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Volumn 1764, Issue 7, 2006, Pages 1268-1276

Aspartic acid 214 in Citrobacter freundii tyrosine phenol-lyase ensures sufficient C-H-acidity of the external aldimine intermediate and proper orientation of the cofactor at the active site

Author keywords

Asp214; Citrobacter freundii tyrosine phenol lyase; Ionic form of the internal aldimine; Mutant enzymes; Rate limiting stage; Steady state kinetic

Indexed keywords

AMINO ACID; ASPARTIC ACID; BACTERIAL ENZYME; DEUTERIUM; IMINE; PHENYLALANINE; PROTON; QUINONE DERIVATIVE; TYROSINE PHENOL LYASE;

EID: 33746093225     PISSN: 15709639     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbapap.2006.05.001     Document Type: Article
Times cited : (12)

References (40)
  • 2
    • 0026664513 scopus 로고
    • Role of Asp222 in the catalytic mechanism of Escherichia coli aspartate aminotransferase: the amino acid residue which enhances the function of the enzyme-bound coenzyme pyridoxal 5′-phosphate
    • Yano T., Kuramutsu S., Tanase S., Morino Y., and Kagamiyama H. Role of Asp222 in the catalytic mechanism of Escherichia coli aspartate aminotransferase: the amino acid residue which enhances the function of the enzyme-bound coenzyme pyridoxal 5′-phosphate. Biochemistry 31 (1992) 5878-5887
    • (1992) Biochemistry , vol.31 , pp. 5878-5887
    • Yano, T.1    Kuramutsu, S.2    Tanase, S.3    Morino, Y.4    Kagamiyama, H.5
  • 3
    • 0032502324 scopus 로고    scopus 로고
    • Aspartate-279 in aminolevulinate synthase affects enzyme catalysis through enhancing the function of the pyridoxal 5′-phosphate cofactor
    • Gong J., Hunter G.A., and Ferreira G.C. Aspartate-279 in aminolevulinate synthase affects enzyme catalysis through enhancing the function of the pyridoxal 5′-phosphate cofactor. Biochemistry 37 (1998) 3509-3517
    • (1998) Biochemistry , vol.37 , pp. 3509-3517
    • Gong, J.1    Hunter, G.A.2    Ferreira, G.C.3
  • 4
    • 0029042171 scopus 로고
    • Acidic residues important for substrate binding and cofactor reactivity in eukaryotic ornithine decarboxylase identified by alanine scanning mutagenesis
    • Osterman A.L., Kinch L.N., Grishin N.V., and Phillips M.A. Acidic residues important for substrate binding and cofactor reactivity in eukaryotic ornithine decarboxylase identified by alanine scanning mutagenesis. J. Biol. Chem. 279 (1995) 11797-117802
    • (1995) J. Biol. Chem. , vol.279 , pp. 11797-117802
    • Osterman, A.L.1    Kinch, L.N.2    Grishin, N.V.3    Phillips, M.A.4
  • 5
    • 0842304745 scopus 로고    scopus 로고
    • Three-dimensional structure of kynureninase from Pseudomonas fluorescens
    • Momany C., Levdikov V., Blagova E., Lima S., and Phillips R.S. Three-dimensional structure of kynureninase from Pseudomonas fluorescens. Biochemistry 43 (2004) 1193-1203
    • (2004) Biochemistry , vol.43 , pp. 1193-1203
    • Momany, C.1    Levdikov, V.2    Blagova, E.3    Lima, S.4    Phillips, R.S.5
  • 6
    • 9744235147 scopus 로고    scopus 로고
    • Reaction specificity in pyridoxal phosphate enzymes
    • Toney M.D. Reaction specificity in pyridoxal phosphate enzymes. Arch. Biochem. Biophys. 433 (2005) 279-287
    • (2005) Arch. Biochem. Biophys. , vol.433 , pp. 279-287
    • Toney, M.D.1
  • 8
    • 0024608635 scopus 로고
    • Synthesis of l-tyrosine from phenol and S-(o-nitrophenyl)-l-cysteine catalyzed by tyrosine phenol-lyase
    • Phillips R.S., Ravichandran K., and Von Tersh R. Synthesis of l-tyrosine from phenol and S-(o-nitrophenyl)-l-cysteine catalyzed by tyrosine phenol-lyase. Enzyme Microb. Technol. 11 (1989) 80-83
    • (1989) Enzyme Microb. Technol. , vol.11 , pp. 80-83
    • Phillips, R.S.1    Ravichandran, K.2    Von Tersh, R.3
  • 9
