Vibrational coherence in bacterial reaction centers with genetically modified B-branch pigment composition

Biochimica et Biophysica Acta - Bioenergetics

Volumn 1757, Issue 5-6, 2006, Pages 369-379

  Yakovlev, Andrei G ^a   Shkuropatova, Tatiana A ^b   Vasilieva, Luidmila G ^c   Shkuropatov, Anatoli Ya ^c   Gast, Peter ^b   Shuvalov, Vladimir A ^a,c  

^a MOSCOW STATE UNIVERSITY   (Russian Federation)

^b LEIDEN UNIVERSITY   (Netherlands)

^c INSTITUTE OF BASIC BIOLOGICAL PROBLEMS   (Russian Federation)

Author keywords

Charge separation; Femtosecond spectroscopy; Mutation; Nuclear wave packet; Pigment replacement; Purple bacterial reaction center

Indexed keywords

BACTERIOCHLOROPHYLL; BACTERIOPHEOPHYTIN; CHLOROPHYLL B; PIGMENT;

ABSORPTION SPECTROSCOPY; ARTICLE; BACTERIAL KINETICS; BLEACHING; COMPARATIVE STUDY; DNA MODIFICATION; ELECTRON; ELECTRON TRANSPORT; MEASUREMENT; NONHUMAN; OSCILLATION; PHOTOCHEMISTRY; PRIORITY JOURNAL; RHODOBACTER SPHAEROIDES; VIBRATION SENSE; WILD TYPE;

BACTERIAL CHROMATOPHORES; BACTERIOCHLOROPHYLLS; ELECTRON TRANSPORT; KINETICS; MUTAGENESIS, SITE-DIRECTED; PHEOPHYTINS; PHOTOSYNTHETIC REACTION CENTER COMPLEX PROTEINS; PIGMENTS, BIOLOGICAL; RHODOBACTER SPHAEROIDES; SPECTRUM ANALYSIS;

BACTERIA (MICROORGANISMS); RHODOBACTER;

EID: 33745595852     PISSN: 00052728     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbabio.2006.05.025     Document Type: Article

References (57)

