Molecular identification of tropical tasar silkworm (Antheraea mylitta) ecoraces with RAPD and SCAR markers

Biochemical Genetics

Volumn 44, Issue 1-2, 2006, Pages 75-88

  Saha, Monalee ^a   Kundu, S C ^a  

^a INDIAN INSTITUTE OF TECHNOLOGY   (India)

Author keywords

Antheraea mylitta; Ecoraces; Random amplification of polymorphic DNA; Sequence characterized amplified regions; Tasar silkworm

Indexed keywords

DNA MARKER;

ALTITUDE; ANIMAL TISSUE; ANTHERAEA MYLITTA; ARTICLE; DNA POLYMORPHISM; DNA SEQUENCE; ECORACES; FEMALE; GENETIC IDENTIFICATION; HUMIDITY; MALE; MOLECULAR IDENTIFICATION; MORPHOLOGY; NONHUMAN; PHOTOPERIODICITY; PLANT; POLYMERASE CHAIN REACTION; RANDOM AMPLIFIED POLYMORPHIC DNA; SEQUENCE CHARACTERIZED AMPLIFIED REGION; SERICULTURE; SILKWORM;

ANIMALS; DNA PRIMERS; GENETIC MARKERS; MOTHS; NUCLEIC ACID HYBRIDIZATION; POLYMORPHISM, GENETIC; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE;

ANTHERAEA MYLITTA; BOMBYX MORI;

EID: 33745712351     PISSN: 00062928     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10528-006-9007-4     Document Type: Article

References (47)