    • 0025177271 scopus 로고
    • Oxygenation of fluorinated tyrosines by mushroom tyrosinase releases fluoride ion
    • Phillips R.S., Fletcher J., Von Tersh R., and Kirk K. Oxygenation of fluorinated tyrosines by mushroom tyrosinase releases fluoride ion. Arch. Biochem. Biophys. 276 (1990) 65-69
    • (1990) Arch. Biochem. Biophys. , vol.276 , pp. 65-69
    • Phillips, R.S.1    Fletcher, J.2    Von Tersh, R.3    Kirk, K.4
  • 11
    • 0023634094 scopus 로고
    • Production of single-stranded plasmid DNA
    • Viera J., and Messing J. Production of single-stranded plasmid DNA. Methods Enzymol. 153 (1987) 1-34
    • (1987) Methods Enzymol. , vol.153 , pp. 1-34
    • Viera, J.1    Messing, J.2
  • 12
    • 0022429789 scopus 로고
    • The rapid generation of oligonucleotide-directed mutations at high frequency using phosphorothioate-modified DNA
    • Taylor J.W., Ott J., and Eckstein F. The rapid generation of oligonucleotide-directed mutations at high frequency using phosphorothioate-modified DNA. Nucleic Acids Res. 13 (1985) 8765-8785
    • (1985) Nucleic Acids Res. , vol.13 , pp. 8765-8785
    • Taylor, J.W.1    Ott, J.2    Eckstein, F.3
  • 14
    • 85047694037 scopus 로고
    • Site-directed mutagenesis of His 343→Ala in Citrobacter freundii tyrosine phenol-lyase. Effects on the kinetic mechanism and rate-determining step
    • Chen H., Gollnick P., and Phillips R.S. Site-directed mutagenesis of His 343→Ala in Citrobacter freundii tyrosine phenol-lyase. Effects on the kinetic mechanism and rate-determining step. Eur. J. Biochem. 229 (1995) 540-549
    • (1995) Eur. J. Biochem. , vol.229 , pp. 540-549
    • Chen, H.1    Gollnick, P.2    Phillips, R.S.3
  • 15
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the heart of bacteriophage T4
    • Laemmli U.K. Cleavage of structural proteins during the assembly of the heart of bacteriophage T4. Nature 227 (1970) 680-685
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 17
    • 0014939377 scopus 로고
    • Tyrosine phenol-lyase: I. Purification, crystallization, and properties
    • Kumagai H., Yamada H., Matsiu K., Ohkishi H., and Ogata K. Tyrosine phenol-lyase: I. Purification, crystallization, and properties. J. Biol. Chem. 245 (1970) 1767-1777
    • (1970) J. Biol. Chem. , vol.245 , pp. 1767-1777
    • Kumagai, H.1    Yamada, H.2    Matsiu, K.3    Ohkishi, H.4    Ogata, K.5
  • 18
    • 0000865830 scopus 로고
    • Tryptophanase (Escherichia coli B)
    • Morino Y., and Snell E. Tryptophanase (Escherichia coli B). Methods Enzymol. 17A (1970) 439-446
    • (1970) Methods Enzymol. , vol.17 A , pp. 439-446
    • Morino, Y.1    Snell, E.2
  • 20
    • 0030887831 scopus 로고    scopus 로고
    • Role of Arg-277 in the binding of pyridoxal 5′-phosphate to Trypanosoma brucei ornitine decarboxylase
    • Osterman A.L., Brooks H.B., Rizo J., and Phillips M.A. Role of Arg-277 in the binding of pyridoxal 5′-phosphate to Trypanosoma brucei ornitine decarboxylase. Biochemistry 36 (1997) 4558-4567
    • (1997) Biochemistry , vol.36 , pp. 4558-4567
    • Osterman, A.L.1    Brooks, H.B.2    Rizo, J.3    Phillips, M.A.4
  • 21
    • 84969001783 scopus 로고
    • The attraction of proteins for small molecules and ions
    • Scatchard G. The attraction of proteins for small molecules and ions. J. Biol. Chem. 51 (1949) 660-672
    • (1949) J. Biol. Chem. , vol.51 , pp. 660-672
    • Scatchard, G.1
  • 22
    • 36849108026 scopus 로고
    • Band shapes of the electronic spectra of complex molecules
    • Siano D.B., and Metzler D.E. Band shapes of the electronic spectra of complex molecules. J. Chem. Phys. 51 (1969) 1856-1861
    • (1969) J. Chem. Phys. , vol.51 , pp. 1856-1861
    • Siano, D.B.1    Metzler, D.E.2
  • 23
    • 0015747532 scopus 로고