1. Deisenhofer J., Epp O., Miki K., Huber R., and Michel H. X-ray structure analysis of a membrane protein complex: electron density map at 3 Å resolution and a model of the chromophores of the photosynthetic reaction center from Rhodopseudomonas viridis. J. Mol. Biol. 180 (1984) 385-398
2. Allen J.P., Feher G., Yeates T.O., Komiya H., and Rees D.C. Structure of the reaction center from Rhodobacter sphaeroides R-26: the cofactors. Proc. Natl. Acad. Sci. U. S. A. 84 (1987) 5730-5734
3. Kirmaier C., and Holten D. Electron transfer and charge recombination reactions in wild-type and mutant bacterial reaction centers. In: Deisenhofer J., and Norris J.R. (Eds). The Photosynthetic Reaction Center vol. II (1993), Academic Press, San Diego 49-70
4. Woodbury N.W., and Allen J.P. The pathway, kinetics and thermodynamics of electron transfer in wild type and mutant reaction centers of purple nonsulfur bacteria. In: Blankenship R.E., Madigan M.T., and Bauer C.E. (Eds). Anoxygenic Photosynthetic Bacteria (1995), Kluwer Academic Publishers, Dordrecht 527-557
5. Shuvalov V.A., and Yakovlev A.G. Coupling of nuclear wavepacket motion and charge separation in bacterial reaction centers. FEBS Lett. 540 (2003) 26-34
6. 870 and bacteriopheophytin in Rhodospirillum rubrum reaction centers. FEBS Lett. 91 (1978) 135-139
7. Arlt T., Schmidt S., Kaiser W., Lauterwasser C., Meyer M., Scheer H., and Zinth W. The accessory bacteriochlorophyll: a real electron carrier in primary photosynthesis. Proc. Natl. Acad. Sci. U. S. A. 90 (1993) 11757-11761
8. Shkuropatov A.Ya., and Shuvalov V.A. Electron transfer in pheophytin a-modified reaction centers from Rhodobacter sphaeroides (R-26). FEBS Lett. 322 (1993) 168-172
9. Schmidt S., Arlt T., Hamm P., Huber H., Nägele T., Wachtveitl J., Meyer M., Scheer H., and Zinth W. Energetics of the primary electron transfer reaction revealed by ultrafast spectroscopy on modified bacterial reaction centers. Chem. Phys. Lett. 223 (1994) 116-120
10. Schmidt S., Arlt T., Hamm P., Huber H., Nägele T., Wachtveitl J., Zinth W., Meyer M., and Scheer H. Primary electron-transfer dynamics in modified bacterial reaction centers containing pheopytin-a instead of bacteriopheophytin-a. Spectrochim. Acta, Part A 51 (1995) 1565-1578
11. Holzwarth A.R., and Müller M.G. Energetics and kinetics of radical pairs in reaction centers from Rhodobacter sphaeroides. A femtosecond transient absorption study. Biochemistry 35 (1996) 11820-11831
12. van Stokkum I.H.M., Beekman L.M.P., Jones M.R., van Brederode M.E., and van Grondelle R. Primary electron transfer kinetics in membrane-bound Rhodobacter sphaeroides reaction centers: a global and target analysis. Biochemistry 36 (1997) 11360-11368
13. - state in plant pheophytin-exchanged reaction centers of Rhodobacter sphaeroides R26 at low temperature. Biochemistry 36 (1997) 16231-16238
14. Spörlein S., Zinth W., and Wachtveitl J. Vibrational coherence in photosynthetic reaction centers observed in the bacteriochlorophyll anion band. J. Phys. Chem., B 102 (1998) 7492-7496
15. Spörlein S., Zinth W., Meyer M., Scheer H., and Wachtveitl J. Primary electron transfer in modified bacterial reaction centers: optimization of the first events in photosynthesis. Chem. Phys. Lett. 322 (2000) 454-464
16. Marcus R.A. Early steps in bacterial photosynthesis. Comparison of three mechanisms. In: Breton J., and Vermeglio A. (Eds). The Photosynthetic Bacterial Reaction Center. Structure and Dynamics (1988), Plenum Press, New York 389-398
17. Bixon M., and Jortner J. Coupling of protein modes to electron transfer in bacterial photosynthesis. J. Phys. Chem. 90 (1986) 3795-3800
18. Kitzing E., and Kuhn H. Primary electron transfer in photosynthetic reaction centers. J. Phys. Chem. 94 (1990) 1699-1702
19. Parson W.W., and Warshel A. Spectroscopic properties of photosynthetic reaction centers: 2. Application of the theory to Rhodopseudomonas viridis. J. Am. Chem. Soc. 109 (1987) 6152-6163
