overexpression, purification, and renaturation
-
Lajmi A.R., Wallace T.R., and Shin J.A. Short, hydrophobic, alanine-based proteins based on the bZIP motif: overcoming inclusion body formation and protein aggregation during overexpression, purification, and renaturation. Protein Expr. Purif. 18 (2000) 394-403
-
(2000)
Protein Expr. Purif.
, vol.18
, pp. 394-403
-
-
Lajmi, A.R.1
Wallace, T.R.2
Shin, J.A.3
-
8
-
-
0034647207
-
Minimalist, alanine-based, helical protein dimers bind to specific DNA sites
-
Lajmi A.R., Lovrencic M.E., Wallace T.R., Thomlinson R.R., and Shin J.A. Minimalist, alanine-based, helical protein dimers bind to specific DNA sites. J. Am. Chem. Soc. 122 (2000) 5638-5639
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 5638-5639
-
-
Lajmi, A.R.1
Lovrencic, M.E.2
Wallace, T.R.3
Thomlinson, R.R.4
Shin, J.A.5
-
9
-
-
0022981167
-
Saturation mutagenesis of the yeast his3 regulatory site: requirements for transcriptional induction and for binding by GCN4 activator protein
-
Hill D.E., Hope I.A., Macke J.P., and Struhl K. Saturation mutagenesis of the yeast his3 regulatory site: requirements for transcriptional induction and for binding by GCN4 activator protein. Science 234 (1986) 451-457
-
(1986)
Science
, vol.234
, pp. 451-457
-
-
Hill, D.E.1
Hope, I.A.2
Macke, J.P.3
Struhl, K.4
-
10
-
-
0024331502
-
Cognate DNA binding specificity retained after leucine zipper exchange between GCN4 and C/EBP
-
Agre P., Johnson P.F., and McKnight S.L. Cognate DNA binding specificity retained after leucine zipper exchange between GCN4 and C/EBP. Science 246 (1989) 922-926
-
(1989)
Science
, vol.246
, pp. 922-926
-
-
Agre, P.1
Johnson, P.F.2
McKnight, S.L.3
-
11
-
-
0037026871
-
Sequence-specific recognition of DNA by hydrophobic, alanine-scanning mutants of the bZIP motif investigated by fluorescence anisotropy
-
Bird G.H., Lajmi A.R., and Shin J.A. Sequence-specific recognition of DNA by hydrophobic, alanine-scanning mutants of the bZIP motif investigated by fluorescence anisotropy. Biopolymers 65 (2002) 10-20
-
(2002)
Biopolymers
, vol.65
, pp. 10-20
-
-
Bird, G.H.1
Lajmi, A.R.2
Shin, J.A.3
-
12
-
-
0037013984
-
MALDI-TOF mass spectrometry characterization of hydrophobic basic region/leucine zipper proteins
-
Bird G.H., and Shin J.A. MALDI-TOF mass spectrometry characterization of hydrophobic basic region/leucine zipper proteins. Biochim. Biophys. Acta 1597 (2002) 252-259
-
(2002)
Biochim. Biophys. Acta
, vol.1597
, pp. 252-259
-
-
Bird, G.H.1
Shin, J.A.2
-
13
-
-
0029916225
-
Control of aggregation in protein refolding: the temperature-leap tactic
-
Xie Y., and Wetlaufer D.B. Control of aggregation in protein refolding: the temperature-leap tactic. Protein Sci. 5 (1996) 517-523
-
(1996)
Protein Sci.
, vol.5
, pp. 517-523
-
-
Xie, Y.1
Wetlaufer, D.B.2
-
14
-
-
0036137622
-
Manipulation of temperature improves solubility of hydrophobic proteins and cocrystallization with matrix for analysis by MALDI-TOF mass spectrometry
-
Bird G.H., Lajmi A.R., and Shin J.A. Manipulation of temperature improves solubility of hydrophobic proteins and cocrystallization with matrix for analysis by MALDI-TOF mass spectrometry. Anal. Chem. 74 (2002) 219-225
-
(2002)
Anal. Chem.