1. Agusti, N., de Vicente, M. C., and Gabarra, R. (1999). Development of sequence amplified characterized region (SCAR) markers Helicoverpa armigera: A new polymerase chain reaction-based technique for predator gut analysis. Mol. Ecol. 8:1467-1474.
2. Akai, H. (2000). Cocoon filament characters and post-cocoon technology. Int. J. Wild Silkmoths Silk 5:255-259.
3. Andollina, A., De Cesare, A., Bertoni, G., Modelli, L., and Manfreda, G. (2004). Identification and genetic characterisation of orthopaedic Staphylococcus isolates collected in Italy by automated EcoRI ribotyping. FEMS Microbiol. Lett. 234:275-280.
4. Behura, S. K., Sahu, S. C., Rajamani, S., Devi, A., Mago, R., Nair, S., and Mohan, M. (1999). Differentiation of Asian rice gall midge, Orseolia oryiae (Wood-Mason), biotypes by sequence characterized amplified regions (SCARs). Insect Mol. Biol. 8(3):391-397.
5. Brisse, S., Dujardin, J., and Tibayrenc, M. (2000). Identification of six Trypanosoma cruzi lineages by sequence-characterized amplified region markers. Mol. Biochem. Parasitol. 111:95-105.
6. Calienes, A., Fraga, J., Pointier, J., Yong, M., Sanchez, J., Coustau, C., Gutierrez, A., and Theron, A. (2004). Detection and genetic distance of resistant populations of Pseudosuccinea columella (Mollusca: Lymnaeidae) to Fasciola hepatica (Trematoda: Digenea) using RAPD markers. Acta Trop. 92:83-87.
7. Callejas, C., and Ochando, M. D. (2001). Molecular identification (RAPD) of the eight species of the genus Barbus (Cyprinidae) in the Iberian peninsula. J. Fish Biol. 59:1589-1599.
8. Carvalho, S., Caldeira, R. L., Simpson, A. J., and Vidigal, T. H. (2001). Genetic variability and molecular identification of Brazilian Biomphalaria species (Mollusca: Planorbidae). Parasitology 123 (Suppl): S197-S209.
9. Castrillo, L. A., Vandenberg, J. D., and Wraight, S. P. (2003). Strain-specific detection of introduced Beauveria bassiana in agricultural fields by use of sequence-characterized amplified region markers. J. Inverteb. Pathol. 82:75-83.
10. Chung, H., Um, J., Kim, M., Hong, S., Kim, S., Kim, H., Park, S., Kim, S., Hwang, W., and Kim, H. (2002). Determination of the site of origin of Pinellia ternate roots based on RAPD analysis and PCR-RFLP. Hereditas 136:126-129.
11. De Clercq, D., Cognet, S., Pujol, M., Lepoivre, P., and Jijakli, M. H. (2003). Development of a SCAR marker and a semiselective medium for specific quantification of Pichia anomala strain K on apple fruit surfaces. Postharvest Biol. Technol. 29:237-247.
12. Dinesh, K. R., Lim, T. M., Chua, K. L., Chan, W. K., and Phang, V. P. E. (1993). RAPD analysis: An efficient method of DNA fingerprinting in fishes. Zool. Sci. 10:849-854.
13. Fernandez, S., Katsuyama, A. M., Kashiwabara, A. Y., Madeira, A. M. B. N., Durham, A. M., and Gruber, A. (2004). Characterization of SCAR markers of Eimeria spp. of domestic fowl and construction of a public relational database (The Eimeria SCARdb). FEMS Microbiol. Lett. 238:183-188.
14. Gu, W., Post, C. M., Aguirre, G. D., and Ray, K. (1999). Individual DNA bands obtained by RAPD analysis of canine genomic DNA often contain multiple DNA sequences. J. Heredity 90:96-98.
15. Hardrys, H., Balick, M., and Schierwater, B. (1992). Applications of random amplified polymorphic DNA (RAPD) in molecular ecology. Mol. Ecol. 1:55-63.
16. Hedrick, P. (1992). Shooting the RAPDs. Nature 355:679-680.
17. Hennequin, C., Thierry, A., Richard, G. F., Lecointre, G., Nguyen, H. V., Gaillardin, C., and Dujon, B. (2001). Microsatellite typing as a new tool for identification of Saccharomyces cerevisiae strains. J. Clin. Microbiol. 39:551-555.
18. Hernandez, P., de la Rosa, R., Rallo, L., and Dorado, G. (2001). Development of SCAR markers in olive (Olea europaea) by direct sequencing of RAPD products: Applications in olive germplasm evaluation and mapping. Theor. Appl. Genet. 103:788-791.
19. Iizuka, E. (2000). Physical properties of silk thread from cocoons of various wild silkmoths including domestic silkmoth. Int. J. Wild Silkmoths Silk 5:266-269.
20. Jarry, A., Masson, D., Cassagnau, E., Parois, S., Laboisse, D., and Denis, M. G. (2004). Real-time allele-specific amplification for sensitive detection of the BRAF mutation V600E. Mol. Cell. Probes 18:349-352.
21. Jolly, M. S., Sen, S. K., and Ahsan, M. M. (1974). Tasar Culture, Ambika Publishers, Bombay.
22. Kar, P. K., Srivastava, A. K., and Naqvi, A. H. (2000). Changes in voltinism in populations of Antheraea mylitta: Response to photoperiod. Int. J. Wild Silkmoths Silk 5:176-178.
