-
1
-
-
0037560068
-
The effect of acetate pathway mutations on the production of pyruvate in Escherichia coli
-
Toamr A., Eiteman M.A., and Altman E. The effect of acetate pathway mutations on the production of pyruvate in Escherichia coli. Appl. Microbiol. Biotechnol. 62 (2003) 76-82
-
(2003)
Appl. Microbiol. Biotechnol.
, vol.62
, pp. 76-82
-
-
Toamr, A.1
Eiteman, M.A.2
Altman, E.3
-
2
-
-
15244361841
-
Effect of a single-gene knockout on the metabolic regulation in Escherichia coli for d-lactate production under microaerobic condition
-
Zhu J.F., and Shimizu K. Effect of a single-gene knockout on the metabolic regulation in Escherichia coli for d-lactate production under microaerobic condition. Metab. Eng. 7 (2005) 104-115
-
(2005)
Metab. Eng.
, vol.7
, pp. 104-115
-
-
Zhu, J.F.1
Shimizu, K.2
-
3
-
-
0028067589
-
Metabolic responses to substrate futile cycling in Escherichia coli
-
Chao Y.P., and Liao J.C. Metabolic responses to substrate futile cycling in Escherichia coli. J. Biol. Chem. 269 (1994) 5122-5126
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 5122-5126
-
-
Chao, Y.P.1
Liao, J.C.2
-
4
-
-
0032721968
-
Acetate metabolism in a pta mutant of Escherichia coli W3110: importance of maintaining acetyl coenzyme A flux for growth and survival
-
Chang D.E., Shin S., Rhee J.S., and Pan J.G. Acetate metabolism in a pta mutant of Escherichia coli W3110: importance of maintaining acetyl coenzyme A flux for growth and survival. J. Bacteriol. 182 (1999) 6656-6663
-
(1999)
J. Bacteriol.
, vol.182
, pp. 6656-6663
-
-
Chang, D.E.1
Shin, S.2
Rhee, J.S.3
Pan, J.G.4
-
5
-
-
0034058215
-
Catabolism of α-ketoglutarate by a sucA mutant of Bradyrhizobium japonicum: evidence for an alternative tricarboxylic acid cycle
-
Green L.S., Li Y., Emerich D.W., Bergersen F.J., and Day D.A. Catabolism of α-ketoglutarate by a sucA mutant of Bradyrhizobium japonicum: evidence for an alternative tricarboxylic acid cycle. J. Bacteriol. 182 (2000) 2838-2844
-
(2000)
J. Bacteriol.
, vol.182
, pp. 2838-2844
-
-
Green, L.S.1
Li, Y.2
Emerich, D.W.3
Bergersen, F.J.4
Day, D.A.5
-
6
-
-
0141429051
-
Gene expression patterns for metabolic pathway in pgi knockout Escherichia coli with and without phb genes based on RT-PCR
-
Kabir M.M., and Shimizu K. Gene expression patterns for metabolic pathway in pgi knockout Escherichia coli with and without phb genes based on RT-PCR. J. Bacteriol. 105 (2003) 11-31
-
(2003)
J. Bacteriol.
, vol.105
, pp. 11-31
-
-
Kabir, M.M.1
Shimizu, K.2
-
7
-
-
14244270260
-
Analysis of gene expression in Escherichia coli in response to changes of growth-limiting nutrient in chemostat cultures
-
Hua Q., Yang C., Oshima T., Mori H., and Shimizu K. Analysis of gene expression in Escherichia coli in response to changes of growth-limiting nutrient in chemostat cultures. Appl. Environ. Microb. 70 (2004) 2354-2366
-
(2004)
Appl. Environ. Microb.
, vol.70
, pp. 2354-2366
-
-
Hua, Q.1
Yang, C.2
Oshima, T.3
Mori, H.4
Shimizu, K.5
-
8
-
-
0037391699
-
Global metabolic regulation analysis for Escherichia coli K12 based on protein expression by 2-dimensional electrophoresis and enzyme activity measurement
-
Peng L., and Shimizu K. Global metabolic regulation analysis for Escherichia coli K12 based on protein expression by 2-dimensional electrophoresis and enzyme activity measurement. Appl. Microbiol. Biotechnol. 61 (2003) 163-178
-
(2003)
Appl. Microbiol. Biotechnol.
