Effects of Pleistocene glaciations on population structure of North American chestnut-backed chickadees

Molecular Ecology

Volumn 15, Issue 9, 2006, Pages 2409-2419

  Burg, Theresa M ^a,b   Gaston, Anthony J ^c   Winker, Kevin ^d   Friesen, Vicki L ^a  

^a QUEEN S UNIVERSITY   (Canada)

^b CNRS   (France)

^c CARLETON UNIVERSITY   (Canada)

^d UNIVERSITY OF ALASKA MUSEUM   (United States)

Author keywords

Disjunct population; Historical biogeography; Microsatellite; Pleistocene glaciation; Poecile rufescens; Postglacial recolonization

Indexed keywords

MICROSATELLITE DNA;

ALLELE; ANIMAL; ARTICLE; GENETICS; HETEROZYGOTE; ICE COVER; MOLECULAR EVOLUTION; NORTH AMERICA; PHYSIOLOGY; POPULATION DYNAMICS; SONGBIRD; TREE;

ALLELES; ANIMALS; EVOLUTION, MOLECULAR; HETEROZYGOTE; ICE COVER; MICROSATELLITE REPEATS; NORTH AMERICA; POPULATION DYNAMICS; SONGBIRDS; TREES;

CASTANEA DENTATA; CONIUM; CONIUM MACULATUM; PARUS RUFESCENS;

EID: 33745881640     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2006.02957.x     Document Type: Article

References (60)

