Whole genome phage display selects for proline-rich Boi polypeptides against Bem1p

Biotechnology Letters

Volumn 28, Issue 16, 2006, Pages 1233-1239

  Hertveldt, Kirsten ^a   Robben, Johan ^a,b   Volckaert, Guido ^a  

^a UNIVERSITY OF LEUVEN   (Belgium)

^b HASSELT UNIVERSITY   (Belgium)

Author keywords

Mass spectrometry; Phage display; Protein protein interaction; Proteomics; Saccharomyces cerevisiae; SH3 domain

Indexed keywords

PHAGE DISPLAY; PROTEIN-PROTEIN INTERACTION; PROTEOMICS; SACCHAROMYCES CEREVISIAE;

AMINO ACIDS; DNA; MASS SPECTROMETRY; POLYPEPTIDES; PROTEINS; YEAST;

GENES;

BEM1 PROTEIN, S CEREVISIAE; BOI1 PROTEIN, S CEREVISIAE; CDC24 PROTEIN, S CEREVISIAE; CELL CYCLE PROTEIN; GUANINE NUCLEOTIDE EXCHANGE FACTOR; PEPTIDE; PEPTIDE LIBRARY; PROLINE; SACCHAROMYCES CEREVISIAE PROTEIN; SIGNAL TRANSDUCING ADAPTOR PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; FUNGAL GENOME; GENOME; MASS SPECTROMETRY; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; PROTEIN TERTIARY STRUCTURE; PROTEOMICS; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY; SRC HOMOLOGY DOMAIN;

ADAPTOR PROTEINS, SIGNAL TRANSDUCING; AMINO ACID SEQUENCE; CELL CYCLE PROTEINS; GENOME, FUNGAL; GUANINE NUCLEOTIDE EXCHANGE FACTORS; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; PEPTIDE LIBRARY; PEPTIDES; PROLINE; PROTEIN STRUCTURE, TERTIARY; PROTEOMICS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; SRC HOMOLOGY DOMAINS;

SACCHAROMYCES CEREVISIAE;

EID: 33746077510     PISSN: 01415492     EISSN: 15736776     Source Type: Journal    
DOI: 10.1007/s10529-006-9082-y     Document Type: Article

References (17)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
2. Bender L, Lo HS, Lee H, Kokojan V, Peterson V, Bender A (1996) Associations among PH and SH3 domain-containing proteins and Rho-type GTPases in Yeast. J Cell Biol 133:879-894
3. Breikreutz BJ, Stark C, Tyers M (2003) The GRID: the general repository for interaction datasets. Genome Biol 4:R23
4. Butty AC, Pryciak PM, Huang LS, Herskowitz I, Peter M (1998) The role of Far1p in linking the heterotrimeric G protein to polarity establishment proteins during yeast mating. Science 282:1511-1516
5. Chant J (1999) Cell polarity in yeast. Annu Rev Cell Dev Biol 15:365-391
6. Drees BL, Sundin B, Brazeau E, Caviston JP, Chen GC, Guo W, Kozminski KG, Lau MW, Moskow JJ, Tong A, Schenkman LR, McKenzie A 3rd, Brennwald P, Longtine M, Bi E, Chan C, Novick P, Boone C, Pringle JR, Davis TN, Fields S, Drubin D (2001) A protein interaction map for cell polarity development. J Cell Biol 154:549-571
7. Dumont D, Noben J-P, Raus J, Stinissen P, Robben J (2004) Proteomic analysis of cerebrospinal fluid from multiple sclerosis patients. Proteomics 4:2117-2124
8. Fazi B, Cope MJ, Douangamath A, Ferracuti S, Schirwitz K, Zucconi A, Drubin DG, Wilmanns M, Cesareni G, Castagnoli L (2002) Unusual binding properties of the SH3 domain of the yeast actin-binding protein Abp1: structural and functional analysis. J Biol Chem 277:5290-5298
9. Fields S, Song O (1989) A novel genetic system to detect protein-protein interactions. Nature 340:245-246
10. Hertveldt K, Dechassa ML, Robben J, Volckaert G (2003) Identification of Ga180p-interacting proteins by Saccharomyces cerevisiae whole genome phage display. Gene 307:141-149
11. Ito T, Matsui Y, Ago T, Ota K, Sumimoto H (2001) Novel modular domain PB1 recognizes PC motif to mediate functional protein-protein interactions. EMBO J 20:3938-3946
12. Jacobsson K, Frykberg L (1995) Cloning of ligand-binding domains of bacterial receptors by phage display. Biotechniques 18:878-885
13. Lindmark H, Guss B (1999) SFS, a novel fibronectin-binding protein from Streptococcus equi, inhibits the binding between fibronectin and collagen. Infect Immun 67:2383-2388
14. Matsui Y, Matsui R, Akada R, Toh-e A (1996) Yeast src homology region 3 domain-binding proteins involved in bud formation. J Cell Biol 133:865-878
15. Park HO, Bi E, Pringle JR, Herskowitz I (1997) Two active states of the Ras-related Bud1/Rsr1 protein bind to different effectors to determine yeast cell polarity. Proc Natl Acad Sci USA 94:4463-4468
16. Parmley SF, Smith GP (1988) Antibody-selectable filamentous fd phage vectors: affinity purification of target genes. Gene 173:305-318
17. Rickles RJ, Botfield MC, Zhou XM, Henry PA, Brugge JS, Zoller MJ (1995) Phage display selection of ligand residues important for Src homology 3 domain binding specificity. Proc Natl Acad Sci USA 92:10909-10913