    • Spectra of 3-hydroxypyridines. Band-shape analysis and evaluation of tautomeric equilibria
    • Metzler D.E., Harris C.M., Johnson R.J., and Siano D.B. Spectra of 3-hydroxypyridines. Band-shape analysis and evaluation of tautomeric equilibria. Biochemistry 12 (1973) 5377-5392
    • (1973) Biochemistry , vol.12 , pp. 5377-5392
    • Metzler, D.E.1    Harris, C.M.2    Johnson, R.J.3    Siano, D.B.4
  • 24
    • 0023508496 scopus 로고
    • Quantitative description of absorption spectra of a pyridoxal phosphate-dependent enzyme using lognormal distribution curves
    • Metzler C.M., and Metzler D.E. Quantitative description of absorption spectra of a pyridoxal phosphate-dependent enzyme using lognormal distribution curves. Anal. Biochem. 166 (1987) 313-327
    • (1987) Anal. Biochem. , vol.166 , pp. 313-327
    • Metzler, C.M.1    Metzler, D.E.2
  • 26
    • 0016749447 scopus 로고
    • Determination of dissociation constants and specific rate constants of enzyme-substrate (or protein-ligand) interactions from rapid reaction kinetic data
    • Strickland S., Palmer G., and Massey V. Determination of dissociation constants and specific rate constants of enzyme-substrate (or protein-ligand) interactions from rapid reaction kinetic data. J. Biol. Chem. 250 (1975) 4048-4337
    • (1975) J. Biol. Chem. , vol.250 , pp. 4048-4337
    • Strickland, S.1    Palmer, G.2    Massey, V.3
  • 27
    • 0024381694 scopus 로고
    • The activity and reaction specificity of tyrosine phenol-lyase regulated by monovalent cations
    • Demidkina T.V., and Myagkikh I.V. The activity and reaction specificity of tyrosine phenol-lyase regulated by monovalent cations. Biochimie 71 (1989) 565-571
    • (1989) Biochimie , vol.71 , pp. 565-571
    • Demidkina, T.V.1    Myagkikh, I.V.2
  • 28
    • 0034713844 scopus 로고    scopus 로고
    • The role of glutamic acid-69 in the activation of Citrobacter freundii tyrosine phenol-lyase by monovalent cations
    • Sundararaju B., Chen H., Shilcutt S., and Phillips R.S. The role of glutamic acid-69 in the activation of Citrobacter freundii tyrosine phenol-lyase by monovalent cations. Biochemistry 39 (2000) 8546-8555
    • (2000) Biochemistry , vol.39 , pp. 8546-8555
    • Sundararaju, B.1    Chen, H.2    Shilcutt, S.3    Phillips, R.S.4
  • 29
    • 0034107869 scopus 로고    scopus 로고
    • Pyridoxal phosphate Schiff base in Citrobacter freindii tyrosine phenol-lyase: ionic and tatutomeric equilibria
    • Bazhulina N.P., Morozov Yu.V., Papisova A.I., and Demidkina T.V. Pyridoxal phosphate Schiff base in Citrobacter freindii tyrosine phenol-lyase: ionic and tatutomeric equilibria. Eur. J. Biochem. 267 (2000) 1830-1836
    • (2000) Eur. J. Biochem. , vol.267 , pp. 1830-1836
    • Bazhulina, N.P.1    Morozov, Yu.V.2    Papisova, A.I.3    Demidkina, T.V.4
  • 30
    • 0039359079 scopus 로고
    • Identity of subunits of tyrosine phenol-lyase from Citrobacter intermedius
    • Kazakov V.K., Myagkikh I.V., Tomina I.I., and Demidkina T.V. Identity of subunits of tyrosine phenol-lyase from Citrobacter intermedius. Biokhimia (Russian) 52 (1987) 1319-1323
    • (1987) Biokhimia (Russian) , vol.52 , pp. 1319-1323
    • Kazakov, V.K.1    Myagkikh, I.V.2    Tomina, I.I.3    Demidkina, T.V.4
  • 31
    • 0000797043 scopus 로고
    • Spectroscopic behaviours of pyridoxal 5′-phosphate amino acid aldimines, Tautomer and isomer equilibria
    • Bazhulina N.P., Bokovoi V.A., Morozov Yu.V., Fiodorova L.I., and Chekhov V.O. Spectroscopic behaviours of pyridoxal 5′-phosphate amino acid aldimines, Tautomer and isomer equilibria. Mol. Biol. (Russian) 25 (1991) 546-555
    • (1991) Mol. Biol. (Russian) , vol.25 , pp. 546-555
    • Bazhulina, N.P.1    Bokovoi, V.A.2    Morozov, Yu.V.3    Fiodorova, L.I.4    Chekhov, V.O.5
