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Volumn 13, Issue 4, 2006, Pages 882-896

Robust E-values for gapped local alignments

Author keywords

Local alignment; Poisson model; Significance

Indexed keywords

ARTICLE; DATA BASE; E VALUE; HYPOTHESIS; INDEPENDENCE OF SEQUENCE POSITION; MATHEMATICAL PARAMETERS; POISSON DISTRIBUTION; PRIORITY JOURNAL; SCORING SYSTEM; SEQUENCE ALIGNMENT; SIMULATION; STATISTICAL MODEL;

EID: 33745321162     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.2006.13.882     Document Type: Article
Times cited : (5)

References (18)
  • 2
    • 0035863762 scopus 로고    scopus 로고
    • The estimation of statistical parameters for local alignment score distributions
    • Altschul, S.F., Bundschuh, R., Olsen, R., and Hwa, T. 2001. The estimation of statistical parameters for local alignment score distributions. Nucl. Acids. Res. 29, 351-361.
    • (2001) Nucl. Acids. Res. , vol.29 , pp. 351-361
    • Altschul, S.F.1    Bundschuh, R.2    Olsen, R.3    Hwa, T.4
  • 5
    • 0001619220 scopus 로고
    • A phase transition for the score in matching random sequences allowing deletions
    • Arratia, R., and Waterman, M.S. 1991. A phase transition for the score in matching random sequences allowing deletions. Ann. Appl. Prob. 4, 200-225.
    • (1991) Ann. Appl. Prob. , vol.4 , pp. 200-225
    • Arratia, R.1    Waterman, M.S.2
  • 6
    • 0023472826 scopus 로고
    • CpG islands as gene markers in the vertebrate nucleus
    • Bird, A. 1987. CpG islands as gene markers in the vertebrate nucleus. Trends in Genetics 3, 342-347.
    • (1987) Trends in Genetics , vol.3 , pp. 342-347
    • Bird, A.1
  • 7
    • 0036792118 scopus 로고    scopus 로고
    • Evolution of amino acid frequencies in proteins over deep time: Inferred order of introduction of amino acids into the genetic code
    • Brooks, D.J., Fresco, J.R., Lesk, A.M., and Singh, M. 2002. Evolution of amino acid frequencies in proteins over deep time: Inferred order of introduction of amino acids into the genetic code. Mol. Biol. Evol. 19, 1645-1655.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 1645-1655
    • Brooks, D.J.1    Fresco, J.R.2    Lesk, A.M.3    Singh, M.4
  • 8
    • 0036108574 scopus 로고    scopus 로고
    • Rapid sequence estimation in local sequence alignment with gaps
    • Bundschuh, R. 2002. Rapid sequence estimation in local sequence alignment with gaps. J. Comp. Biol. 9, 243-260.
    • (2002) J. Comp. Biol. , vol.9 , pp. 243-260
    • Bundschuh, R.1
  • 9
    • 0000526802 scopus 로고
    • Limit distribution of maximal non-aligned two-sequence segmental score
    • Dembo, A., Karlin, S., and Zeitouni, O. 1994. Limit distribution of maximal non-aligned two-sequence segmental score. Ann. Probab. 22, 2022-2039.
    • (1994) Ann. Probab. , vol.22 , pp. 2022-2039
    • Dembo, A.1    Karlin, S.2    Zeitouni, O.3
  • 11
    • 26444458649 scopus 로고    scopus 로고
    • Large deviations for global maxima of independent superadditive processes with negative drift and an application to optimal sequence alignments
    • Grossman, S., and Yakir, B. 2004. Large deviations for global maxima of independent superadditive processes with negative drift and an application to optimal sequence alignments. Bernoulli 10, 829-845.
    • (2004) Bernoulli , vol.10 , pp. 829-845
    • Grossman, S.1    Yakir, B.2
  • 13
    • 0034647416 scopus 로고    scopus 로고
    • Accurate formula for P-values of gapped local sequence and profile alignments
    • Mott, R. 2000. Accurate formula for P-values of gapped local sequence and profile alignments. J. Mol. Biol. 300, 649-659.
    • (2000) J. Mol. Biol. , vol.300 , pp. 649-659
    • Mott, R.1
  • 14
    • 23044521397 scopus 로고    scopus 로고
    • Approximate p-values for local sequence alignments
    • Siegmund, D., and Yakir, B. 2000. Approximate p-values for local sequence alignments. Annals of Statistics 28, 657-680.
    • (2000) Annals of Statistics , vol.28 , pp. 657-680
    • Siegmund, D.1    Yakir, B.2
  • 15
    • 2442465931 scopus 로고    scopus 로고
    • Correction: Approximate p-values for local sequence alignments
    • Siegmund, D., and Yakir, B. 2003. Correction: Approximate p-values for local sequence alignments. Annals of Statistics 31, 1027-1031.
    • (2003) Annals of Statistics , vol.31 , pp. 1027-1031
    • Siegmund, D.1    Yakir, B.2
  • 16
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith, T.F., and Waterman, M.S. 1981. Identification of common molecular subsequences. J. Mol. Biol. 147, 195-197.
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 17
    • 84972546031 scopus 로고
    • Sequence comparison significance and Poisson approximation
    • Waterman, M.S., and Vingron, M. 1994a. Sequence comparison significance and Poisson approximation. Statist. Sci. 9, 367-381.
    • (1994) Statist. Sci. , vol.9 , pp. 367-381
    • Waterman, M.S.1    Vingron, M.2
  • 18
    • 0028234758 scopus 로고
    • Rapid and accurate estimates of statistical significance for sequence data base searches
    • Waterman, M.S., and Vingron, M. 1994b. Rapid and accurate estimates of statistical significance for sequence data base searches. PNAS 91, 4625-4628.
    • (1994) PNAS , vol.91 , pp. 4625-4628
    • Waterman, M.S.1    Vingron, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.