, vol.61
, pp. 163-178
-
-
Peng, L.1
Shimizu, K.2
-
9
-
-
0037330622
-
Global metabolite analysis: the influence of extraction methodology on metabolome profiles of Escherichia coli
-
Maharjan R.P., and Ferenci T. Global metabolite analysis: the influence of extraction methodology on metabolome profiles of Escherichia coli. Anal. Biochem. 313 (2003) 145-154
-
(2003)
Anal. Biochem.
, vol.313
, pp. 145-154
-
-
Maharjan, R.P.1
Ferenci, T.2
-
10
-
-
0029146299
-
13C-labling of proteinogenic amino acids an efficient analytical tool to investigate intermeciary metabolism
-
13C-labling of proteinogenic amino acids an efficient analytical tool to investigate intermeciary metabolism. Eur. J. Biochem. 232 (1995) 433-448
-
(1995)
Eur. J. Biochem.
, vol.232
, pp. 433-448
-
-
Szyperski, T.1
-
11
-
-
0036134642
-
Metabolic flux responses to pyruvate kinase knockout in Escherichia coli
-
Emmerling M., Dauner M., Ponti A., Fiaux J., Hochuli M., Szyperski T., Wuthrich K., Bailey J.E., and Sauer U. Metabolic flux responses to pyruvate kinase knockout in Escherichia coli. J. Bacteriol. 184 (2002) 152-164
-
(2002)
J. Bacteriol.
, vol.184
, pp. 152-164
-
-
Emmerling, M.1
Dauner, M.2
Ponti, A.3
Fiaux, J.4
Hochuli, M.5
Szyperski, T.6
Wuthrich, K.7
Bailey, J.E.8
Sauer, U.9
-
13
-
-
0030791232
-
Aerobic regulation of the sucABCD genes of Escherichia coli, which encode α-ketoglutarate dehydeogenase and succinyl coenzyme A synthetase: roles of arcA, fnr, and the upstream sdhCDAB promoter
-
Park S.J., Chao G., and Gunsalus R.P. Aerobic regulation of the sucABCD genes of Escherichia coli, which encode α-ketoglutarate dehydeogenase and succinyl coenzyme A synthetase: roles of arcA, fnr, and the upstream sdhCDAB promoter. J. Bacteriol. 179 (1997) 4138-4142
-
(1997)
J. Bacteriol.
, vol.179
, pp. 4138-4142
-
-
Park, S.J.1
Chao, G.2
Gunsalus, R.P.3
-
14
-
-
0023339749
-
Studies of the process of renaturation and assembly of Escherichia coli succinyl-CoA synthetase from its alpha and beta subunits
-
Wolodko W.T., and Bridger W.A. Studies of the process of renaturation and assembly of Escherichia coli succinyl-CoA synthetase from its alpha and beta subunits. Biochem. Cell Biol. 65 (1987) 452-457
-
(1987)
Biochem. Cell Biol.
, vol.65
, pp. 452-457
-
-
Wolodko, W.T.1
Bridger, W.A.2
-
15
-
-
0037342698
-
Global transcription analysis of Krebs tricarboxylic acid cycle mutants reveals an alternating pattern of gene expression and effects on hypoxic and oxidative genes
-
McCammon M.T., Epstein C.B., Przybyla-Zawislak B., McAlister-Henn L., and Butow R.A. Global transcription analysis of Krebs tricarboxylic acid cycle mutants reveals an alternating pattern of gene expression and effects on hypoxic and oxidative genes. Mol. Biol. Cell 14 (2003) 958-972
-
(2003)
Mol. Biol. Cell
, vol.14
, pp. 958-972
-
-
McCammon, M.T.1
Epstein, C.B.2
Przybyla-Zawislak, B.3
McAlister-Henn, L.4
Butow, R.A.5
-
16
-
-
31544450286
-
Construction of Escherichia coli K-12 in frame, single-gene knockout mutants: the Keio collection
-
msb4100050-E1
-
Baba T., Ara T., Hasegawa M., Takai Y., Okumura Y., Baba M., Datsenko K.A., Tomita M., Wanner B.L., and Mori H. Construction of Escherichia coli K-12 in frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. (2006) msb4100050-E1
-
(2006)
Mol. Syst. Biol.
