-
1
-
-
0032578397
-
The common marmoset: A new world primate species with limited Mhc class II variability
-
USA
-
Antunes SG, de Groot NG, Brok H, Doxiadis G, Menezes AA, Otting N, Bontrop RE (1998) The common marmoset: a new world primate species with limited Mhc class II variability. Proc Natl Acad Sci USA 95:11745-11750
-
(1998)
Proc Natl Acad Sci
, vol.95
, pp. 11745-11750
-
-
Antunes, S.G.1
De Groot, N.G.2
Brok, H.3
Doxiadis, G.4
Menezes, A.A.5
Otting, N.6
Bontrop, R.E.7
-
2
-
-
0032924380
-
Phylogenetic history of hominoid DRB loci and alleles inferred from intron sequences
-
Bergstrom TF, Erlandsson R, Engkvist H, Josefsson A, Erlich HA, Gyllensten U (1999) Phylogenetic history of hominoid DRB loci and alleles inferred from intron sequences. Immunol Rev 167:351-365
-
(1999)
Immunol Rev
, vol.167
, pp. 351-365
-
-
Bergstrom, T.F.1
Erlandsson, R.2
Engkvist, H.3
Josefsson, A.4
Erlich, H.A.5
Gyllensten, U.6
-
3
-
-
0000041317
-
The owl monkey as a model for malaria
-
Baer JF, Weller RE, Kakoma I (eds) Academic, New York
-
Collins WE (1994) The owl monkey as a model for malaria. In: Baer JF, Weller RE, Kakoma I (eds) Aotus: the owl monkey. Academic, New York, pp 245-258
-
(1994)
Aotus: The Owl Monkey
, pp. 245-258
-
-
Collins, W.E.1
-
4
-
-
0000228203
-
A model of evolutionary change in proteins
-
Dayhoff M (ed) National Biomedical Research Foundation, Washington, DC
-
Dayhoff M, Schwartz R, Orcutt B (1978) A model of evolutionary change in proteins. In: Dayhoff M (ed) Atlas of protein sequence and structure, vol. 5. National Biomedical Research Foundation, Washington, DC, pp 345-352
-
(1978)
Atlas of Protein Sequence and Structure
, vol.5
, pp. 345-352
-
-
Dayhoff, M.1
Schwartz, R.2
Orcutt, B.3
-
5
-
-
0026063965
-
Branching pattern in the evolutionary tree for human mitochondrial DNA
-
USA
-
Di Rienzo A, Wilson AC (1991) Branching pattern in the evolutionary tree for human mitochondrial DNA. Proc Natl Acad Sci USA 88:1597-1601
-
(1991)
Proc Natl Acad Sci
, vol.88
, pp. 1597-1601
-
-
Di Rienzo, A.1
Wilson, A.C.2
-
6
-
-
0034654301
-
Unprecedented polymorphism of Mhc-DRB region configurations in rhesus macaques
-
Doxiadis GG, Otting N, de Groot NG, Noort R, Bontrop RE (2000) Unprecedented polymorphism of Mhc-DRB region configurations in rhesus macaques. J Immunol 164:3193-3199
-
(2000)
J Immunol
, vol.164
, pp. 3193-3199
-
-
Doxiadis, G.G.1
Otting, N.2
De Groot, N.G.3
Noort, R.4
Bontrop, R.E.5
-
7
-
-
0035661267
-
Differential evolutionary MHC class II strategies in humans and rhesus macaques: Relevance for biomedical studies
-
Doxiadis GG, Otting N, de Groot NG, Bontrop RE (2001) Differential evolutionary MHC class II strategies in humans and rhesus macaques: relevance for biomedical studies. Immunol Rev 183:76-85
-
(2001)
Immunol Rev
, vol.183
, pp. 76-85
-
-
Doxiadis, G.G.1
Otting, N.2
De Groot, N.G.3
Bontrop, R.E.4
-
8
-
-
0031851808
-
Evolution and ecology of MHC molecules: From genomics to sexual selection
-
Edwards S, Hedirck P (1998) Evolution and ecology of MHC molecules: from genomics to sexual selection. TREE 13(8)305-311
-
(1998)
TREE
, vol.13
, Issue.8
, pp. 305-311
-
-
Edwards, S.1
Hedirck, P.2
-
9
-
-
0034045573
-
Mhc class II B gene evolution in East African cichlid fishes
-
