Cadmium hyperaccumulation and genetic differentiation of Thlaspi caerulescens populations

Biochemical Systematics and Ecology

Volumn 34, Issue 9, 2006, Pages 667-677

  Basic, Nevena ^a   Salamin, Nicolas ^a   Keller, Catherine ^b   Galland, Nicole ^a   Besnard, Guillaume ^a  

^a UNIVERSITY OF LAUSANNE   (Switzerland)

^b AIX MARSEILLE UNIVERSITY   (France)

Author keywords

Amplified fragment length polymorphism (AFLP); Cadmium (Cd); Genetic differentiation; Hyperaccumulation; Outlier loci; Thlaspi caerulescens

Indexed keywords

CADMIUM; DNA; GENETIC DIFFERENTIATION; GENETIC MARKER; HERB; HYPERACCUMULATION; POLYMORPHISM; POPULATION STRUCTURE; SOIL TYPE;

THLASPI; THLASPI CAERULESCENS;

EID: 33745705421     PISSN: 03051978     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bse.2006.04.001     Document Type: Article

References (58)

1. Acheré V., Favre J.M., Besnard G., and Jeandroz S. Genomic organisation of molecular differentiation in Norway Spruce (Picea abies). Mol. Ecol. 14 (2005) 3191-3201
2. Allard R.W., Jain S.K., and Workman P.L. The genetics of inbreeding species. Adv. Genet. 14 (1968) 55-131
3. Angers B., Magnan P., Plantes M., and Bernatchez L. Canonical correspondence analysis for estimating spatial and environmental effects on microsatellite gene diversity in brook charr (Salvelinus fontinalis). Mol. Ecol. 8 (1999) 1043-1053
4. Assunçao A.G.L., Schat H., and Aarts M.G.M. Thlaspi caerulescens, an attractive model species to study heavy metal hyperaccumulation in plants. New Phytol. 159 (2003) 351-360
5. Assunçao A.G.L., Ten Bookum W.M., Nelissen H.J.M., Vooijs R., Schat H., and Ernst W.H.O. A cosegregation analysis of zinc (Zn) accumulation and Zn tolerance in the Zn hyperaccumulator Thlaspi caerulescens. New Phytol. 159 (2003) 383-390
6. Baker A.J.M. Accumulators and excluders-strategies in the response of plants to heavy metals. J. Plant Nutr. 3 (1981) 643-654
7. Baker A.J.M., McGrath S.P., Reeves D.R., and Smith J.A.C. Metal hyperaccumulator plants: a review of the ecology and physiology of a biological resource for phytoremediation of metal-polluted soils. In: Terry N., and Banuelos G. (Eds). Phytoremediation of Contaminated Soils and Water (2000), CRC Press LLC, Boca Raton, FL, USA 171-188
8. Baker A.J.M., Reeves R.D., and Hajar A.S.M. Heavy metal accumulation and tolerance in British populations of metallophyte Thlaspi caerulescens J. & C. Presl (Brassicaceae). New Phytol. 127 (1994) 61-68
9. Basic N., and Besnard G. Gene polymorphisms for elucidating the genetic structure of the heavy-metal hyperaccumulating trait in Thlaspi caerulescens J. & C. Presl and their cross-genera amplification in Brassicaceae. J. Plant Res. 119 (2006) in press
10. Basic N., Keller C., Fontanillas P., Vittoz P., Besnard G., and Galland N. Cadmium hyperaccumulation and reproductive traits in natural Thlaspi caerulescens populations. Plant Biol. 8 (2006) 64-72
11. Beaumont M.A., and Balding D.J. Identifying adaptive genetic divergence among populations from genome scans. Mol. Ecol. 13 (2004) 969-980
12. Beaumont M.A., and Nichols R.A. Evaluating loci for use in the genetic analysis of population structure. Proc. R. Soc. Lond. Ser. B 263 (1996) 1619-1626
13. Bernard C., Roosens N., Czernic P., Lebrun M., and Verbruggen N. A novel CPx-ATPase from the cadmium hyperaccumulator Thlaspi caerulescens. FEBS Lett. 569 (2004) 140-148
14. Brooks R.R. Plants that Hyperaccumulate Heavy Metals (1998), CAB International, Cambridge pp. 1-14
15. Casgrain P., and Legendre P. The R Package for Multivariate and Spatial Analysis, Version 4.0 df. User's Manual (2001), Département des Sciences Biologiques, Université de Montréal. Available on the website:
16. Cavalli D., Haldemann E.G., Kündig R., Reber D., Roullier J.D., and Schafer M. Carte des matières premières minérales de la Suisse, 1:200 000 (1988), Commission Géotechnique Suisse