, vol.74
, pp. 219-225
-
-
Bird, G.H.1
Lajmi, A.R.2
Shin, J.A.3
-
15
-
-
0028533280
-
Distribution of labor among bZIP segments in the control of DNA affinity and specificity
-
Metallo S.J., and Schepartz A. Distribution of labor among bZIP segments in the control of DNA affinity and specificity. Chem. Biol. 1 (1994) 143-151
-
(1994)
Chem. Biol.
, vol.1
, pp. 143-151
-
-
Metallo, S.J.1
Schepartz, A.2
-
16
-
-
0024370748
-
Scissors-grip model for DNA recognition by a family of leucine zipper proteins
-
Vinson C.R., Sigler P.B., and McKnight S.L. Scissors-grip model for DNA recognition by a family of leucine zipper proteins. Science 246 (1989) 911-916
-
(1989)
Science
, vol.246
, pp. 911-916
-
-
Vinson, C.R.1
Sigler, P.B.2
McKnight, S.L.3
-
17
-
-
0024315267
-
Molecular mechanisms of transcriptional regulation in yeast
-
Struhl K. Molecular mechanisms of transcriptional regulation in yeast. Annu. Rev. Biochem. 58 (1989) 1051
-
(1989)
Annu. Rev. Biochem.
, vol.58
, pp. 1051
-
-
Struhl, K.1
-
18
-
-
0037462459
-
X-ray structure of Myc-Max and Mad-Max recognizing DNA: molecular bases of regulation by proto-oncogenic transcription factors
-
Nair S.K., and Burley S.K. X-ray structure of Myc-Max and Mad-Max recognizing DNA: molecular bases of regulation by proto-oncogenic transcription factors. Cell 112 (2003) 193-205
-
(2003)
Cell
, vol.112
, pp. 193-205
-
-
Nair, S.K.1
Burley, S.K.2
-
19
-
-
0033968093
-
Gene-target recognition among members of the Myc superfamily and implications for oncogenesis
-
O'Hagan R.C., Schreiber-Agus N., Chen K., David G., Engelman J.A., Schwab R., Alland L., Thomson C., Ronning D.R., Sacchettini J.C., Meltzer P., and DePinho R.A. Gene-target recognition among members of the Myc superfamily and implications for oncogenesis. Nat. Genet. 24 (2000) 113-119
-
(2000)
Nat. Genet.
, vol.24
, pp. 113-119
-
-
O'Hagan, R.C.1
Schreiber-Agus, N.2
Chen, K.3
David, G.4
Engelman, J.A.5
Schwab, R.6
Alland, L.7
Thomson, C.8
Ronning, D.R.9
Sacchettini, J.C.10
Meltzer, P.11
DePinho, R.A.12
-
20
-
-
0029789568
-
Functional interference between hypoxia and dioxin signal transduction pathways: competition for recruitment of the arnt transcription factor
-
Gradin K., McGuire J., Wenger R.H., Kvietikova I., Whitelaw M.L., Toftgård R., Tora T., Gassmann M., and Poellinger L. Functional interference between hypoxia and dioxin signal transduction pathways: competition for recruitment of the arnt transcription factor. Mol. Cell. Biol. 16 (1996) 5221-5231
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 5221-5231
-
-
Gradin, K.1
McGuire, J.2
Wenger, R.H.3
Kvietikova, I.4
Whitelaw, M.L.5
Toftgård, R.6
Tora, T.7
Gassmann, M.8
Poellinger, L.9
-
21
-
-
0028084338
-
Myc-Max-Mad: a transcription factor network controlling cell cycle progression, differentiation and death
-
Amati B., and Land H. Myc-Max-Mad: a transcription factor network controlling cell cycle progression, differentiation and death. Curr. Opin. Gene. Dev. 4 (1994) 102-108
-
(1994)
Curr. Opin. Gene. Dev.
, vol.4
, pp. 102-108
-
-
Amati, B.1
Land, H.2
-
22
-
-
0038523952
-
Genomic binding by the Drosophila Myc, Max, Mad/Mnt transcription factor network
-
Orian A., van Steensel B., Delrow J., Bussemaker H.J., Li L., Sawado T., Williams E., Loo L.W.M., Cowley S.M., Yost C., Pierce S., Edgar B.A., Parkhurst S.M., and Eisenman R.N. Genomic binding by the Drosophila Myc, Max, Mad/Mnt transcription factor network. Genes Dev. 17 (2003) 1101-1114
-
(2003)
Genes Dev.