Figueroa F, Mayer WE, Sultmann H, O'hUigin C, Tichy H, Satta Y, Takezaki N, Takahata N, Klein J (2000) Mhc class II B gene evolution in East African cichlid fishes. Immunogenetics 51:556-575
-
(2000)
Immunogenetics
, vol.51
, pp. 556-575
-
-
Figueroa, F.1
Mayer, W.E.2
Sultmann, H.3
O'hUigin, C.4
Tichy, H.5
Satta, Y.6
Takezaki, N.7
Takahata, N.8
Klein, J.9
-
10
-
-
0028147021
-
Manipulating blood T cells and B cells from squirrel monkeys: Some technical considerations
-
Garraud O, Perraut R, Gysin J, Behr C, Dubois P, Bonnemains B, Jouin H, Michel JC, Pereira da Silva L (1994) Manipulating blood T cells and B cells from squirrel monkeys: some technical considerations. J Immunol Methods 173:165-173
-
(1994)
J Immunol Methods
, vol.173
, pp. 165-173
-
-
Garraud, O.1
Perraut, R.2
Gysin, J.3
Behr, C.4
Dubois, P.5
Bonnemains, B.6
Jouin, H.7
Michel, J.C.8
Pereira Da Silva, L.9
-
11
-
-
0036381759
-
Mhc-DRB genes evolution in lemurs
-
Go Y, Satta Y, Kawamoto Y, Rakotoarisoa G, Randrianjafy A, Koyama N, Hirai H (2002) Mhc-DRB genes evolution in lemurs. Immunogenetics 54:403-417
-
(2002)
Immunogenetics
, vol.54
, pp. 403-417
-
-
Go, Y.1
Satta, Y.2
Kawamoto, Y.3
Rakotoarisoa, G.4
Randrianjafy, A.5
Koyama, N.6
Hirai, H.7
-
12
-
-
0015790398
-
Contribution of the free energy of mixing of hydrophobic side chains to the stability of the tertiary structure of proteins
-
Goldsack DE, Chalifoux RC (1973) Contribution of the free energy of mixing of hydrophobic side chains to the stability of the tertiary structure of proteins. J Theor Biol 39:645-651
-
(1973)
J Theor Biol
, vol.39
, pp. 645-651
-
-
Goldsack, D.E.1
Chalifoux, R.C.2
-
13
-
-
0028200955
-
The cotton-top tamarin revisited: Mhc class I polymorphism of wild tamarins, and polymorphism and allele diversity of the class II DQA1, DQB1, and DRB loci
-
Gyllensten U, Bergstrom T, Josefsson A, Sundvall M, Savage A, Blumer ES, Giraldo LH, Soto LH, Watkins DI (1994) The cotton-top tamarin revisited: Mhc class I polymorphism of wild tamarins, and polymorphism and allele diversity of the class II DQA1, DQB1, and DRB loci. Immunogenetics 40:167-176
-
(1994)
Immunogenetics
, vol.40
, pp. 167-176
-
-
Gyllensten, U.1
Bergstrom, T.2
Josefsson, A.3
Sundvall, M.4
Savage, A.5
Blumer, E.S.6
Giraldo, L.H.7
Soto, L.H.8
Watkins, D.I.9
-
15
-
-
12044253190
-
An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
-
Hillis DM (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol 42:182-192
-
(1993)
Syst Biol
, vol.42
, pp. 182-192
-
-
Hillis, D.M.1
-
16
-
-
0032426345
-
Natural selection at major histocompatibility complex loci of vertebrates
-
Hughes AL, Yeager M (1998) Natural selection at major histocompatibility complex loci of vertebrates. Annu Rev Genet 32:415-35
-
(1998)
Annu Rev Genet
, vol.32
, pp. 415-435
-
-
Hughes, A.L.1
Yeager, M.2
-
17
-
-
0018115846
-
The conformation of amino acid side chains in proteins
-
Janin J, Wodak S, Levitt M, Maigret B (1978) The conformation of amino acid side chains in proteins. J Mol Biol 125:357-386
-
(1978)
J Mol Biol
, vol.125
, pp. 357-386
-
-
Janin, J.1
Wodak, S.2
Levitt, M.3
Maigret, B.4
-
18
-
-
0000732090
-
Evolution of protein molecules
-
Munro HN (ed) Academic, New York
-
Jukes TH (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism. Academic, New York, pp 21-132
-
(1969)
