Short-term impact of disturbance on genetic diversity and structure of Indonesian populations of the butterfly Drupadia theda in East Kalimantan

Molecular Ecology

Volumn 15, Issue 8, 2006, Pages 2069-2081

  Fauvelot, C ^a,c   Cleary, D F R ^a,b   Menken, S B J ^a  

^a UNIVERSITY OF AMSTERDAM   (Netherlands)

^b NATURALIS BIODIVERSITY CENTER   (Netherlands)

^c UNIVERSITY OF BOLOGNA   (Italy)

Author keywords

Bottleneck; Disturbance; Gene flow; Genetic diversity; Lepidoptera; mtDNA

Indexed keywords

CYTOCHROME C OXIDASE; MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; BUTTERFLY; FIRE; GENETIC VARIABILITY; GENETICS; HAPLOTYPE; POPULATION GENETICS;

ANIMALS; BUTTERFLIES; DNA, MITOCHONDRIAL; ELECTRON TRANSPORT COMPLEX IV; FIRES; GENETICS, POPULATION; HAPLOTYPES; VARIATION (GENETICS);

DRUPADIA THEDA; LEPIDOPTERA; LYCAENIDAE;

EID: 33745023323     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2006.02920.x     Document Type: Article

References (66)

1. Boom R Sol CJA Salimans MMM et al. 1990 Rapid and simple method for purification of nucleic acids. Journal of Clinical Microbiology, 28, 495 503.
2. Brookes MI Graneau YA King P et al. 1997 Genetic analysis of founder bottlenecks in the rare British butterfly Plebejus argus. Conservation Biology, 11, 648 661.
3. Brown KA Gurevitch J 2004 Long-term impacts of logging on forest diversity in Madagascar. Proceedings of the National Academy of Sciences, USA, 101, 6045 6049.
4. Cannon CH Peart DR Leighton M 1998 Tree species diversity in commercially logged Bornean rain forest. Science, 281, 1366 1368.
5. Caterino MS Cho S Sperling FAH 2000 The current state of insect molecular systematics: a thriving tower of Babel. Annual Review of Entomology, 45, 1 54.
6. Chakraborty R Nei M 1976 Bottleneck effects on average heterozygosity and genetic distance with the stepwise mutation model. Evolution, 31, 347 356.
7. Cleary DFR 2003 An examination of scale of assessment, logging and ENSO-induced fires on butterfly diversity in Borneo. Oecologia, 135, 313 321.
8. Cleary DFR 2004 Assessing the use of butterflies as indicators of logging in Borneo at three taxonomic levels. Journal of Economical Entomology, 97, 429 435.
9. Cleary DFR Genner MJ 2004 Changes in rain forest butterfly diversity following major ENSO-induced fires in Borneo. Global Ecology and Biogeography, 13, 129 140.
10. Cleary DFR Grill A 2004 Butterfly response to severe ENSO-induced forest fires in Borneo. Ecological Entomology, 29, 666 676.
11. Cleary DFR Mooers AØ 2004 Butterfly species richness and community composition in forests affected by ENSO-induced burning and habitat isolation in Borneo. Journal of Tropical Ecology, 20, 359 367.
12. Cleary DFR Priadjati A 2005 Vegetation responses to burning in a rain forest in Borneo. Plant Ecology, 177, 145 163.
13. Cleary DFR Mooers AØ Eichhorn KAO et al. 2004 Diversity and community composition of butterflies and odonates in an ENSO-induced fire affected habitat mosaic: a case study from East Kalimantan, Indonesia. Oikos, 105, 426 446.
14. Colson I Hughes RN 2004 Rapid recovery of genetic diversity of dogwhelk (Nucella lapillus L.) populations after local extinction and colonization contradicts predictions from life-history characteristics. Molecular Ecology, 13, 2223 2233.
15. Depaulis F Veuille M 1998 Neutrality tests based on the distribution of haplotypes under an infinite-site model. Molecular Biology and Evolution, 15, 1788 1790.