1. Anthony RG, Green GA, Forsman ED, Nelson SK (1996) Avian abundance in riparian zones of three forest types in the Cascade Mountains, Oregon. Wilson Bulletin, 108, 280-291.
2. Barnosky CW, Anderson PM, Bartlein PJ (1987) The northwestern U.S. during deglaciation; vegetational history and paleoclimatic implications. In: North American and Adjacent Oceans During the Last Deglaciation (eds Ruddiman WF, Wright HE Jr), pp. 289-321. Geological Society of America, Boulder, Colorado.
3. Belkhir K, Borsa P, Chikhi L, Raufaste N, Bonhomme F (2000) GENETIX 4.02, logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome et Populations, CNRS UPR 9060, Université Montpellier II, Montpellier, France.
4. Bowles JH (1909) Notes on Parus rufescens in western Washington. Condor, 11, 55-57.
5. Bensch S, Price T, Kohn J (1997) Isolation and characterization of microsatellite loci in a Phylloscopus warbler. Molecular Ecology, 6, 91-92.
6. Brennan LA, Morrison ML (1991) Long-term trends of chickadee populations in western North America. Condor, 93, 130-137.
7. Brunsfeld SJ, Sullivan J, Soltis DE, Soltis PS (2001) Comparative phylogeography of northwestern North America: a synthesis. In: Integrating Ecological and Evolutionary Processes in a Spatial Context (eds Silverton J, Antonovics J), pp. 319-339. Blackwell Science, Oxford.
8. Burg TM, Gaston AJ, Winker K, Friesen VL (2005) Rapid divergence and postglacial colonization in western North American Steller's jays (Cyanocitta stelleri). Molecular Ecology, 14, 3745-3755.
9. Carstens BC, Stevenson AL, Degenhardt JD, Sullivan J (2004) Testing nested phylogenetic and phylogeographic hypothesis in the Plethodon vandykei species group. Systematic Biology, 53, 781-792.
10. Carstens BC, Degenhardt JD, Stevenson AL, Sullivan J (2005) Accounting for coalescent stochasticity in testing phylogeographical structure in the Idaho giant salamander Dicamptodon aterrimus. Molecular Ecology, 14, 255-265.
11. Ciofi C, Beaumont MA, Swingland IR, Bruford MW (1999) Genetic divergence and units for conservation in the Komodo dragon Varanus komodoensis. Proceedings of the Royal Society of London. Series B, Biological Sciences, 266, 2269-2274.
12. Cornuet JM, Luikart G (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics, 144, 2001-2014.
13. Dahlsten DL, Brennan LA, McCallum DA, Gaunt SL (2002) Chestnut-backed chickadee (Poecile rufescens). In: The Birds of North America (eds Poole A, Gill F). The Birds of North America, Philadelphia, Pennsylvania.
14. Fisher RA (1954) Statistical Methods for Research Workers. Oliver and Boyd, Edinburgh.
15. Gaggiotti OE, Lange O, Rassmann K, Gliddon C (1999) A comparison of two indirect methods for estimating average levels of gene flow using microsatellite data. Molecular Ecology, 8, 1513-1520.
16. Gill FB, Mostrom AM, Mack AL (1993) Speciation in North American chickadees: I. Patterns of mtDNA genetic divergence. Evolution, 47, 195-212.
17. Glaubitz JC, El-Kassaby YA, Carlson JE (2000) Nuclear restriction fragment length polymorphism analysis of genetic diversity in western red cedar. Canadian Journal of Forestry Research, 30, 379-389.
18. Goudet J (2001) FSTAT. A program to estimate and test gene diversities and fixation indices (version 2.9.3). Available from http:// www.unil.ch/izea/softwares/fstat.html. Updated from Goudet (1995).
19. Goudet J, Raymond M, de Meeus T, Rousset F (1996) Testing differentiation in diploid populations. Genetics, 144, 1933-1940.
20. Green DM, Sharbel TF, Kearsley J, Kaiser H (1996) Postglacial range fluctuation, genetic subdivision and speciation in the western North American spotted frog complex, Rana pretiosa. Evolution, 50, 374-390.
21. Griffith SC, Stewart IRK, Dawson DA, Owens IP, Burke T (1999) Contrasting levels of extra-pair paternity in mainland and island populations of the house sparrow (Passer domesticus): is there an 'island effect'? Biological Journal of the Linnean Society, 68, 303-316.
22. Grinnell J (1904) The origin and distribution of the chestnut-backed chickadee. Auk, 21, 364-382.
23. Guo SW, Thompson EA (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics, 48, 361-372.
24. Hanotte O, Zanon C, Pugh A, Greig C, Dixon A, Burke T (1994) Isolation and characterization of microsatellite loci in a passerine bird: the reed bunting Emberiza schoeniclus. Molecular Ecology, 3, 529-530.
25. Hardy OJ, Vekemans X (2002) SPAGEDI: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Molecular Ecology Notes, 2, 618-620.
26. Hardy OJ, Charbonnel N, Freville H, Heuretz M (2003) Microsatellite allele sizes: a simple test to assess their significance on genetic differentiation. Genetics, 163, 1467-1482.
27. Hedrick PW (1999) Perspective: Highly variable loci and their interpretation in evolution and conservation. Evolution, 53, 313-318.
28. Hewitt GM (1996) Some genetic consequences of ice ages, and their role in divergence and speciation. Biological Journal of the Linnean Society, 58, 247-276.
29. Hewitt GM (2000) The genetic legacy of the Quaternary ice ages. Nature, 405, 907-913.