17. Cosio C., Martinoia E., and Keller C. Hyperaccumulation of cadmium and zinc in Thlaspi caerulescens and Arabidopsis halleri at the leaf cellular level. Plant Physiol. 134 (2004) 716-725
18. Dice L.R. Measures of the amount of ecologic association between species. Ecology 26 (1945) 297-302
19. Dubois S., Cheptou P.O., Petit C., Meerts P., Poncelet M., Vekemans X., Lefebvre C., and Escarré J. Genetic structure and mating systems of metallicolous and nonmetallicolous populations of Thlaspi caerulescens. New Phytol. 157 (2003) 633-641
20. Escarré J., Lefèbvre C., Gruber W., Leblanc M., Lepart J., Rivière Y., and Delay B. Zinc and cadmium hyperaccumulation by Thlaspi caerulescens J. et C. Presl. from metalliferous and nonmetalliferous sites in the Mediterranean area: implications for phyto-remediation. New Phytol. 145 (2000) 429-437
21. Excoffier L., Smouse P.E., and Quattro J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes. Application to human mitochondrial-DNA restriction data. Genetics 131 (1992) 479-491
22. FAC (Eidgenössische Forschungsanstalt für Agrikulturchemie und Umwelthygiene). Methoden für die Bodenuntersuchungen. Schriftenreihe der FAC 5 (1989), FAC, Bern-Liebefeld, Switzerland
23. Flint-Garcia S.A., Thornsberry J.M., and Buckler IV E.S. Structure of linkage disequilibrium in plants. Annu. Rev. Plant Biol. 54 (2003) 357-374
24. Gaskin J.F., Zhang D.Y., and Bon M.C. Invasion of Lepidium draba (Brassicaceae) in the western United States: distributions and origins of chloroplast DNA haplotypes. Mol. Ecol. 14 (2005) 2331-2341
25. Goudet J. FSTAT (Version 1.2): a computer program to calculate F-statistics. J. Hered. 86 (1995) 485-486
26. Gupta P.K., Rustgi S., and Kulwal P.L. Linkage disequilibrium and association studies in higher plants: present status and future prospects. Plant Mol. Biol. 57 (2005) 461-485
27. Ihaka R., and Gentleman R. R: a language for data analysis and graphics. J. Comput. Graph. Stat. 5 (1996) 299-314
28. Harris S.A., and Ingram R. Chloroplast DNA and biosystematics. The effects of intraspecific diversity and plastid transmission. Taxon 40 (1991) 393-412
29. Jorgensen S., and Mauricio R. Neutral genetic variation among wild North American populations of the weedy plant Arabidopsis thaliana is not geographically structured. Mol. Ecol. 13 (2004) 3403-3413
30. Koch M., Mummenhoff K., and Hurka H. Systematics and evolutionary history of heavy metal tolerant Thlaspi caerulescens in Western Europe: evidence from genetic studies based on isozyme analysis. Biochem. Syst. Ecol. 26 (1998) 823-838
31. Krämer U. Phytoremediation: novel approaches to cleaning up polluted soils. Curr. Opin. Biotechnol. 16 (2005) 133-141
32. Kündig R., Wenger C., Steiger R., and Bianconi F. Karte der Vorkommen mineralischer Rohstoffe der Schweiz, 1.200′000, Blatt 1: Tessin-Uri, mit Erläuterungen (1990), Schweizerischen Geotechnischen Kommission, Zürich
33. Linhart Y.B., and Grant M.C. Evolutionary significance of local genetic differentiation in plants. Ann. Rev. Ecol. Syst. 27 (1996) 237-277
34. Lombi E., Tearall K.L., Howarth J.R., Zhao F.J., Hawkesford M.J., and McGrath S.P. Influence of iron status on cadmium and zinc uptake by different ecotypes of the hyperaccumulator Thlaspi caerulescens. Plant Physiol. 128 (2002) 1359-1367
35. Lombi E., Zhao F.J., Dunham S.J., and McGrath S.P. Cadmium accumulation in populations of Thlaspi caerulescens and Thlaspi goesingense. New Phytol. 145 (2000) 11-20
36. Lombi E., Zhao F.J., McGrath S.P., Young S.D., and Sacchi G.A. Physiological evidence for a high-affinity cadmium transporter highly expressed in a Thlaspi caerulescens ecotype. New Phytol. 149 (2001) 53-60
37. Lynch M., and Milligan B.G. Analysis of population genetic-structure with RAPD markers. Mol. Ecol. 3 (1994) 91-99