, vol.17
, pp. 1101-1114
-
-
Orian, A.1
van Steensel, B.2
Delrow, J.3
Bussemaker, H.J.4
Li, L.5
Sawado, T.6
Williams, E.7
Loo, L.W.M.8
Cowley, S.M.9
Yost, C.10
Pierce, S.11
Edgar, B.A.12
Parkhurst, S.M.13
Eisenman, R.N.14
-
23
-
-
0027546614
-
c-Myc transactivates the p53 promoter through a required downstream CACGTG motif
-
Reisman D., Elkind N.B., Roy B., Beamon J., and Rotter V. c-Myc transactivates the p53 promoter through a required downstream CACGTG motif. Cell Growth Differ. 4 (1993) 57-65
-
(1993)
Cell Growth Differ.
, vol.4
, pp. 57-65
-
-
Reisman, D.1
Elkind, N.B.2
Roy, B.3
Beamon, J.4
Rotter, V.5
-
24
-
-
0030887045
-
Characterization of a subset of the basic-helix-loop-helix-PAS superfamily that interacts with components of the dioxin signaling pathway
-
Hogenesch J.B., Chan W.K., Jackiw V.H., Brown R.C., Gu Y.-Z., Pray-Grant M., Perdew G.H., and Bradfield C.A. Characterization of a subset of the basic-helix-loop-helix-PAS superfamily that interacts with components of the dioxin signaling pathway. J. Biol. Chem. 272 (1997) 8581-8593
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 8581-8593
-
-
Hogenesch, J.B.1
Chan, W.K.2
Jackiw, V.H.3
Brown, R.C.4
Gu, Y.-Z.5
Pray-Grant, M.6
Perdew, G.H.7
Bradfield, C.A.8
-
25
-
-
0031834838
-
Role of the PAS domain in regulation of dimerization and DNA binding specificity of the dioxin receptor
-
Pongratz I., Antonsson C., Whitelaw M.L., and Poellinger L. Role of the PAS domain in regulation of dimerization and DNA binding specificity of the dioxin receptor. Mol. Cell. Biol. 18 (1998) 4079-4088
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 4079-4088
-
-
Pongratz, I.1
Antonsson, C.2
Whitelaw, M.L.3
Poellinger, L.4
-
26
-
-
0026725943
-
Cloning of the Ah-receptor cDNA reveals a distinctive ligand-activated transcription factor
-
Burbach K.M., Pol A., and Bradfield C.A. Cloning of the Ah-receptor cDNA reveals a distinctive ligand-activated transcription factor. Proc. Natl. Acad. Sci. U. S. A. 89 (1992) 8185-8189
-
(1992)
Proc. Natl. Acad. Sci. U. S. A.
, vol.89
, pp. 8185-8189
-
-
Burbach, K.M.1
Pol, A.2
Bradfield, C.A.3
-
27
-
-
0026749010
-
cDNA cloning and structure of mouse putative Ah receptor
-
Ema M., Sogawa K., Watanabe N., Chujoh Y., Matsushita N., Gotoh O., Funae Y., and Fujii-Kuriyama Y. cDNA cloning and structure of mouse putative Ah receptor. Biochem. Biophys. Res. Commun. 184 (1992) 246-253
-
(1992)
Biochem. Biophys. Res. Commun.