20. Fleming G.R., Martin J.-L., and Breton J. Rates of primary electron transfer in photosynthetic reaction centres and their mechanistic implications. Nature (London) 333 (1988) 190-192
21. Larsson S., and Ivashin N.V. Porphyrin analogs in bacterial photosynthesis. J. Appl. Spectrosc. 66 (1999) 539-543
22. Bixon M., Jortner J., Plato M., and Michel-Beyerle M.E. Mechanism of the primary charge separation in bacterial photosynthetic reaction centers. In: Breton J., and Vermeglio A. (Eds). The Photosynthetic Bacterial Reaction Center. Structure and Dynamics (1988), Plenum Press, New York 399-419
23. Fajer J., Brune D.C., Davis M.S., Forman A., and Spaulding L.D. Primary charge separation in bacterial photosynthesis: oxidized chlorophylls and reduced pheophytin. Proc. Natl. Acad. Sci. U. S. A. 72 (1975) 4956-4960
24. Heller B.A., Holten D., and Kirmaier C. Control of electron transfer between the L- and M-sides of photosynthetic reaction centers. Science 269 (1995) 940-945
25. Nagarajan V., Parson W.W., Davis D., and Schenck C.C. Kinetics and free energy gaps of electron-transfer reactions in Rhodobacter sphaeroides reaction centers. Biochemistry 32 (1993) 12324-12336
26. Bixon M., Jortner J., and Michel-Beyerle M.E. A kinetic analysis of the primary charge separation in bacterial photosynthesis. Energy gaps and static heterogeneity. Chem. Phys. 197 (1995) 389-404
27. Kirmaier C., Laporte L., Schenck C.C., and Holten D. The nature and dynamics of the charge-separated intermediate in reaction centers in which bacteriochlorophyll replaces the photoactive bacteriopheophytin: 2. The rates and yields of charge separation and recombination. J. Phys. Chem. 99 (1995) 8910-8917
28. - with respect to P* found from recombination fluorescence measurements in pheophytin-modified reaction centres. Membr. Cell Biol. 12 (1998) 563-569
29. - in plant pheophytin-exchanged bacterial reaction centers probed by the temperature dependence of delayed fluorescence. In: Garab G. (Ed). Photosynthesis: Mechanisms and Effects vol. II (1998), Kluwer Academic Publishers, Dordrecht 783-786
30. Vos M.H., Lambry J.-C., Robles S.J., Youvan D.C., Breton J., and Martin J.-L. Direct observation of vibrational coherence in bacterial reaction centers using femtosecond absorption spectroscopy. Proc. Natl. Acad. Sci. U. S. A. 88 (1991) 8885-8889
31. Vos M.H., Rappaport F., Lambry J.-C., Breton J., and Martin J.-L. Visualization of coherent nuclear motion in a membrane protein by femtosecond spectroscopy. Nature 363 (1993) 320-325
32. Vos M.H., Jones M.R., Hunter C.N., Breton J., Lambry J.-C., and Martin J.-L. Coherent dynamics during the primary electron-transfer reaction in membrane-bound reaction centers of Rhodobacter sphaeroides. Biochemistry 33 (1994) 6750-6757
33. Vos M.H., Jones M.R., Breton J., Lambry J.-C., and Martin J.-L. Vibrational dephasing of long- and short-lived primary donor excited states in mutant reaction centers of Rhodobacter sphaeroides. Biochemistry 35 (1996) 2687-2692
34. Stanley R.J., and Boxer S.G. Oscillations in the spontaneous fluorescence from photosynthetic reaction centers. J. Phys. Chem. 99 (1995) 859-863
35. Streltsov A.M., Vulto S.I.E., Shkuropatov A.Ya., Hoff A.J., Aartsma T.J., and Shuvalov V.A. BA and BB absorbance perturbations induced by coherent nuclear motions in reaction centers from Rhodobacter sphaeroides upon 30-fs excitation of the primary donor. J. Phys. Chem., B 102 (1998) 7293-7298
36. Vos M.H., Jones M.R., and Martin J.-L. Vibrational coherence in bacterial reaction centers: spectroscopic characterisation of motions active during primary electron transfer. Chem. Phys. 233 (1998) 179-190
37. Yakovlev A.G., Shkuropatov A.Y., and Shuvalov V.A. Nuclear wavepacket motion producing a reversible charge separation in bacterial reaction centers. FEBS Lett. 466 (2000) 209-212
38. Yakovlev A.G., and Shuvalov V.A. Formation of bacteriochlorophyll anion band at 1020 nm produced by nuclear wavepacket motion in bacterial reaction centers. J. Chin. Chem. Soc. 47 (2000) 709-714
39. - potential surfaces with subsequent electron transfer to HA in bacterial reaction centers. 1. Room temperature. Biochemistry 41 (2002) 2667-2674