Mammalian Protein Metabolism
, pp. 21-132
-
-
Jukes, T.H.1
-
19
-
-
0021331212
-
The class II molecules of the human and murine major histocompatibility complex
-
Kaufman JF, Auffray C, Korman AJ, Shackelford DA, Strominger J (1984) The class II molecules of the human and murine major histocompatibility complex. Cell 36:1-13
-
(1984)
Cell
, vol.36
, pp. 1-13
-
-
Kaufman, J.F.1
Auffray, C.2
Korman, A.J.3
Shackelford, D.A.4
Strominger, J.5
-
20
-
-
0026739894
-
Mhc-DRB diversity of the chimpanzee (Pan troglodytes)
-
Kenter M, Otting N, Anholts J, Jonker M, Schipper R, Bontrop RE (1992) Mhc-DRB diversity of the chimpanzee (Pan troglodytes). Immunogenetics 37:1-11
-
(1992)
Immunogenetics
, vol.37
, pp. 1-11
-
-
Kenter, M.1
Otting, N.2
Anholts, J.3
Jonker, M.4
Schipper, R.5
Bontrop, R.E.6
-
21
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
-
(1980)
J Mol Evol
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
22
-
-
0025276271
-
Nomenclature for the major histocompatibility complexes of different species: A proposal
-
Klein J, Bontrop RE, Dawkins RL, Erlich HA, Gyllensten UB, Heise ER, Jones PP, Parham P, Wakeland EK, Watkins DI (1990) Nomenclature for the major histocompatibility complexes of different species: a proposal. Immunogenetics 31:217-219
-
(1990)
Immunogenetics
, vol.31
, pp. 217-219
-
-
Klein, J.1
Bontrop, R.E.2
Dawkins, R.L.3
Erlich, H.A.4
Gyllensten, U.B.5
Heise, E.R.6
Jones, P.P.7
Parham, P.8
Wakeland, E.K.9
Watkins, D.I.10
-
24
-
-
0034028432
-
Alu elements support independent origin of prosimian, platyrrhine, and catarrhine Mhc-DRB genes
-
Kriener K, O'hUigin C, Klein J (2000a) Alu elements support independent origin of prosimian, platyrrhine, and catarrhine Mhc-DRB genes. Genome Res 5:634-643
-
(2000)
Genome Res
, vol.5
, pp. 634-643
-
-
Kriener, K.1
O'hUigin, C.2
Klein, J.3
-
25
-
-
0034066528
-
Convergent evolution of major histocompatibility complex molecules in humans and New World monkeys
-
Kriener K, O'hUigin C, Tichy H, Klein J (2000b) Convergent evolution of major histocompatibility complex molecules in humans and New World monkeys. Immunogenetics 51:169-178
-
(2000)
Immunogenetics
, vol.51
, pp. 169-178
-
-
Kriener, K.1
O'hUigin, C.2
Tichy, H.3
Klein, J.4
-
26
-
-
0035110484
-
Independent origin of functional MHC class II genes in humans and New World monkeys
-
Kriener K, O'hUigin C, Klein J (2001) Independent origin of functional MHC class II genes in humans and New World monkeys. Hum Immunol 62:1-14
-
(2001)
Hum Immunol
, vol.62
, pp. 1-14
-
-
Kriener, K.1
O'hUigin, C.2
Klein, J.3
-
27
-
-
0036139211
-
MEGA2: Molecular evolutionary genetics analysis software
-
Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245
-
(2001)
Bioinformatics
, vol.17
, pp. 1244-1245
-
-
Kumar, S.1
Tamura, K.2
Jakobsen, I.B.3
Nei, M.4
-
29
-
-
1542359005
-
Identification of New World monkey MHC-DRB alleles using PCR, DGGE and direct sequencing
-
Middleton S, Anzenberger G, Knapp L (2004) Identification of New World monkey MHC-DRB alleles using PCR, DGGE and direct sequencing. Immunogenetics 55:785-790
-
(2004)
Immunogenetics
, vol.55
, pp. 785-790
-
-
Middleton, S.1
Anzenberger, G.2
Knapp, L.3
-
30
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei M, Gojobori T (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3:418-426
