Distance versus energy fluctuations and electron transfer in single protein molecules

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 73, Issue 6, 2006, Pages

  Tang, Jau ^a,b   Lin, Sheng Hsien ^b  

^a CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^b INSTITUTE OF ATOMIC AND MOLECULAR SCIENCES   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATION ENERGY; DATA ACQUISITION; ELECTRON TRANSITIONS; FRICTION; STATISTICAL METHODS;

ELECTRON-TRANSFER (ET) REACTIONS; LANGEVIN DYNAMICS; SINGLE PROTEIN MOLECULES; SPECTRAL DISTRIBUTION;

PROTEINS;

EID: 33745678500     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.73.061108     Document Type: Article

References (61)

1. W. E. Moerner, Rev. Sci. Instrum. RSINAK 0034-6748 10.1063/1.1589587 74, 3597 (2002);
2. W. E. Moemer, Science SCIEAS 0036-8075 265, 46 (1994).
3. Single Molecule Spectroscopy, edited by, R. Rigler, M. Orrit, and, T. Basché, (Springer-Verlag, Heidelberg, 2002).
4. S. M. Nie, D. T. Chiu, and R. N. Zare, Science SCIEAS 0036-8075 266, 1018 (1994);
5. S. M. Nie and R. N. Zare, Science SCIEAS 0036-8075 26, 567 (1997).
6. S. Weiss, Science SCIEAS 0036-8075 10.1126/science.283.5408.1676 283, 1676 (1999);
7. A. M. Kelley, X. Michalet, and S. Weiss, Science SCIEAS 0036-8075 10.1126/science.105978 292, 1671 (2001).
8. H. P. Lu, L. Y. Xun, and X. S. Xie, Science SCIEAS 0036-8075 10.1126/science.282.5395.1877 282, 1877 (1998).
9. H. Yang, G. Luo, P. Karnchanaphanurach, T. M. Louie, I. Rech, S. Cova, L. Xun, and X. S. Xie, Science SCIEAS 0036-8075 10.1126/science.1086911 302, 262 (2003).
10. R. Zwanzig, Acc. Chem. Res. ACHRE4 0001-4842 10.1021/ar00173a005 23, 148 (1990).
11. J. Wang and P. Wolynes, Chem. Phys. Lett. CHPLBC 0009-2614 10.1016/0009-2614(93)87224-Q 212, 427 (1993);
12. J. Wang and P. Wolynes, Chem. Phys. CMPHC2 0301-0104 10.1016/0301- 0104(93)E0427-W 180, 141 (1994).
13. R. W. Pastor, R. Zwanzig, and A. Szabo, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.472208 105, 3878 (1996);
14. D. J. Bicout, A. M. Berezhkovskii, and A. Szabo, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1332807 114, 2293 (2001).
15. A. V. Barzykin, K. Seki, and M. Tachiya, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1484101 117, 1377 (2002).
16. E. Barkai, R. Metzler, and J. Klafter, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.61.132 61, 132 (2000);
17. R. Metzler, E. Barkai, and J. Klafter, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.82.3563 82, 3563 (1999).
18. H. Yang and X. S. Xie, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1521154 117, 10965 (2002).
19. S. C. Kou and X. S. Xie, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.93.180603 93, 180603 (2004).
20. W. Min, G. Luo, B. J. Cherayil, S. C. Kou, and X. S. Xie, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.94.198302 94, 198302 (2005).
21. H. Yang and X. S. Xie, Chem. Phys. CMPHC2 0301-0104 10.1016/S0301- 0104(02)00672-9 284, 423 (2002).
22. R. Granek and J. Klafter, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.95.098106 95, 098106 (2005).
23. P. Debnath, W. Min, X. S. Xie, and B. J. Cherayil, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.2109809 123, 204903 (2005).
24. J. Tang and R. A. Marcus, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.73.022102 73, 022102 (2006).
25. R. A. Marcus and N. Sutin, Biochim. Biophys. Acta BBACAQ 0006-3002 10.1016/0304-4173(85)90014-X 811, 265 (1985).
26. J. B. Winkler and H. Gray, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 10.1073/pnas.0408029102 102, 3534 (2005).
27. C. C. Moser, J. M. Keske, K. Warncke, R. S. Farid, and P. L. Dutton, Nature (London) NATUAS 0028-0836 10.1038/355796a0 355, 796 (1992).
28. M. Whitlow, A. J. Howard, J. F. Wood, E. W. Voss, and K. D. Hardman, Protein Eng. PRENE9 0269-2139 8, 749 (1995).