40. A in bacterial reaction centers at 90 K. Electron transfer pathway. Biochemistry 41 (2002) 14019-14027
41. - in bacterial reaction centers. Biochemistry 39 (2000) 8353-8361
42. Novoderezhkin V.I., Yakovlev A.G., van Grondelle R., and Shuvalov V.A. Coherent nuclear and electronic dynamics in primary charge separation in photosynthetic reaction centers: a Redfield theory approach. J. Phys. Chem., B 108 (2004) 7445-7457
43. Katilius E., Turanchik T., Lin S., Taguchi A.K.W., and Woodbury N.W. B-side electron transfer in a Rhodobacter sphaeroides reaction center mutant in which the B-side monomer bacteriochlorophyll is replaced with bacteriopheophytin. J. Phys. Chem., B 103 (1999) 7386-7389
44. Katilius E., Katiliene Z., Lin S., Taguchi A.K.W., and Woodbury N.W. B side electron transfer in a Rhodobacter sphaeroides reaction center mutant in which the B side monomer bacteriochlorophyll is replaced with bacteriopheophytin: low-temperature study and energetics of charge-separated states. J. Phys. Chem., B 106 (2002) 1471-1475
45. Katilius E., Babendure J.L., Katiliene Z., Lin S., Taguchi A.K.W., and Woodbury N.W. Manipulations of the B-side charge-separated states' energetics in the Rhodobacter sphaeroides reaction center. J. Phys. Chem., B 107 (2003) 12029-12034
46. Parson W.W., Chu Z.-T., and Warshel A. Electrostatic control of charge separation in bacterial photosynthesis. Biochim. Biophys. Acta 1017 (1990) 251-272
47. Gunner M.R., Nicholls A., and Honig B. Electrostatic potentials in Rhodopseudomonas viridis reaction centers: implications for the driving force and directionality of electron transfer. J. Phys. Chem. 100 (1996) 4277-4291
48. Watanabe T., and Kobayashi M. Electrochemistry of chlorophylls. In: Scheer H. (Ed). Chlorophylls (1991), CRC Press, Boca Raton 287-315
49. Paddock M.L., Rongey S.H., Feher G., and Okamura M.Y. Pathway of proton transfer in bacterial reaction centers: replacement of glutamic acid 212 in the L subunit by glutamine inhibits quinone (secondary acceptor) turnover. Proc. Natl. Acad. Sci. U. S. A. 86 (1989) 6602-6606
50. de Boer A.L., Neerken S., de Wijn R., Permentier H.P., Gast P., Vijgenboom E., and Hoff A.J. B-branch electron transfer in reaction centers of Rhodobacter sphaeroides assessed with site-directed mutagenesis. Photosynth. Res. 71 (2002) 221-239
51. Goldsmith J.O., and Boxer S.G. Rapid isolation of bacterial photosynthetic reaction centers with an engineered poly-histidine tag. Biochim. Biophys. Acta 1276 (1996) 171-175
52. Gray K.A., Farchaus J.W., Wachtweitl J., Breton J., and Oesterhelt D. Initial characterization of site-directed mutants of tyrosine M210 in the reaction centre of Rhodobacter sphaeroides. EMBO J. 9 (1990) 2061-2070
53. deWinter A., and Boxer S.G. The mechanism of triplet energy transfer from the special pair to the carotenoid in bacterial photosynthetic reaction centers. J. Phys. Chem., B 103 (1999) 8786-8789
54. Parson W.W., and Warshel A. A density-matrix model of photosynthetic electron transfer with microscopically estimated vibrational relaxation time. Chem. Phys. 296 (2004) 201-216
55. Parson W.W., and Warshel A. Dependence of photosynthetic electron-transfer kinetics on temperature and energy in a density-matrix model. J. Phys. Chem., B 108 (2004) 10474-10483
56. Yakovlev A.G., Vasilieva L.G., Shkuropatov A.Ya., Bolgarina T.I., Shkuropatova V.A., and Shuvalov V.A. Mechanism of charge separation and stabilization of separated charges in reaction centers of Chloroflexus aurantiacus and of YM210W(L) mutants of Rhodobacter sphaeroides excited by 20 fs pulses at 90 K. J. Phys. Chem., A Mol. Spectrosc. Kinet. Environ. Gen. Theory 107 (2003) 8330-8338
57. Feick R., Shiozawa J.A., and Ertlmaier A. Biochemical and spectroscopic properties of the reaction center of the green filamentous bacterium, Chloroflexus aurantiacus. In: Blankenship R.E., Madigan M.T., and Bauer C.E. (Eds). Anoxygenic Photosynthetic Bacteria (1995), Kluwer Academic Publishers, Dordrecht 699-708