Mechanism of CcpA-mediated glucose repression of the resABCDE operon of Bacillus subtilis

Journal of Molecular Microbiology and Biotechnology

Volumn 11, Issue 1-2, 2006, Pages 104-110

  Choi, Soo Keun ^a   Saier Jr , Milton H ^a  

^a UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

Author keywords

Bacillus subtilis; Carbon control; CcpA; Electron transfer; Gene expression; ResDE

Indexed keywords

CYTOCHROME C; GLUCOSE; PHOSPHOTRANSFERASE; REGULATOR PROTEIN; RESD RESPONSE REGULATOR; RESE SENSOR KINASE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR CCPA; UNCLASSIFIED DRUG;

ARTICLE; BACILLUS SUBTILIS; BACTERIAL GENE; BACTERIAL GROWTH; BINDING SITE; COMPLEX FORMATION; CONTROLLED STUDY; ELECTRON TRANSPORT; GENE EXPRESSION; NONHUMAN; OPERON; PROMOTER REGION;

BACILLUS SUBTILIS; BACTERIAL PROTEINS; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; GLUCOSE; OPERON; POINT MUTATION; PROMOTER REGIONS (GENETICS); PROMOTER REGIONS, GENETIC; REPRESSOR PROTEINS; TRANSCRIPTION FACTORS;

BACILLUS SUBTILIS;

EID: 33745759452     PISSN: 14641801     EISSN: None     Source Type: Journal    
DOI: 10.1159/000092822     Document Type: Article

References (44)