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
18
-
-
0037422210
-
13C-labeled acetate and glucose using GC-MS and powerful flux calculation method
-
13C-labeled acetate and glucose using GC-MS and powerful flux calculation method. J. Biotechnol. 101 (2003) 101-117
-
(2003)
J. Biotechnol.
, vol.101
, pp. 101-117
-
-
Zhao, J.1
Shimizu, K.2
-
20
-
-
77957001185
-
Assays of intermediates of the citric acid cycle and related compounds by flourometric enzyme methods
-
Lowenstein J.M. (Ed), Academic Press, New York
-
Williamson J.R., and Corkey B.E. Assays of intermediates of the citric acid cycle and related compounds by flourometric enzyme methods. In: Lowenstein J.M. (Ed). Citric Acid Cycle, Methods in Enzymology vol. 8 (1969), Academic Press, New York 434-513
-
(1969)
Citric Acid Cycle, Methods in Enzymology
, vol.8
, pp. 434-513
-
-
Williamson, J.R.1
Corkey, B.E.2
-
22
-
-
0141504947
-
Analysis of Escherichia coli anaplerotic metabolism and its regulation mechanisms from the metabolic responses to altered dilution rates and phosphoenolpyruvate carboxykinase knockout
-
Yang C., Hua Q., Baba T., Mori H., and Shimizu K. Analysis of Escherichia coli anaplerotic metabolism and its regulation mechanisms from the metabolic responses to altered dilution rates and phosphoenolpyruvate carboxykinase knockout. Biotechnol. Bioeng. 84 (2003) 129-144
-
(2003)
Biotechnol. Bioeng.
, vol.84
, pp. 129-144
-
-
Yang, C.1
Hua, Q.2
Baba, T.3
Mori, H.4
Shimizu, K.5
-
24
-
-
33745288386
-
Control of carbon flux to acetate excretion during overflow in Escherichia coli
-
El-Mansi E.M., and Holms W.H. Control of carbon flux to acetate excretion during overflow in Escherichia coli. Biotechnol. Bioeng. 35 (1989) 732-738
-
(1989)
Biotechnol. Bioeng.
, vol.35
, pp. 732-738
-
-
El-Mansi, E.M.1
Holms, W.H.2
-
25
-
-
0026832754
-
Acetic acid formation in Escherichia coli fermentation
-
Han K., Lim H.C., and Hong J. Acetic acid formation in Escherichia coli fermentation. Biotech. Bioeng. 39 (1992) 663-671
-
(1992)
Biotech. Bioeng.
, vol.39
, pp. 663-671
-
-
Han, K.1
Lim, H.C.2
Hong, J.3
-
26
-
-
0028052113
-
Acetate metabolism by Escherichia coli in high-cell-density fermentation
-
Kleman G.L., and Strohl W.R. Acetate metabolism by Escherichia coli in high-cell-density fermentation. Appl. Environ. Microbiol. 60 (1994) 3952-3958
-
(1994)
Appl. Environ. Microbiol.
, vol.60
, pp. 3952-3958
-
-
Kleman, G.L.1
Strohl, W.R.2
-
27
-
-
0029328409
-
Metabolic engineering of Escherichia coli to enhance recombinant protein production through acetate reduction
-
Aristidou A.A., San K.Y., and Bennett G.N. Metabolic engineering of Escherichia coli to enhance recombinant protein production through acetate reduction. Biotechnol. Prog. 11 (1995) 475-478
-
(1995)
Biotechnol. Prog.
, vol.11
, pp. 475-478
-
-
Aristidou, A.A.1
San, K.Y.2
Bennett, G.N.3
-
28
-
-
0030853330
-
Reduction of aerobic acetate production by Escherichia coli
-
Farmer W.R., and Liao J.C. Reduction of aerobic acetate production by Escherichia coli. Appl. Environ. Microbiol. 63 (1997) 3205-3210
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 3205-3210
-
-
Farmer, W.R.1
Liao, J.C.2
-
29
-
-
0032484705
-
Proposed mechanism of acetate accumulation in two recombinant Escherichia coli strains during high density fermentation
-
Van de Walle M., and Shiloach J. Proposed mechanism of acetate accumulation in two recombinant Escherichia coli strains during high density fermentation. Biotechnol. Bioeng. 57 (1998) 71-78
-
(1998)
Biotechnol. Bioeng.
, vol.57
, pp. 71-78
-
-
Van de Walle, M.1
Shiloach, J.2
-
30
-
-
0024586696
-
Anaerobic growth defects resulting from gene fusions affecting succinyl-CoA synthetase in Escherichia coli K12
-
Mat-Jan F., Williams C.R., and Clark D.P. Anaerobic growth defects resulting from gene fusions affecting succinyl-CoA synthetase in Escherichia coli K12. Mol. Gen. Genet. 215 (1989) 276-280
-
(1989)
Mol. Gen. Genet.