23. Kengne, P., Trung, H. D., Baimai, V., Coosemans, M., and Manguin, S. (2001). A multiplex PCR-based method derived from random amplified polymorphic DNA (RAPD) markers for the identification of species of the Anopheles minimus group in Southeast Asia. Insect Mol. Biol. 10(5):427-435.
24. Lushai, G., Loxdale, H. D., Brookes, C. P., von Mende, N., Harrington, R., and Hardie, J. (1997). Genotypic variation among different phenotypes within aphis clones. Proc. R. Soc. Lond. B Ser. Biol. Sci. 264:725-730.
25. Manguin, S., Kengne, P., Sonnier, L., Harbach, R. E., Baimai, V., Trung, H. D., and Cossemans, M. (2002). SCAR markers and multiplex PCR-based identification of isomorphic species in the Anopheles dirus complex in Southeast Asia. Med. Vet. Entomol. 16:46-54.
26. Marinangeli, P., Angelozzi, D., Ciani, M., Clementi, F., and Mannazzu, I. (2004). Minisatellites in Saccharomyces cerevisiae genes encoding cell wall proteins: A new way towards wine strain characterization. FEMS Yeast Res. 4:427-435.
27. Olivier, M., Meehl, M. A., and Lust, G. (1999). Random amplified polymorphic DNA (RAPD) sequences as markers for canine genetic studies. J. Heredity 90(1):78-82.
28. Paran, I., and Michelmore, R. W. (1993). Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce. Theor. Appl. Genet. 85:985-993.
29. Patel, D. D., Kapoor, A., Ayyagari, A., and Dhole, T. N. (2004). Development of a simple restriction fragment length polymorphism assay for subtyping of coxsackie B viruses. J. Virol. Methods 120(20):167-172.
30. Peigler, R. S. (1993). Wild silks of the world. Am. Entomol. 39:151-161.
31. Peigler, R. S. (1994). Non-sericulture uses of moth cocoons in diverse cultures. Proc. Denver Museum Nat. Hist. Ser. 3(5):1-20.
32. Perring, T. M., Cooper, A. D., Rodriguez, R. J., Farrar, C. A., and Bellow, T. S., Jr. (1993). Identification of a whitefly species by genomic and behavioral studies. Science 259:74-77.
33. Rajkhowa, R. (2000). Structure property correlation of non-mulberry and mulberry silk fibers. Int. J. Wild Silkmoths Silk 5:287-297.
34. Ramser, J., Weising, K., Chikaleke, V., and Kahl, G. (1997). Increased informativeness of RAPD analysis by detection of microsatellite motifs. BioTechniques 23:285-290.
35. Regua-Mangia, A. H., Guth, B. C., da Costa Andrade, J. R., Irino, K., Pacheco, A. B. F., Ferreira, L. C. S., Zahner, V., and Teixeira, L. M. (2004). Genotypic and phenotypic characterization of enterotoxigenic Escherichia coli (ETEC) strains isolated in Rio de Janeiro city, Brazil. FEMS Immunol. Med. Microbiol. 40(2):155-162.
36. Richardson, T., Cato, S., Ramser, J., Kahl, G., and Weising, K. (1995). Hybridization of microsatellites to RAPD: A new source of polymorphic markers. Nucleic Acids Res. 23:3798-3799.
37. Sales, E., Nebauer, S. G., Mus, M., and Segura, J. (2001). Population genetic study in the Balearic endemic plant species Digitalis minora (Scrophulareaceae) using RAPD markers. Am. J. Bot. 88(10):1750-1759.
38. Sambrook, J., and Russel, D. W. (2001). Molecular Cloning: A Laboratory Manual, Vol. 1, 3rd edn. Cold Spring Harbor Laboratory Press, New York.
39. Sanger, F., Nicklen, S., and Coulson, A. R. (1977). DNA sequencing with chain-terminating inhibitors. Cold Spring Harbor Laboratory Press, New York. Proc. Natl. Acad. Sci. U.S.A. 74:5463.
40. Sinha, A. K., Sinha, R. K., Goel, A. K., Sinha, B. R. R. P., and Thangavelu, K. (1994). A review on the breeding and genetic aspect of tropical tasar silkworm, Antheraea mylitta D. Proc. Conf. Cytol. Genet. 4:7-16.
41. Tilsala-Timisjarvi, A., and Alatossava, T. (1998). Strain-specific identification of probiotic Lactobacillus rhamnosus with Randomly Amplified Polymorphic DNA-derived primers. Appl. Environ. Microbiol. 64(12):4816-4819.
42. Wang, X., Yang, Y., Cong, Y., and Duan, D. (2004). DNA fingerprinting of selected Laminaria (Phaeophyta) gametophytes by RAPD markers. Aquaculture 238:143-153.
43. Welsh, J., and McClelland, M. (1990). Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18:7213-7219.
44. Williams, J. G. K., Hanafey, M. K., Rafalski, J., and Tingley, S. (1993). Genetic analysis using random amplified polymorphic DNA markers. Methods Enzymol. 218:704-740.
45. Williams, J. G. K., Kubelik, A. R., Livak, K. J., Rafalski, J. A., and Tingley, S. V. (1990). DNA polymorphisms amplified by arbitrary primers are useful genetic markers. Nucleic Acids Res. 18:6531-6535.
46. Yamagishi, M., Abe, H., Nakano, M., and Nakatsuka, A. (2002). PCR-based molecular markers in Asiatic hybrid lily. Sci. Hortic. 96:225-234.
47. Zhou, X., and Jiao, X. (2004). Investigation of Listeria monocytogenes contamination pattern in local Chinese food market and the tracing of two clinical isolates by RAPD analysis. Food Microbiol. 21:695-702.