Characterization of a novel cyclomaltodextrinase expressed from environmental DNA isolated from Bor Khleung hot spring in Thailand

FEMS Microbiology Letters

Volumn 260, Issue 1, 2006, Pages 91-99

  Tang, Kittapong ^a   Utairungsee, Tanatchaporn ^a   Kanokratana, Pattanop ^a   Sriprang, Rutchadaporn ^a   Champreda, Verawat ^a   Eurwilaichitr, Lily ^a   Tanapongpipat, Sutipa ^a  

^a NATIONAL SCIENCE AND TECHNOLOGY DEVELOPMENT AGENCY   (Thailand)

Author keywords

amylase family; Cyclomaltodextrinase; Environmental DNA

Indexed keywords

AMINO ACID; AMYLASE; CYCLOMALTODEXTRIN; CYCYCLOMALTODEXTRINASE; DNA; DNA FRAGMENT; GENE PRODUCT; GLUCOSE; HEPTOSE; MALTODEXTRIN; MALTOHEPTAOSE; MALTOSE; MALTOTRIOSE; MONOMER; PRIMER DNA; PULLULAN; STARCH; UNCLASSIFIED DRUG; VIRUS ENVELOPE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; COMMUNITY; CONTROLLED STUDY; DEGENERATION; DNA ISOLATION; DNA SEQUENCE; ENVELOPE GENE; ENVIRONMENT; ENZYME ANALYSIS; ENZYME ISOLATION; ENZYME PURIFICATION; EXPLORATORY RESEARCH; GENE EXPRESSION; GENE IDENTIFICATION; GENETIC CODE; GENETIC CONSERVATION; GENOME; MICROBIAL DIVERSITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PICHIA PASTORIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN FAMILY; PROTEIN FUNCTION; PROTEIN HYDROLYSIS; PROTEIN SECRETION; QUANTUM YIELD; SEDIMENT; SOIL; SOLUBILITY; THAILAND; THERMAL SPRING;

AMINO ACID SEQUENCE; GEOLOGIC SEDIMENTS; GLYCOSIDE HYDROLASES; HOT SPRINGS; MOLECULAR SEQUENCE DATA; PICHIA; POLYMERASE CHAIN REACTION; SOIL MICROBIOLOGY;

PICHIA PASTORIS;

EID: 33745030087     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2006.00308.x     Document Type: Article

References (25)