, vol.215
, pp. 276-280
-
-
Mat-Jan, F.1
Williams, C.R.2
Clark, D.P.3
-
31
-
-
0037025146
-
Dynamic modeling of the central carbon metabolism of Escherichia coli
-
Chassagnole C., Noisommit-Rizzi N., Schmid J.W., Mauch K., and Reuss M. Dynamic modeling of the central carbon metabolism of Escherichia coli. Biotechnol. Bioeng. 79 (2002) 53-73
-
(2002)
Biotechnol. Bioeng.
, vol.79
, pp. 53-73
-
-
Chassagnole, C.1
Noisommit-Rizzi, N.2
Schmid, J.W.3
Mauch, K.4
Reuss, M.5
-
32
-
-
2442675518
-
Effect of a pyruvate kinase (pykF-gene) knockout mutation on the control of gene expression and metabolic fluxed in Escherichia coli
-
Siddiquee K.A.Z., Arauzo-Bravo M.J., and Shimizu K. Effect of a pyruvate kinase (pykF-gene) knockout mutation on the control of gene expression and metabolic fluxed in Escherichia coli. FEMS Microbiol. Lett. 235 (2004) 25-33
-
(2004)
FEMS Microbiol. Lett.
, vol.235
, pp. 25-33
-
-
Siddiquee, K.A.Z.1
Arauzo-Bravo, M.J.2
Shimizu, K.3
-
33
-
-
33745232897
-
-
F.C. Neidhardt, Escherichia coli and Salmonella Cellular and Molecular Biology, second ed, 1996, pp. 189-198.
-
-
-
-
34
-
-
17644369246
-
Impact of global transcriptional regulation by arcA, arcB, Cra, Crp, Cya, Fnr, and Mlc on glucose catabolism in Escherichia coli
-
Perrenoud A., and Sauer U. Impact of global transcriptional regulation by arcA, arcB, Cra, Crp, Cya, Fnr, and Mlc on glucose catabolism in Escherichia coli. J. Bacteriol. 187 (2005) 3171-3179
-
(2005)
J. Bacteriol.
, vol.187
, pp. 3171-3179
-
-
Perrenoud, A.1
Sauer, U.2
-
35
-
-
0027980258
-
Regulation of the citrate synthase (gltA) gene of Escherichia coli in response to anaerobiosis and carbon supply: role of the arcA gene product
-
Park S.J., Mccabe J., Turna J., and Gunsalus R.P. Regulation of the citrate synthase (gltA) gene of Escherichia coli in response to anaerobiosis and carbon supply: role of the arcA gene product. J. Bacteriol. 176 (1994) 5086-5092
-
(1994)
J. Bacteriol.
, vol.176
, pp. 5086-5092
-
-
Park, S.J.1
Mccabe, J.2
Turna, J.3
Gunsalus, R.P.4
-
36
-
-
0028856397
-
Oxygen, iron, carbon, and superoxide control of the fumarase fumA and fumC genes of Escherichia coli: role of the arcA, fnr, and soxR gene products
-
Park S.J., and Gunsalus R.P. Oxygen, iron, carbon, and superoxide control of the fumarase fumA and fumC genes of Escherichia coli: role of the arcA, fnr, and soxR gene products. J. Bacteriol. 177 (1995) 6255-6262
-
(1995)
J. Bacteriol.
, vol.177
, pp. 6255-6262
-
-
Park, S.J.1
Gunsalus, R.P.2
-
37
-
-
0024289985
-
In vivo phosphorylation of isocitrate lyase from Escherichia coli D5H3G7
-
Hoyt J.C., and Reeves H.C. In vivo phosphorylation of isocitrate lyase from Escherichia coli D5H3G7. Biochem. Biophys. Res. Commun. 153 (1988) 875-880
-
(1988)
Biochem. Biophys. Res. Commun.
, vol.153
, pp. 875-880
-
-
Hoyt, J.C.1
Reeves, H.C.2
-
38
-
-
0022212761
-
Compensatory phosphorylation of isocitrate dehydrogenase. A mechanism for adaptation to the intracellular environment
-
Laporte D.C., Thorsness P.E., and Koshland Jr. D.E. Compensatory phosphorylation of isocitrate dehydrogenase. A mechanism for adaptation to the intracellular environment. J. Biol. Chem. 260 (1985) 10563-10568
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 10563-10568
-
-
Laporte, D.C.1
Thorsness, P.E.2
Koshland Jr., D.E.3
-
39
-
-
0023556815
-
Regulation of the enzymes at the branchpoint between the citric acid cycle and the glyoxylate bypass in Escherichia coli
-
Nimmo H.G., Borthwick A.C., el-Mansi E.M., Holms W.H., MacKintosh C., and Nimmo G.A. Regulation of the enzymes at the branchpoint between the citric acid cycle and the glyoxylate bypass in Escherichia coli. Biochem. Soc. Symp. 54 (1987) 93-101
-
(1987)
Biochem. Soc. Symp.
