-
1
-
-
0033613255
-
Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures
-
E. Alm and D. Baker. Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures. Proc. Nat. Acad. Sci. USA, 96:11305-11310, 1999.
-
(1999)
Proc. Nat. Acad. Sci. USA
, vol.96
, pp. 11305-11310
-
-
Alm, E.1
Baker, D.2
-
2
-
-
0036374326
-
Using motion planning to map protein folding landscapes and analyze folding kinetics of known native structures
-
N. M. Amato, K. A. Dill, and G. Song. Using motion planning to map protein folding landscapes and analyze folding kinetics of known native structures. In Proc. ACM Int. Conf. on Computational Biology (RECOMB), pages 2-11, 2002.
-
(2002)
Proc. ACM Int. Conf. on Computational Biology (RECOMB)
, pp. 2-11
-
-
Amato, N.M.1
Dill, K.A.2
Song, G.3
-
3
-
-
0036374348
-
Stochastic roadmap simulation: An efficient representation and algorithm for analyzing molecular motion
-
M. S. Apaydin, D. L. Brutlag, C. Guestrin, D. Hsu, and J.-C. Latombe. Stochastic roadmap simulation: An efficient representation and algorithm for analyzing molecular motion. In Proc. ACM Int. Conf. on Computational Biology (RECOMB), pages 12-21, 2002.
-
(2002)
Proc. ACM Int. Conf. on Computational Biology (RECOMB)
, pp. 12-21
-
-
Apaydin, M.S.1
Brutlag, D.L.2
Guestrin, C.3
Hsu, D.4
Latombe, J.-C.5
-
4
-
-
0028947257
-
Funnels, pathways, and the energy landscape of protein folding: A synthesis
-
J. D. Bryngelson, J. N. Onuchic, N. D. Socci, and P. G. Wolynes. Funnels, pathways, and the energy landscape of protein folding: A synthesis. Proteins: Structure, Function, and Genetics, 21(3):167-195, 1995.
-
(1995)
Proteins: Structure, Function, and Genetics
, vol.21
, Issue.3
, pp. 167-195
-
-
Bryngelson, J.D.1
Onuchic, J.N.2
Socci, N.D.3
Wolynes, P.G.4
-
5
-
-
33644893440
-
-
chapter 7. The MIT Press
-
H. Choset, K. M. Lynch, S. Hutchinson, G. Kantor, W. Burgard, L. E. Kavraki, and S. Thrun. Principles of Robot Motion: Theory, Algorithms, and Implementations, chapter 7. The MIT Press, 2005.
-
(2005)
Principles of Robot Motion: Theory, Algorithms, and Implementations
-
-
Choset, H.1
Lynch, K.M.2
Hutchinson, S.3
Kantor, G.4
Burgard, W.5
Kavraki, L.E.6
Thrun, S.7
-
6
-
-
0000239504
-
Master equation approach to protein folding and kinetic traps
-
M. Cieplak, M. Henkel, J. Karbowski, and J. R. Banavar. Master equation approach to protein folding and kinetic traps. Phys. Rev. Let., 80:3654, 1998.
-
(1998)
Phys. Rev. Let.
, vol.80
, pp. 3654
-
-
Cieplak, M.1
Henkel, M.2
Karbowski, J.3
Banavar, J.R.4
-
7
-
-
1842298212
-
From Levinthal to pathways to funnels
-
K. A. Dill and H. S. Chan. From Levinthal to pathways to funnels. Nature Structural Biology, 4(1):10-19, 1997.
-
(1997)
Nature Structural Biology
, vol.4
, Issue.1
, pp. 10-19
-
-
Dill, K.A.1
Chan, H.S.2
-
8
-
-
0001563395
-
On the transition coordinate for protein folding
-
R. Du, V. S. Pande, A. Y. Grosberg, T. Tanaka, and E. S. Shakhnovich. On the transition coordinate for protein folding. J. Chem. Phys., 108(1):334-350, 1998.
