A poisson model for gapped local alignments

Statistics and Probability Letters

Volumn 60, Issue 1, 2002, Pages 91-100

  Metzler, Dirk ^a   Grossmann, Steffen ^a   Wakolbinger, Anton ^a  

^a GOETHE UNIVERSITY   (Germany)

Author keywords

Gapped local alignment; High score asymptotics; Poisson model; Sequence alignment

Indexed keywords

EID: 0036839280     PISSN: 01677152     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-7152(02)00284-5     Document Type: Article

References (5)

1. Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J., 1990. Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
2. Dembo, A., Karlin, S., Zeitouni, O., 1994. Limit distribution of maximal non-aligned two-sequence segmental score. Ann. Probab. 22, 2022-2039.
3. Siegmund, D., Yakir, B., 2000. Approximate p-values for local sequence alignments. Ann. Statist. 28, 657-680.
4. Smith, T.F., Waterman, M.S., 1981. Identification of common molecular subsequences. J. Mol. Biol. 147, 195-197.
5. Waterman, M., Vingron, M., 1994. Sequence comparison significance and Poisson approximation. Statist. Sci. 9, 367-381.