38. Macnair M.R. Heavy metal tolerance in plants: a model evolutionary system. Trends Ecol. Evol. 2 (1987) 354-359
39. OIS. Swiss Ordinance Relating to Impacts on the Soils (1st July 1998) SR 814.12, Switzerland
40. Papoyan A., and Kochian L.V. Identification of Thlaspi caerulescens genes that may be involved in heavy metal hyperaccumulation and tolerance. Characterization of a novel heavy metal transporting ATPase. Plant Physiol. 136 (2004) 3814-3823
41. Parisod, C., Besnard, G., Galland, N., 2005. Postglacial chloroplastic phylogeography of the autotetraploid Biscutella laevigata L. (Brassicaceae) in the Western Alps. In: Proceedings of the XVIIth International Botanical Congress, Vienna, Austria.
42. Pence N.S., Larsen P.B., Ebbs S.D., Letham D.L., Lasat M.M., Garvin D.F., Eide D., and Kochian L.V. The molecular physiology of heavy metal transport in the Zn/Cd hyperaccumulator Thlaspi caerulescens. Proc. Natl Acad. Sci. USA 98 (2000) 9995-10000
43. Pollard A.J., Powell K.D., Harper F.A., and Smith J.A. The genetic basis of metal hyperaccumulation in plants. Crit. Rev. Plant Sci. 21 (2002) 539-566
44. Prasad M.N.V. Heavy Metal Stress in Plants: From Biomolecules to Ecosystems. second ed. (2004), Springer-Verlag., Berlin-Heidelberg
45. Reeves R.D., and Brooks R.R. European species of Thlaspi L. (Cruciferae) as indicators of nickel and zinc. J. Geochem. Explor. 18 (1983) 275-283
46. Reeves R.D., Schwartz C., Morel J.L., and Edmondson J. Distribution and metal-hyperaccumulating behaviour of Thlaspi caerulescens and associated metallophytes in France. Int. J. Phytoremed. 3 (2001) 145-172
47. Riley R. The influence of breeding system on the genecology of Thlaspi alpestre L. New Phytol. 55 (1956) 319-330
48. Roosens N., Verbruggen N., Meerts P., Ximénez-Embún P., and Smith J.A.C. Natural variation in cadmium tolerance and its relationship to metal hyperaccumulation for seven populations of Thlaspi caerulescens from Western Europe. Plant Cell Environ. 26 (2003) 1657-1672
49. Rousset F. Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145 (1997) 1219-1228
50. Sanita di Toppi L., and Gabbrielli R. Response to cadmium in higher plants. Environ. Exp. Bot. 41 (1999) 105-130
51. Schmid K.J., Ramos-Onsins S., Ringys-Beckstein H., Weisshaar B., and Mitchell-Olds T. A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphism. Genetics 169 (2005) 1601-1615
52. Schneider S., Roessli D., and Excoffier L. Arlequin Version 2.000: A Software for Population Genetics Data Analysis (2000), Genetics and Biometry Laboratory, University of Geneva, Switzerland
53. Smouse P.E., Long J.C., and Sokal R.R. Multiple-regression and correlation extensions of the Mantel test of matrix correspondence. Syst. Zool. 35 (1986) 627-632
54. Van Rossum F., Bonnin I., Fénart S., Pauwels M., Petit D., and Saumitou-Laprade P. Spatial genetic structure within a metallicolous population of Arabidopsis halleri, a clonal, self-incompatible and heavy-metal-tolerant species. Mol. Ecol. 13 (2004) 2959-2967
55. Weber M., Harada E., Vess C., von Roepenack-Lahaye E., and Clemens S. Comparative microarray analysis of Arabidopsis thaliana and Arabidopsis halleri roots identifies nicotianamine synthase, a ZIP transporter and other genes as potential metal hyperaccumulation factors. Plant J. 37 (2004) 269-281
56. Welten M., and Sutter H.C.R. Atlas de la distribution des ptéridophytes et des phanérogames de la Suisse vol. 1 (1982), Birkhäuser Verlag, Basel 564 pp
57. Zha H.G., Jiang R.F., Zhao F.J., Vooijs R., Schat H., Barker J.H.A., and McGrath S.P. Co-segregation analysis of cadmium and zinc accumulation in Thlaspi caerulescens interecotypic crosses. New Phytol. 163 (2004) 299-312
58. Zhao F.J., Hamon R.E., Lombi E., McLaughlin M.J., and McGrath S.P. Characteristics of cadmium uptake in two contrasting ecotypes of the hyperaccumulator Thlaspi caerulescens. J. Exp. Bot. 53 (2002) 535-543