-
(1998)
J. Chem. Phys.
, vol.108
, Issue.1
, pp. 334-350
-
-
Du, R.1
Pande, V.S.2
Grosberg, A.Y.3
Tanaka, T.4
Shakhnovich, E.S.5
-
9
-
-
0034951912
-
Computational protein folding: From lattice to all-atom
-
Y. Duan and P. A. Kollman. Computational protein folding: From lattice to all-atom. IBM Systems J., 40(2):297-309, 2001.
-
(2001)
IBM Systems J.
, vol.40
, Issue.2
, pp. 297-309
-
-
Duan, Y.1
Kollman, P.A.2
-
11
-
-
0030623529
-
Rate of protein folding near the point of thermodynamic equilibrium between the coil and the most stable chain fold
-
A. V. Finkelstein and A. Y. Badretdinov. Rate of protein folding near the point of thermodynamic equilibrium between the coil and the most stable chain fold. Folding and Design, 2(2):115-121, 1997.
-
(1997)
Folding and Design
, vol.2
, Issue.2
, pp. 115-121
-
-
Finkelstein, A.V.1
Badretdinov, A.Y.2
-
13
-
-
0030580089
-
Structure-based calculation of the equilibrium folding pathway of proteins. Correlation with hydrogen exchange protection factors
-
V. J. Hilser and E. Freire. Structure-based calculation of the equilibrium folding pathway of proteins. Correlation with hydrogen exchange protection factors. J. Mol. Biol., 262(5):756-772, 1996.
-
(1996)
J. Mol. Biol.
, vol.262
, Issue.5
, pp. 756-772
-
-
Hilser, V.J.1
Freire, E.2
-
14
-
-
0028868995
-
The structure of the transition state for folding of chymotrypsin inhibitor 2 analysed by protein engineering methods: Evidence for a nucleation-condensation mechanism for protein folding
-
L. S. Itzhaki, D. E. Otzen, and A. R. Fersht. The structure of the transition state for folding of chymotrypsin inhibitor 2 analysed by protein engineering methods: evidence for a nucleation-condensation mechanism for protein folding. J. Mol. Biol., 254(2):260-288, 1995.
-
(1995)
J. Mol. Biol.
, vol.254
, Issue.2
, pp. 260-288
-
-
Itzhaki, L.S.1
Otzen, D.E.2
Fersht, A.R.3
-
15
-
-
0033613165
-
A simple model for calculating the kinetics of protein folding from three-dimensional structures
-
V. Muñoz and William A. Eaton. A simple model for calculating the kinetics of protein folding from three-dimensional structures. Proc. Nat. Acad. Sci. USA, 96:11311-11316, 1999.
-
(1999)
Proc. Nat. Acad. Sci. USA
, vol.96
, pp. 11311-11316
-
-
Muñoz, V.1
Eaton, W.A.2
-
18
-
-
3142707288
-
Using path sampling to build better Markovian state models: Predicting the foloding rate and mechanism of a tryptophan zipper beta hairpin
-
N. Singhal, C. D. Snow, and V. S. Pande. Using path sampling to build better Markovian state models: Predicting the foloding rate and mechanism of a tryptophan zipper beta hairpin. J. Chemical Physics, 121(1):415-425, 2004.
-
(2004)
J. Chemical Physics
, vol.121
, Issue.1
, pp. 415-425
-
-
Singhal, N.1
Snow, C.D.2
Pande, V.S.3
-
19
-
-
2442595997
-
Using motion planning to study RNA folding kinetics
-
X. Tang, B. Kirkpatrick, S. Thomas, G. Song, and N. M. Amato. Using motion planning to study RNA folding kinetics. In Proc. ACM Int. Conf. on Computational Biology (RECOMB), pages 252-261, 2004.
-
(2004)
Proc. ACM Int. Conf. on Computational Biology (RECOMB)
, pp. 252-261
-
-
Tang, X.1
Kirkpatrick, B.2
Thomas, S.3
Song, G.4
Amato, N.M.5
-
21
-
-
1342268048
-
Cooperativity in two-state protein folding kinetics
-
T. R. Weikl, M. Palassini, and K. A. Dill. Cooperativity in two-state protein folding kinetics. Protein Sci., 13(3):822-829, 2004.
-
(2004)
Protein Sci.
, vol.13
, Issue.3
, pp. 822-829
-
-
Weikl, T.R.1
Palassini, M.2
Dill, K.A.3
|