1. Abe A Tonozuka T Sakano Y Kamitori S 2004 Complex structures of Thermoactinomyces vulgaris R-47 α-amylase 1 with malto-oligosaccharides demonstrate the role of domain N acting as a starch-binding domain. J Mol Biol 335 : 811 822.
2. Bendtsen JD Nielsen H Heijne GV Brunak S 2004 Improved prediction of signal peptides: signalP 3.0. J Mol Biol 340 : 783 795.
3. Cha HJ Yoon HG Kim YW Lee HS Kim JW Kweon KS Oh BH Park KH 1998 Molecular and enzymatic characterization of a maltogenic amylase that hydrolyzes and transglycosylates acarbose. Eur J Biochem 253 : 251 262.
4. Chun KT Edenberg HJ Kelley MR Goebl MG 1997 Rapid amplification of uncharacterized transposon-tagged DNA sequences from genomic DNA. Yeast 13 : 233 240.
5. Daniel R 2004 The soil metagenome - a rich resource for the discovery of novel natural products. Curr Opin Biotechnol 15 : 199 204.
6. Henrissat B Teeri TT Warren RAJ 1998 A scheme for designing enzymes that hydrolyse the polysaccharides in the cell walls of plants. FEBS Lett 425 : 352 354.
7. Hondoh H Kuriki T Matsuura Y 2003 Three-dimensional structure and substrate binding of Bacillus stearothermophilus neopullulanase. J Mol Biol 326 : 177 188.
8. James M Cregg JM Vedvick TS Raschke WC 1993 Recent advances in the expression of foreign genes in Pichia pastoris. Bio/Technology 11 : 905 910.
9. Kanokratana P Chanapan S Pootanakit K Eurwilaichitr L 2004 Diversity and abundance of Bacteria and Archaea in the Bor Khlueng hot spring in Thailand. J Basic Microbiol 44 : 430 444.
10. Kim TJ Shin JH Oh JH, et al 1998 Analysis of the gene encoding cyclomaltodextrinase from Alkalophilic Bacillus sp. I-5 and characterization of enzymatic properties. Arch Biochem Biophys 353 : 221 227.
11. Kim TJ Park WS Choi SK Yoon YJ Park KH Kim JW 2000 Molecular cloning and characterization of a thermostable pullulanase from a Thermus strain IM6501. Food Sci Biotechnol 9 : 188 194.
12. Kuriki T Imanaka T 1999 The concept of the α-amylase family: structural similarity and common catalytic mechanism. J Biosci Bioeng 87 : 557 565.
13. Lee MH Kim YW Kim TJ Park CS Kim JW Moon TW Park KH 2002 A novel amylolytic enzyme from Thermotoga maritima, resembling cyclodextrinase and α-glucosidase, that liberates glucose from the reducing end of the substrates. Biochem Biophys Res Commun 295 : 818 825.
14. Lorenz P Liebeton K Niehaus F Eck J 2002 Screening for novel enzymes for biocatalytic processed: accessing the metagenome as a resource of novel functional sequence space. Curr Opin Biotechnol 13 : 572 577.
15. Miller GL 1959 Use of dinitrosalycylic acid for determination of reducing sugar. Anal Chem 31 : 426 428.
16. Oslancová A Janeček Š 2002 Oligo-1,6-glucosidase and neopullulanase enzyme subfamilies from the α-amylase family defined by the fifth conserved sequence region. Cell Mol LifeSci 59 : 1945 1959.
17. Park KH Kim TJ Cheong TK Kim JW Oh BH Svensson B 2000 Structure, specificity and function of cyclomaltodextrinase, a multispecific enzyme of the α-amylase family. Biochim Biophys Acta 1478 : 165 185.
18. Radomski C Seow K Warren R Yap W 1998 Method for isolating xylanase gene sequences from soil DNA, composition useful in such method and compositions obtained thereby. US Patent US 5849491.
19. Richardson TH Tan X Frey G Callen W Cabell M Lam D Macomber J Short JM Robertson DE Miller C 2002 A novel, high performance enzyme for starch liquefaction. J Biol Chem 277 : 26501 26507.
20. Seow KT Meurer G Gerlitz M Wendt-Pienkowski E Hutchinson CR Davies J 1997 A study of iterative type II polyketide synthases, using bacterial genes cloned from soil DNA: a means to access and use genes from uncultured microorganisms. J Bacteriol 179 : 7360 7368.
21. Sunna A Bergquist PL 2003 A gene encoding a novel extremely thermostable 1,4-β-xylanase isolated directly from an environmental DNA sample. Extremophiles 7 : 63 70.
22. Turner P Labes A Fridjonsson OH Hreggvidson GO Schonheit P Kristjansson JK Holst O Karlsson EN 2005 Two novel cyclodextrin-degrading enzymes isolated from thermophilic bacteria have similar domain structures but differ in oligomeric state and activity profile. J Biosci Bioeng 100 : 380 390.
23. Van der Maarel MJEC Van der Veen B Uitdehaag JCM Leemhuis H Dijkhuizen L 2002 Properties and applications of starch-converting enzymes of the α-amylase family. J Biotechnol 94 : 137 155.
24. Yokota T Tonozuka T Shimura Y Ichikawa K Kamitori S Sakano Y 2001 Structures of Thermoactinomyces vulgaris R-47 α-amylase II complexed with substrate analogues. Biosci Biotechnol Biochem 65 : 401 408.
25. Zhou J Bruns MA Tiedje JM 1996 DNA recovery from soils of diverse compositions. Appl Environ Microbiol 62 : 316 322.