-
(1986)
Mol Biol Evol
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
31
-
-
0034014510
-
Sequence and diversity of DRB genes of Aotusnancymaae, a primate model for human malaria parasites
-
Niño-Vasquez JJ, Vogel D, Rodriguez R, Moreno A, Patarroyo ME, Pluschke G, Daubenberger CA (2000) Sequence and diversity of DRB genes of Aotusnancymaae, a primate model for human malaria parasites. Immunogenetics 51:219-230
-
(2000)
Immunogenetics
, vol.51
, pp. 219-230
-
-
Niño-Vasquez, J.J.1
Vogel, D.2
Rodriguez, R.3
Moreno, A.4
Patarroyo, M.E.5
Pluschke, G.6
Daubenberger, C.A.7
-
32
-
-
0025949290
-
Role of diversifying selection and gene conversion in evolution of Major Histocompatibility Complex loci
-
USA
-
Ohta T (1991) Role of diversifying selection and gene conversion in evolution of Major Histocompatibility Complex loci. Proc Natl Acad Sci USA 15:6716-6720
-
(1991)
Proc Natl Acad Sci
, vol.15
, pp. 6716-6720
-
-
Ohta, T.1
-
33
-
-
0028987608
-
Quantifying the degree of convergence in primate Mhc-DRB genes
-
O'hUigin C (1995) Quantifying the degree of convergence in primate Mhc-DRB genes. Immunol Rev 143:123-140
-
(1995)
Immunol Rev
, vol.143
, pp. 123-140
-
-
O'hUigin, C.1
-
34
-
-
0033925735
-
Allele diversity of Mhc-DRB alleles in rhesus macaques
-
Otting N, de Groot NG, Noort MC, Doxiadis GG, Bontrop RE (2000) Allele diversity of Mhc-DRB alleles in rhesus macaques. Tissue Antigens 56:58-68
-
(2000)
Tissue Antigens
, vol.56
, pp. 58-68
-
-
Otting, N.1
De Groot, N.G.2
Noort, M.C.3
Doxiadis, G.G.4
Bontrop, R.E.5
-
35
-
-
0242380630
-
A highly infective Plasmodium vivax strain adapted to Aotus monkeys: Quantitative haematological and molecular determinations useful for P. vivax malaria vaccine development
-
Pico de Coaña Y, Rodriguez J, Guerrero E, Barrero C, Rodriguez R, Mendoza M, Patarroyo MA (2003) A highly infective Plasmodium vivax strain adapted to Aotus monkeys: quantitative haematological and molecular determinations useful for P. vivax malaria vaccine development. Vaccine 21:3930-3937
-
(2003)
Vaccine
, vol.21
, pp. 3930-3937
-
-
Pico De Coaña, Y.1
Rodriguez, J.2
Guerrero, E.3
Barrero, C.4
Rodriguez, R.5
Mendoza, M.6
Patarroyo, M.A.7
-
36
-
-
0025010601
-
Studies in owl monkeys leading to the development of a synthetic vaccine against the asexual blood stages of Plasmodium falciparum
-
Rodriguez R, Moreno A, Guzman F, Calvo M, Patarroyo ME (1990) Studies in owl monkeys leading to the development of a synthetic vaccine against the asexual blood stages of Plasmodium falciparum. Am J Trop Med Hyg 43:339-354
-
(1990)
Am J Trop Med Hyg
, vol.43
, pp. 339-354
-
-
Rodriguez, R.1
Moreno, A.2
Guzman, F.3
Calvo, M.4
Patarroyo, M.E.5
-
37
-
-
0031837482
-
Polymorphism of Mhc-DRB alleles in Cercopithecus aethiops (green monkey): Generation and functionality
-
Rosal-Sanchez M, Paz-Artal E, Moreno-Pelayo MA, Martinez-Quiles N, Martinez-Laso J, Martin-Villa JM, Arnaiz-Villena A (1998) Polymorphism of Mhc-DRB alleles in Cercopithecus aethiops (green monkey): generation and functionality. Tissue Antigens 51:541-548
-
(1998)
Tissue Antigens
, vol.51
, pp. 541-548
-
-
Rosal-Sanchez, M.1
Paz-Artal, E.2
Moreno-Pelayo, M.A.3
Martinez-Quiles, N.4
Martinez-Laso, J.5
Martin-Villa, J.M.6
Arnaiz-Villena, A.7
-
38
-
-
0027185401