1. Birkey SM, Liu W, Zhang X, Duggan MF, Hulett FM: Pho signal transduction network reveals direct transcriptional regulation of one two-component system by another two-component regulator: Bacillus subtilis PhoP directly regulates production of ResD. Mol Microbiol 1998;30:943-953.
2. Brokx SJ, Rothery RA, Zhang G, Ng DP, Weiner JH: Characterization of an Escherichia coli sulfite oxidase homologue reveals the role of a conserved active site cysteine in assembly and function. Biochemistry 2005;44:10339-10348.
3. Chauvaux S, Paulsen IT, Saier MH Jr: CcpB: a novel transcription factor implicated in catabolite repression in Bacillus subtilis. J Bacteriol 1998;180:491-497.
4. Choi S-K, Saier MH Jr: Regulation of sigL expression by the catabolite control protein, CcpA, involves a roadblock mechanism in Bacillus subtilis: potential connection between carbon and nitrogen metabolism. J Bacteriol 2005;187:6856-6861.
5. Choy HE, Adhya S: Control of gal transcription through DNA looping: inhibition of the initial transcribing complex. Proc Natl Acad Sci USA 1992;89:11264-11268.
6. Compan I, Touati D: Anaerobic activation of arcA transcription in Escherichia coli: roles of Fnr and ArcA. Mol Microbiol 1994;11:955-964.
7. Crow A, Acheson RM, Le Brun NE, Oubrie A: Structural basis of Redox-coupled protein substrate selection by the cytochrome c biosynthesis protein ResA. J Biol Chem 2004;279:23654-23660.
8. Crow A, Le Brun NE, Oubrie A: The role of ResA in type II cytochrome c maturation. Biochem Soc Trans 2005;33:149-151.
9. Erlendsson LS, Acheson RM, Hederstedt L, Le Brun NE: Bacillus subtilis ResA is a thiol-disulfide oxidoreductase involved in cytochrome c synthesis. J Biol Chem 2003;278:17852-17858.
10. Geanacopoulos M, Adhya S: Genetic analysis of GalR tetramerization in DNA looping during repressosome assembly. J Biol Chem 2002;277:33148-33152.
11. Geng H, Nakano S, Nakano MM: Transcriptional activation by Bacillus subtilis ResD: tandem binding to target elements and phosphorylation-dependent and -independent transcriptional activation. J Bacteriol 2004;186:2028-2037.
12. Glaser P, Danchin A, Kunst F, Zuber P, Nakano MM: Identification and isolation of a gene required for nitrate assimilation and anaerobic growth of Bacillus subtilis. J Bacteriol 1995;177:1112-1115.
13. Guerout-Fleury AM, Frandsen N, Stragier P: Plasmids for ectopic integration in Bacillus subtilis. Gene 1996;180:57-61.
14. Harwood CR, Cutting SM (eds): Molecular Biological Methods for Bacillus. New York, Wiley, 1990.
15. He B, Zalkin H: Repression of Escherichia coli purB is by a transcriptional roadblock mechanism. J Bacteriol 1992;174:7121-7127.
16. Homuth G, Rompf A, Schumann W, Jahn D: Transcriptional control of Bacillus subtilis hemN and hemZ. J Bacteriol 1999;181:5922-5929.
17. Iuchi S, Lin EC: Adaptation of Escherichia coli to redox environments by gene expression. Mol Microbiol 1993;9:9-15.
18. Lauraeus M, Haltia T, Saraste M, Wikstrom M: Bacillus subtilis expresses two kinds of haem-A-containing terminal oxidases. Eur J Biochem 1991;197:699-705.
19. Le Brun NE, Bengtsson J, Hederstedt L: Genes required for cytochrome c synthesis in Bacillus subtilis. Mol Microbiol 2000;36:638-650.
20. Liu X, Taber HW:. Catabolite regulation of the Bacillus subtilis ctaBCDEF gene cluster. J Bacteriol 1998;180:6154-6163.
21. Lorca GL, Chung YJ, Barabote RD, Weyler W, Schilling CH, Saier MH Jr: Catabolite repression/activation in Bacillus subtilis: Dependency on CcpA, HPr and HprK. J Bacteriol 2005;187:7826-7839.
22. Miller JH: Experiments in Molecular Genetics. Cold Spring Harbor, Cold Spring Harbor Laboratory, 1972.
23. Miwa Y, Nakata A, Ogiwara A, Yamamoto M, Fujita Y: Evaluation and characterization of catabolite-responsive elements (cre) of Bacillus subtilis. Nucleic Acids Res 2000;28:1206-1210.
24. Mosrin-Huaman C, Turnbough CL Jr, Rahmouni AR: Translocation of Escherichia coli RNA polymerase against a protein roadblock in vivo highlights a passive sliding mechanism for transcript elongation. Mol Microbiol 2004;51:1471-1481.
25. Nakano MM, Zheng G, Zuber P: Dual control of sbo-alb operon expression by the Spo0 and ResDE systems of signal transduction under anaerobic conditions in Bacillus subtilis. J Bacteriol 2000a;182:3274-3277.
26. Nakano MM, Zhu Y, Lacelle M, Zhang X, Hulett FM: Interaction of ResD with regulatory regions of anaerobically induced genes in Bacillus subtilis. Mol Microbiol 2000b;37:1198-1207.
27. Nakano MM, Zuber P, Glaser P, Danchin A, Hulett FM: Two-component regulatory proteins ResD-ResE are required for transcriptional activation of fnr upon oxygen limitation in Bacillus subtilis. J Bacteriol 1996;178:3796-3802.
28. Paul S, Zhang X, Hulett FM: Two ResD-controlled promoters regulate ctaA expression in Bacillus subtilis. J Bacteriol 2001;183:3237-3246.
29. + antiporter, influences expression of the phoPR operon and production of alkaline phosphatases. J Bacteriol 2001;183:2505-2515.
30. Santana M, Kunst F, Hullo MF, Rapoport G, Danchin A, Glaser P: Molecular cloning, sequencing, and physiological characterization of the qox operon from Bacillus subtilis encoding the aa3-600 quinol oxidase. J Biol Chem 1992;267:10225-10231.
31. Saraste M, Metso T, Nakari T, Jalli T, Lauraeus M, Van der Oost J: The Bacillus subtilis cytochrome-c oxidase. Variations on a conserved protein theme. Eur J Biochem 1991;195:517-525.
32. Schau M, Eldakak A, Hulett FM: Terminal oxidases are essential to bypass the requirement for ResD for full Pho induction in Bacillus subtilis. J Bacteriol 2004;186:8424-8432.
33. Schilling CH, Held L, Torre M, Saier MH Jr: GRASP-DNA: a web application to screen prokaryotic genomes for specific DNA-binding sites and repeat motifs. J Mol Microbiol Biotechnol 2000;2:495-500.
34. Semsey S, Geanacopoulos M, Lewis DE, Adhya S: Operator-bound GalR dimers close DNA loops by direct interaction: tetramerization and inducer binding. EMBO J 2002;21:4349-4356.
35. Spiro S, Guest JR: Adaptive responses to oxygen limitation in Escherichia coli. Trends Biochem Sci 1991;16:310-314.
36. Stewart V: Nitrate regulation of anaerobic respiratory gene expression in Escherichia coli. Mol Microbiol 1993;9:425-434.
37. Sun G, Birkey SM, Hulett FM: Three two-component signal-transduction systems interact for Pho regulation in Bacillus subtilis. Mol Microbiol 1996a;19:941-948.
38. Sun G, Sharkova E, Chesnut R, Birkey S, Duggan MF, Sorokin A, Pujic P, Ehrlich SD, Hulett FM: Regulators of aerobic and anaerobic respiration in Bacillus subtilis. J Bacteriol 1996b;178:1374-1385.
39. Svensson B, Hederstedt L: Bacillus subtilis CtaA is a heme-containing membrane protein involved in heme A biosynthesis. J Bacteriol 1994;176:6663-6671.
40. Virnik K, Lyubchenko YL, Karymov MA, Dahlgren P, Tolstorukov MY, Semsey S, Zhurkin VB, Adhya S: 'Antiparallel' DNA loop in gal repressosome visualized by atomic force microscopy. J Mol Biol 2003;334:53-63.
41. von Rozycki T, Yen M-R, Lende EE, Saier MH Jr: The YedZ family: Possible heme binding proteins that can be fused to transporters and electron carriers. J Mol Microbiol Biotechnol 2005;8:129-140.
42. Wacker I, Ludwig H, Reif I, Blencke HM, Detsch C, Stülke J: The regulatory link between carbon and nitrogen metabolism in Bacillus subtilis: regulation of the gltAB operon by the catabolite control protein CcpA. Microbiology 2003;149:3001-3009.
43. Yamane K, Kumano M, Kurita K: The 25 degrees-36 degrees region of the Bacillus subtilis chromosome: determination of the sequence of a 146 kb segment and identification of 113 genes. Microbiology 1996;142:3047-3056.
44. Yoshida K, Kobayashi K, Miwa Y, Kang CM, Matsunaga M, Yamaguchi H, Tojo S, Yamamoto M, Nishi R, Ogasawara N, Nakayama T, Fujita Y: Combined transcriptome and proteome analysis as a powerful approach to study genes under glucose repression in Bacillus subtilis. Nucleic Acids Res 2001;29:683-692.