, vol.184
, pp. 246-253
-
-
Ema, M.1
Sogawa, K.2
Watanabe, N.3
Chujoh, Y.4
Matsushita, N.5
Gotoh, O.6
Funae, Y.7
Fujii-Kuriyama, Y.8
-
28
-
-
0025906014
-
Cloning of a factor required for activity of the Ah (Dioxin) receptor
-
Hoffman E.C., Reyes H., Chu F., Sander F., Conley L.H., Brooks B.A., and Hankinson O. Cloning of a factor required for activity of the Ah (Dioxin) receptor. Science 252 (1991) 954
-
(1991)
Science
, vol.252
, pp. 954
-
-
Hoffman, E.C.1
Reyes, H.2
Chu, F.3
Sander, F.4
Conley, L.H.5
Brooks, B.A.6
Hankinson, O.7
-
29
-
-
0026625037
-
Identification of the Ah receptor nuclear translocator protein (Arnt) as a component of the DNA binding form of the Ah receptor
-
Reyes H., Reisz-Porszasz S., and Hankinson O. Identification of the Ah receptor nuclear translocator protein (Arnt) as a component of the DNA binding form of the Ah receptor. Science 256 (1992) 1193-1195
-
(1992)
Science
, vol.256
, pp. 1193-1195
-
-
Reyes, H.1
Reisz-Porszasz, S.2
Hankinson, O.3
-
30
-
-
0026068698
-
Role of the ligand in intracellular receptor function: receptor affinity determines activation in vitro of the latent dioxin receptor to a DNA-binding form
-
Cuthill S., Wilhelmsson A., and Poellinger L. Role of the ligand in intracellular receptor function: receptor affinity determines activation in vitro of the latent dioxin receptor to a DNA-binding form. Mol. Cell. Biol. 11 (1991) 401-411
-
(1991)
Mol. Cell. Biol.
, vol.11
, pp. 401-411
-
-
Cuthill, S.1
Wilhelmsson, A.2
Poellinger, L.3
-
31
-
-
0027403810
-
Ligand-dependent recruitment of the arnt coregulator determines DNA recognition of the dioxin receptor
-
Whitelaw M., Pongratz I., Wilhelmsson A., Gustafsson J.-A., and Poellinger L. Ligand-dependent recruitment of the arnt coregulator determines DNA recognition of the dioxin receptor. Mol. Cell. Biol. 13 (1993) 2504-2514
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 2504-2514
-
-
Whitelaw, M.1
Pongratz, I.2
Wilhelmsson, A.3
Gustafsson, J.-A.4
Poellinger, L.5
-
32
-
-
0030888748
-
Aryl hydrocarbon receptor-mediated signal transduction
-
Rowlands J.C., and Gustafsson J.-Å. Aryl hydrocarbon receptor-mediated signal transduction. Crit. Rev. Toxicol. 27 (1997) 109-134
-
(1997)
Crit. Rev. Toxicol.
, vol.27
, pp. 109-134
-
-
Rowlands, J.C.1
Gustafsson, J.-Å.2
-
33
-
-
0028908504
-
Orientation of the heterodimeric Aryl hydrocarbon (Dioxin) receptor complex on its asymmetric DNA recognition sequence
-
Bacsi S.G., Reisz-Porszasz S., and Hankinson O. Orientation of the heterodimeric Aryl hydrocarbon (Dioxin) receptor complex on its asymmetric DNA recognition sequence. Mol. Pharmacol. 47 (1995) 432-438
-
(1995)
Mol. Pharmacol.
, vol.47
, pp. 432-438
-
-
Bacsi, S.G.1
Reisz-Porszasz, S.2
Hankinson, O.3
-
34
-
-
16644363476
-
HIF-1 and p53: communication of transcription factors under hypoxia
-
Schmid T., Zhou J., and Brüne B. HIF-1 and p53: communication of transcription factors under hypoxia. J. Cell. Mol. Med. 8 (2004) 423-431
-
(2004)