-
Theoretical foundation of the minimum-evolution method of phylogenetic inference
-
Rzhetsky A, Nei M (1993) Theoretical foundation of the minimum-evolution method of phylogenetic inference. Mol Biol Evol 10:1073-1095
-
(1993)
Mol Biol Evol
, vol.10
, pp. 1073-1095
-
-
Rzhetsky, A.1
Nei, M.2
-
39
-
-
0030006766
-
Evolutionary relationship of HLA-DRB genes inferred from intron sequences
-
Satta Y, Mayer WE, Klein J (1996) Evolutionary relationship of HLA-DRB genes inferred from intron sequences. J Mol Evol 42:648-657
-
(1996)
J Mol Evol
, vol.42
, pp. 648-657
-
-
Satta, Y.1
Mayer, W.E.2
Klein, J.3
-
40
-
-
0024356449
-
Statistical tests for detecting gene conversion
-
Sawyer S (1989) Statistical tests for detecting gene conversion. Mol Biol Evol 6:526-538
-
(1989)
Mol Biol Evol
, vol.6
, pp. 526-538
-
-
Sawyer, S.1
-
42
-
-
0023161037
-
A fossil owl monkey from la Venta, Colombia
-
Setoguchi T, Rosenberger AL (1987) A fossil owl monkey from La Venta, Colombia. Nature 326(6114):692-694
-
(1987)
Nature
, vol.326
, Issue.6114
, pp. 692-694
-
-
Setoguchi, T.1
Rosenberger, A.L.2
-
43
-
-
0029965168
-
Bootstrap method of interior branch test for phylogenetic trees
-
Sitnikova T (1996) Bootstrap method of interior branch test for phylogenetic trees. Mol Biol Evol 13:605-611
-
(1996)
Mol Biol Evol
, vol.13
, pp. 605-611
-
-
Sitnikova, T.1
-
44
-
-
0028348369
-
Crystal structure of the human class II MHC protein HLA-DR1 complexed with an influenza virus peptide
-
Stern LJ, Brown JH, Jardetzky TS, Gorga JC, Urban RG, Strominger JL, Wiley DC (1994) Crystal structure of the human class II MHC protein HLA-DR1 complexed with an influenza virus peptide. Nature 368:215-221
-
(1994)
Nature
, vol.368
, pp. 215-221
-
-
Stern, L.J.1
Brown, J.H.2
Jardetzky, T.S.3
Gorga, J.C.4
Urban, R.G.5
Strominger, J.L.6
Wiley, D.C.7
-
45
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
47
-
-
0033809502
-
MHC (major histocompatibility complex)-DRB genes and polymorphisms in common marmoset
-
Wu MS, Tani K, Sugiyama H, Hibino H, Izawa K, Tanabe T, Nakazaki Y, Ishii H, Ohashi J, Hohjoh H, Iseki T, Tojo A, Nakamura Y, Tanioka Y, Tokunaga K, Asano S (2000) MHC (major histocompatibility complex)-DRB genes and polymorphisms in common marmoset. J Mol Evol 51:214-222
-
(2000)
J Mol Evol
, vol.51
, pp. 214-222
-
-
Wu, M.S.1
Tani, K.2
Sugiyama, H.3
Hibino, H.4
Izawa, K.5
Tanabe, T.6
Nakazaki, Y.7
Ishii, H.8
Ohashi, J.9
Hohjoh, H.10
Iseki, T.11
Tojo, A.12
Nakamura, Y.13
Tanioka, Y.14
Tokunaga, K.15
Asano, S.16
-
48
-
-
0032930360
-
Evolution of the mammalian MHC: Natural selection, recombination, and convergent evolution
-
Yeager M, Hughes AL (1999) Evolution of the mammalian MHC: natural selection, recombination, and convergent evolution. Immunol Rev 167:45-58
-
(1999)
Immunol Rev
, vol.167
, pp. 45-58
-
-
Yeager, M.1
Hughes, A.L.2
-
49
-
-
0025910407
-
Mhc-DRB genes of the pigtail macaque (Macaca nemestrina): Implications for the evolution of human DRB genes
-
Zhu ZF, Vincek V, Figueroa F, Schonbach C, Klein J (1991) Mhc-DRB genes of the pigtail macaque (Macaca nemestrina): implications for the evolution of human DRB genes. Mol Biol Evol 8:563-578
-
(1991)
Mol Biol Evol
, vol.8
, pp. 563-578
-
-
Zhu, Z.F.1
Vincek, V.2
Figueroa, F.3
Schonbach, C.4
Klein, J.5
|