30. Hutchison DW, Templeton AR (1999) Correlation of pairwise genetic and geographic distance measures: inferring the relative influences of gene flow and drift on the distribution of genetic variability. Evolution, 53, 1898-1914.
31. Ibrahim KM, Nichols RA, Hewitt GM (1996) Spatial patterns of genetic variation generated by different forms of dispersal during range expansion. Heredity, 77, 282-291.
32. Johansen AD, Latta RG (2003) Mitochondrial haplotype distribution, seed dispersal and patterns of postglacial expansion of ponderosa pine. Molecular Ecology, 12, 293-298.
33. Jump AS, Woodward FI, Burke T (2003) Cirsium species show disparity in patterns of genetic variation at their range-edge, despite similar patterns of reproduction and isolation. New Phytologist, 160, 359-370.
34. Kass RE, Raftery AE (1995) Bayes factors. Journal of the American Statistical Association, 90, 773-795.
35. Kimura M, Weiss GH (1964) The stepping stone model of population structure and the decrease of genetic correlation with distance. Genetics, 49, 561-576.
36. Little EL (1971) Atlas of United States Trees. United States Department of Agriculture Misc. Publication 1146. Washington, DC.
37. Lundquist RW, Mariani JM (1991) Nesting habitat and abundance of snag-dependent birds in the Southern Washington Cascade Range. In: Wildlife and Vegetation of Unmanaged Douglas-fir Forests. General Technical Report PNW-GTR-285 (eds Ruggiero LF, Aubry KB, Carey AB, Huff MH), pp. 221-240. US Department of Agriculture, Forest Service, Portland, Oregon.
38. Manel S, Gaggiotti OE, Waples RS (2005) Assignment methods: matching biological questions with appropriate techniques. Trends in Ecology and Evolution, 20, 136-142.
39. Mann DH, Hamilton TD (1995) Late Pleistocene and Holocene paleoenvironments of the North Pacific coast. Quaternary Science Reviews, 14, 449-471.
40. Martinez JG, Soler JJ, Soler M, Møller AP, Burke T (1999) Comparative population structure and gene flow of a brood parasite, the great spotted cuckoo (Clamator glandarius), and its primary host, the magpie (Pica pica). Evolution, 53, 269-278.
41. Miller MP (1997) Tools for Population Genetic Analysis (TFPGA), version 1.3. Northern Arizona University, Flagstaff, Arizona.
42. Nielson M, Lohman K, Sullivan J (2001) Phylogeography of the tailed frog (Ascaphus truei): implications for the biogeography of the Pacific Northwest. Evolution, 55, 147-160.
43. Otter KA, Stewart IRK, McGregor PK, Terry AMR, Dabelsteen T, Burke T (2001) Extra-pair paternity among great tits Parus major following manipulation of male signals. Journal of Avian Biology, 32, 338-344.
44. Paetkau D, Waits LP, Clarkson PL, Craighead L, Strobeck C (1997) An empirical evaluation of genetic distance statistics using microsatellite data from bear (Ursidae) populations. Genetics, 147, 1943-1957.
45. Piry S, Luikart G, Cornuet J-M (1999) BOTTLENECK: a computer program for detecting reductions in the effective population size using allele frequency data. Journal of Heredity, 90, 502-503.
46. Price J, Droege S, Price A (1995) The Summer Atlas of North American Breeding Birds. Academic Press, San Diego, California.
47. Pritchard JK, Stephens M, Donnelly P (2000) Inference of popu lation structure using multilocus genotype data. Genetics, 155, 945-959.
48. Pruett CL, Winker K (2005) Northwestern song sparrow populations show genetic effects of sequential colonization. Molecular Ecology, 14, 1421-1434.
49. Raymond M, Rousset F (1995a) An exact test for population differentiation. Evolution, 49, 1280-1283.
50. Raymond M, Rousset F (1995b) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248-249.
51. Rice WR (1989) Analyzing tables of statistical tests. Evolution, 43, 223-225.
52. Richardson BA, Brunsfeld SJ, Klopfenstein NB (2002) DNA from bird-dispersed seed and wind-disseminated pollen provides insights into postglacial colonization and population genetic structure of whitebark pine (Pinus albicaulis). Molecular Ecology, 11, 215-227.
53. Ritland C, Pape T, Ritland K (2001) Genetic structure of yellow cedar (Chamaecyparis nootkatensis). Canadian Journal of Botany, 79, 822-828.
54. Root RB (1964) Ecological interactions of the chestnut-backed chickadee following a range expansion. Condor, 66, 229-238.
55. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
56. Soltis DE, Gitzendanner MA, Strenge DD, Soltis PS (1997) Chloroplast DNA intraspecific phylogeography of plants from the Pacific Northwest of North America. Plant Systematics and Evolution, 206, 353-373.
57. Taylor EB, Pollard S, Louie D (1999) Mitochondrial DNA variation in bull trout (Salvelinus confluentus) from northwestern North America: implications for zoogeography and conservation. Molecular Ecology, 8, 1155-1170.
58. Warner BG, Mathewes RW, Clague JJ (1982) Ice-free conditions on the Queen Charlotte Islands, British Columbia, at the height of the late Wisconsin glaciation. Science, 218, 675-677.
59. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
60. Wisely SM, Buskirk SW, Russell GA, Aubry KB, Zielinski WJ (2004) Genetic diversity and structure of the fisher (Martes pennanti) in a peninsular and peripheral metapopulations. Journal of Mammalogy, 85, 640-648.