J. Cell. Mol. Med.
, vol.8
, pp. 423-431
-
-
Schmid, T.1
Zhou, J.2
Brüne, B.3
-
35
-
-
10644234769
-
The role of hypoxia-induced factors in tumor progression
-
Vaupel P. The role of hypoxia-induced factors in tumor progression. Oncologist 9 (2004) 10-17
-
(2004)
Oncologist
, vol.9
, pp. 10-17
-
-
Vaupel, P.1
-
36
-
-
3042574823
-
Altered DNA binding specificity of Arnt by selection of partner bHLH-PAS proteins
-
Kinoshita K., Kikuchi Y., Sasakura Y., Suzuki M., Fujii-Kuriyama Y., and Sogawa K. Altered DNA binding specificity of Arnt by selection of partner bHLH-PAS proteins. Nucleic Acids Res. 32 (2004) 3169-3179
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 3169-3179
-
-
Kinoshita, K.1
Kikuchi, Y.2
Sasakura, Y.3
Suzuki, M.4
Fujii-Kuriyama, Y.5
Sogawa, K.6
-
37
-
-
0033178263
-
Specificity of DNA binding of the c-Myc/Max and ARNT/ARNT dimers at the CACGTG recognition site
-
Swanson H.I., and Yang J.-H. Specificity of DNA binding of the c-Myc/Max and ARNT/ARNT dimers at the CACGTG recognition site. Nucleic Acids Res. 27 (1999) 3205-3212
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3205-3212
-
-
Swanson, H.I.1
Yang, J.-H.2
-
38
-
-
0024365536
-
Defining the sequence specificity of DNA-binding proteins by selecting binding sites from random-sequence oligonucleotides: analysis of yeast GCN4 protein
-
Oliphant A.R., Brandl C.J., and Struhl K. Defining the sequence specificity of DNA-binding proteins by selecting binding sites from random-sequence oligonucleotides: analysis of yeast GCN4 protein. Mol. Cell. Biol. 9 (1989) 2944-2949
-
(1989)
Mol. Cell. Biol.
, vol.9
, pp. 2944-2949
-
-
Oliphant, A.R.1
Brandl, C.J.2
Struhl, K.3
-
39
-
-
0034732899
-
GCN4 binds with high affinity to DNA sequences containing a single consensus half-site
-
Hollenbeck J.J., and Oakley M.G. GCN4 binds with high affinity to DNA sequences containing a single consensus half-site. Biochemistry 39 (2000) 6380-6389
-
(2000)
Biochemistry
, vol.39
, pp. 6380-6389
-
-
Hollenbeck, J.J.1
Oakley, M.G.2
-
40
-
-
0036145552
-
Rapid screening for improved solubility to small human proteins produced as fusion proteins in Escherichia coli
-
Hammarström M., Hellgren N., Van den Berg S., Berglund H., and Härd T. Rapid screening for improved solubility to small human proteins produced as fusion proteins in Escherichia coli. Protein Sci. 11 (2002) 313-321
-
(2002)
Protein Sci.
, vol.11
, pp. 313-321
-
-
Hammarström, M.1
Hellgren, N.2
Van den Berg, S.3
Berglund, H.4
Härd, T.5
-
41
-
-
0036412071
-
Specificity of protein-DNA recognition revealed by structure-based potentials: symmetric/asymmetric and cognate/non-cognate binding
-
Selvaraj S., Kono H., and Sarai A. Specificity of protein-DNA recognition revealed by structure-based potentials: symmetric/asymmetric and cognate/non-cognate binding. J. Mol. Biol. 322 (2002) 907-915
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 907-915
-
-
Selvaraj, S.1
Kono, H.2
Sarai, A.3
-
42
-
-
0036713091
-
Definition and prediction of the full range of transcription factor binding sites-the hepatocyte nuclear factor 1 dimeric site
-
Locker J., Ghosh D., Luc P.-V., and Zheng J. Definition and prediction of the full range of transcription factor binding sites-the hepatocyte nuclear factor 1 dimeric site. Nucleic Acids Res. 30 (2002) 3809-3817
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3809-3817
-
-
Locker, J.1
Ghosh, D.2
Luc, P.-V.3
Zheng, J.4
-
43
-
-
0025780755
-
Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA
-
Luisi B.F., Xu W.X., Otwinowski Z., Freedman L.P., Yamamoto K.R., and Sigler P.B. Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA. Nature 352 (1991) 497-505
-
(1991)
Nature
, vol.352
, pp. 497-505
-
-
Luisi, B.F.1
Xu, W.X.2
Otwinowski, Z.3
Freedman, L.P.4
Yamamoto, K.R.5
Sigler, P.B.6
-
44
-
-
21344432541
-
The 5′-AT-rich half-site of Maf recognition element: a functional target for bZIP transcription factor Maf
-
Yoshida T., Ohkumo T., Ishibashi S., and Yasuda K. The 5′-AT-rich half-site of Maf recognition element: a functional target for bZIP transcription factor Maf. Nucleic Acids Res. 33 (2005) 3465-3478
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 3465-3478
-
-
Yoshida, T.1
Ohkumo, T.2
Ishibashi, S.3
Yasuda, K.4
|