, vol.54
, pp. 93-101
-
-
Nimmo, H.G.1
Borthwick, A.C.2
el-Mansi, E.M.3
Holms, W.H.4
MacKintosh, C.5
Nimmo, G.A.6
-
40
-
-
0014374388
-
Genetic control of isocitrate lyase activity in Escherichia coli
-
Brice C.B., and Kornberg H.L. Genetic control of isocitrate lyase activity in Escherichia coli. J. Bacteriol. 96 (1968) 2185-2186
-
(1968)
J. Bacteriol.
, vol.96
, pp. 2185-2186
-
-
Brice, C.B.1
Kornberg, H.L.2
-
41
-
-
0019812276
-
Role of gene fadR in Escherichia coli acetate metabolism
-
Maloy S.R., and Nunn W.D. Role of gene fadR in Escherichia coli acetate metabolism. J. Bacteriol. 148 (1981) 83-90
-
(1981)
J. Bacteriol.
, vol.148
, pp. 83-90
-
-
Maloy, S.R.1
Nunn, W.D.2
-
42
-
-
0028815572
-
Regulation of malate dehydrogenase (mdh) gene expression in Escherichia coli in response to oxygen, carbon, and heme availability
-
Park S.J., Cotter P.A., and Gunsalus R.P. Regulation of malate dehydrogenase (mdh) gene expression in Escherichia coli in response to oxygen, carbon, and heme availability. J. Bacteriol. 177 (1995) 6652-6656
-
(1995)
J. Bacteriol.
, vol.177
, pp. 6652-6656
-
-
Park, S.J.1
Cotter, P.A.2
Gunsalus, R.P.3
-
43
-
-
0344443759
-
A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli
-
Fischer E., and Sauer U. A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli. J. Biol. Chem. 278 (2003) 46446-46451
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 46446-46451
-
-
Fischer, E.1
Sauer, U.2
-
44
-
-
0014429571
-
Kinetics of Escherichia coli B d-lactate dehydrogenase and evidence for pyruvate-controlled change in conformation
-
Tarmy E.M., and Kaplan N.O. Kinetics of Escherichia coli B d-lactate dehydrogenase and evidence for pyruvate-controlled change in conformation. J. Biol. Chem. 243 (1968) 2587-2596
-
(1968)
J. Biol. Chem.
, vol.243
, pp. 2587-2596
-
-
Tarmy, E.M.1
Kaplan, N.O.2
-
45
-
-
0034741113
-
Regulation of ldhA gene, encoding the fermentative lactate dehydrogenase of Escherichia coli
-
Jiang G.R., Nikolova S., and Clark D.P. Regulation of ldhA gene, encoding the fermentative lactate dehydrogenase of Escherichia coli. Microbiology 147 (2001) 2437-2446
-
(2001)
Microbiology
, vol.147
, pp. 2437-2446
-
-
Jiang, G.R.1
Nikolova, S.2
Clark, D.P.3
-
46
-
-
0017852111
-
Succinate dehydrogenase-dependent nutritional requirement for succinate in mutants of Escherichia coli K12
-
Creaghan I.T., and Guest J.R. Succinate dehydrogenase-dependent nutritional requirement for succinate in mutants of Escherichia coli K12. J. Gen. Microbiol. 107 (1978) 1-13
-
(1978)
J. Gen. Microbiol.
, vol.107
, pp. 1-13
-
-
Creaghan, I.T.1
Guest, J.R.2
-
47
-
-
33646568438
-
Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research
-
Kitagawa M., Ara T., Arifuzzaman M., Ioka-Nakamichi T., Inamoto E., Toyonaga H., and Mori H. Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 (2005) 291-299
-
(2005)
DNA Res.
, vol.12
, pp. 291-299
-
-
Kitagawa, M.1
Ara, T.2
Arifuzzaman, M.3
Ioka-Nakamichi, T.4
Inamoto, E.5
Toyonaga, H.6
Mori, H.7
|