  • 34
    • 0033555932 scopus 로고    scopus 로고
    • Conversion of tyrosine phenol-lyase to dicarboxylic amino acid β-lyase, an enzyme not found in nature
    • Mouratou B., Kasper P., Gehring H., and Christen P. Conversion of tyrosine phenol-lyase to dicarboxylic amino acid β-lyase, an enzyme not found in nature. J. Biol. Chem. 274 (1999) 1320-1325
    • (1999) J. Biol. Chem. , vol.274 , pp. 1320-1325
    • Mouratou, B.1    Kasper, P.2    Gehring, H.3    Christen, P.4
  • 35
    • 0034018136 scopus 로고    scopus 로고
    • Citrobacter freundii tyrosine phenol lyase: role of Asn185 in modulating enzyme function through stabilization of the quinonoid intermediate
    • Barbolina M.V., Phillips R.S., Gollnick P.D., Faleev N.G., and Demidkina T.V. Citrobacter freundii tyrosine phenol lyase: role of Asn185 in modulating enzyme function through stabilization of the quinonoid intermediate. Protein Eng. 13 (2000) 207-215
    • (2000) Protein Eng. , vol.13 , pp. 207-215
    • Barbolina, M.V.1    Phillips, R.S.2    Gollnick, P.D.3    Faleev, N.G.4    Demidkina, T.V.5
  • 37
    • 0027954463 scopus 로고
    • Characterization of apparent negative co-operation induced in Escherichia coli aspartate aminotransferase by the replacement of Asp222 with alanine. Evidence for an extremely slow conformational change
    • Onuffer J.J., and Kirsch J.E. Characterization of apparent negative co-operation induced in Escherichia coli aspartate aminotransferase by the replacement of Asp222 with alanine. Evidence for an extremely slow conformational change. Protein Eng. 7 (1994) 413-424
    • (1994) Protein Eng. , vol.7 , pp. 413-424
    • Onuffer, J.J.1    Kirsch, J.E.2
  • 38
    • 0034826435 scopus 로고    scopus 로고
    • Mutation of residues in the coenzyme binding pocket of Dopa decarboxylase
    • Bertoldi M., Castellani S., and Borri Voltattorni C. Mutation of residues in the coenzyme binding pocket of Dopa decarboxylase. Eur. J. Biochem. 268 (2001) 2975-2981
    • (2001) Eur. J. Biochem. , vol.268 , pp. 2975-2981
    • Bertoldi, M.1    Castellani, S.2    Borri Voltattorni, C.3
  • 39
    • 0029080978 scopus 로고
    • Site-directed mutagenesis of tyrosine-71 to phenylalanine in Citrobacter freundii tyrosine phenol-lyase: evidence for dual roles of tyrosine-71 as a general acid catalyst in the reaction mechanism and in cofactor binding
    • Chen H., Demidkina T.V., and Phillips R.S. Site-directed mutagenesis of tyrosine-71 to phenylalanine in Citrobacter freundii tyrosine phenol-lyase: evidence for dual roles of tyrosine-71 as a general acid catalyst in the reaction mechanism and in cofactor binding. Biochemistry 34 (1995) 12276-12283
    • (1995) Biochemistry , vol.34 , pp. 12276-12283
    • Chen, H.1    Demidkina, T.V.2    Phillips, R.S.3
  • 40
    • 0030982177 scopus 로고    scopus 로고
    • The crystal structure of Citrobacter freundii tyrosine phenol-lyase complexed with 3-(4-hydroxyphenyl)propionic acid, together with site-directed mutagenesis and kinetic analysis, demonstrates that Arginine-381 is required for substrate specificity
    • Sundararju B., Antson A.A., Phillips R.S., Demidkina T.V., Barbolina M.V., Gollhick P., Dodson G.G., and Wilson K.S. The crystal structure of Citrobacter freundii tyrosine phenol-lyase complexed with 3-(4-hydroxyphenyl)propionic acid, together with site-directed mutagenesis and kinetic analysis, demonstrates that Arginine-381 is required for substrate specificity. Biochemistry 36 (1997) 6502-6510
    • (1997) Biochemistry , vol.36 , pp. 6502-6510
    • Sundararju, B.1    Antson, A.A.2    Phillips, R.S.3    Demidkina, T.V.4    Barbolina, M.V.5    Gollhick, P.6    Dodson, G.G.7    Wilson, K.S.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.