29. P. E. Rouse, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1699180 21, 1272 (1953).
30. R. Kimmich and N. Fatkullin, Adv. Polym. Sci. APSIDK 0065-3195 170, 1 (2004).
31. M. Doi and S. F. Edwards, The Theory of Polymer Dynamics (Clarendon Press, Oxford, 1986), Chap.
32. S. L. Yang, J. B. Witkoskie, and J. S. Cao, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1521156 117, 11010 (2002).
33. M. P. Solf and T. A. Vilgis, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.55.3037 55, 3037 (1997).
34. A. Palazoglu, A. Gursoy, Y. Arkun, and B. Erman, J. Comput. Biol. JCOBEM 1066-5277 10.1089/cmb.2004.11.1149 11, 1149 (2004).
35. M. Y. Shen and K. F. Freed, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1544554 118, 5143 (2003);
36. W. H. Tang, X. Y. Chang, and K. F. Freed, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.470010 103, 9492 (1995).
37. G. La Penna, M. Mornino, F. Pioli, A. Perico, R. Fioravanti, J. M. Gruschus, and J. A. Ferretti, Biopolymers BIPMAA 0006-3525 10.1002/(SICI)1097- 0282(199903)49:3<235::AID-BIP5>3.0.CO;2-7 49, 235 (1999).
38. S. Ferree and H. W. Blanch, Biophys. J. BIOJAU 0006-3495 10.1529/biophysj.104.040014 87, 468 (2004).
39. G. Zaccai, Science SCIEAS 0036-8075 10.1126/science.288.5471.1604 288, 1604 (2000).
40. L. Corodone, M. Ferrand, E. Vitrano, and G. Zaccai, Biophys. J. BIOJAU 0006-3495 76, 1043 (1999).
41. X. F. Zhou, J. L. Sun, H. J. An, Y. C. Buo, H. P. Fang, C. Su, X. D. Xiao, W. H. Huang, M. Q. Li, W. Q. Shen, and J. Hu, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.71.062901 71, 062901 (2005).
42. D. Cremer, A. Wu, A. Larsson, and E. Kraka, J. Mol. Model. JMMOFK 0948-5023 6, 396 (2000).
43. A. Ansari, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.477885 110, 1774 (1999).
44. A. Guillerno and J-P. C. Addad, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1446041 116, 3141 (2002).
45. M. E. Ries, P. G. Klein, M. G. Brereton, and I. M. Ward, Macromolecules MAMOBX 0024-9297 10.1021/ma971860b 31, 4950 (1998).
46. G. Tsolou, V. G. Mavrantzas, and D. N. Theodorou, Macromolecules MAMOBX 0024-9297 10.1021/ma0491210 38, 1478 (2005).
47. A. Arbe, J. Colmenero, D. Richter, M. Monkenbusch, L. Willner, and B. Farago, Pramana, J. Phys. PRAMCI 0304-4289 63, 33 (2004).
48. D. J. Plazek, E. Schlosser, A. Schönhals, and K. L. Ngai, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.464788 98, 6488 (1993).
49. S. H. Lin, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1726531 44, 3759 (1966);
50. J. Tang, Chem. Phys. Lett. CHPLBC 0009-2614 10.1016/0009-2614(94)00806-X 227, 170 (1994).
51. K. Huang and A. Rhys, Proc. R. Soc. London, Ser. A PRLAAZ 1364-5021 204, 406 (1950).
52. J. Tang and R. A. Marcus, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.95.107401 95, 107401 (2005);
53. J. Tang and R. A. Marcus, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1993567 123, 054704 (2005).
54. J. Tang, S. N. Dikshit, and J. R. Norris, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.470500 103, 2873 (1995).
55. W. C. Chen and J. Tang (private communication).
56. D. Zhong and A. H. Zewail, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 10.1073/pnas.211440398 98, 11867 (2001).
57. W. Min and X. S. Xie, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.73. 010902 73, 010902 (R) (2006).
58. V. B. P. Leite, L. C. P. Alonso, M. Newton, and J. Wang, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.95.118301 95, 118301 (2005).
59. J. N. Ounchic and P. G. Wolynes, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.464201 98, 2218 (1993).
60. G. R. Kneller and K. Hinsen, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1806134 121, 10278 (2004).
61. G. R. Kneller, Phys. Chem. Chem. Phys. PPCPFQ 1463-9076 10.1039/b502040a 7, 2641 (2005).