16. Elliot JN 1992 The Butterflies of the Malay Peninsula. Malayan Nature Society Kuala Lumpur, Malaysia.
17. England PR Osler GHR Woodworth LM et al. 2003 Effects of intense versus diffuse population bottleneck. Conservation Genetics, 4, 595 604.
18. Excoffier L Smouse PE Quattro JM 1992 Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 497 491.
19. Frankham R 1995 Inbreeding and extinction: a threshold effect. Conservation Biology, 9, 792 799.
20. Frankham R Ballou JD Briscoe DA 2002 Introduction to Conservation Genetics. Cambridge University Press, Cambridge, UK.
21. Hall TA 1999 bioedit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95 98.
22. Hamer KC Hill JK Benesick S et al. 2003 Ecology of butterflies in natural and selectively logged forests of northern Borneo: the importance of habitat heterogeneity. Journal of Applied Ecology, 40, 150 162.
23. Hansson B Bensch S Hasselquist D et al. 2000 Increase of genetic variation over time in a recently founded population of great reed warblers (Acrocephalus arundinaceus) revealed by microsatellites and DNA fingerprinting. Molecular Ecology, 9, 1529 1538.
24. Harper GL Maclean N Goulson D 2003 Microsatellite markers to assess the influence of population size, isolation and demographic change on the genetic structure of the UK butterfly Polyommatus bellargus. Molecular Ecology, 12, 3349 3357.
25. Harrison RD 2000 Repercussions of El Niño: drought causes extinction and the breakdown of mutualism in Borneo. Proceedings of the Royal Society of London. Series B, Biological Sciences, 267, 911 915.
26. Hillis DM Moritz C 1990 Molecular Systematics. Sinauer Associates, Sunderland, Massachusetts.
27. Hoffmann AA Hinrichs A Siegert F 1999) Fire damage in East Kalimantan in 1997/98 related to land use and vegetation classes: satellite radar inventory results and proposals for further actions. Integrated Forest Fire Management Project, Samarinda, East Kalimantan, Indonesia. IFFM - SFMP Report No. 1a, pp 44.
28. Holmgren M Scheffer M Ezcurra E Gutiérrez JR Mohren GMJ 2001 El Niño effects on the dynamics of terrestrial ecosystems. Trends in Ecology & Evolution, 16, 89 94.
29. Hudson RR 1990 Gene genealogies and the coalescent process. In : Oxford Surveys in Evolutionary Biology (eds Futuyma D Antonovics J, pp. 1 44. Oxford University Press, Oxford.
30. Igarashi S Fukada H 1997 The Life Histories of Asian Butterflies, Vol. 1. Tokai University Press, Tokyo, Japan.
31. Igarashi S Fukada H 2000 The Life Histories of Asian Butterflies, Vol. 1. Tokai University Press, Tokyo, Japan.
32. Keller LF Jeffery KJ Arcese P et al. 2001 Immigration and the ephemerality of a natural population bottleneck: evidence from molecular markers. Proceedings of the Royal Society of London. Series B, Biological Sciences, 268, 1387 1394.
33. Kruskal JB Wish M 1978 Multidimensional Scaling. Sage Publications, London.
34. Kumar S Tamura K Nei M 1993 mega: Molecular Evolutionary Genetics Analysis. Pennsylvania State University, University Park, Pennsylvania.
35. Laurance WF 2003 Slow burn: the insidious effects of surface fires on tropical forests. Trends in Ecology & Evolution, 18, 209 212.
36. Lefèvre F Bady B Fallour-Rubio D Ghosn D Bariteau M 2004 Impact of founder population, drift and selection on the genetic diversity of a recently translocated tree population. Heredity, 93, 5542 5550.
37. Lewis OT 2001 Effects of experimental selective logging on tropical butterflies. Conservation Biology, 15, 389 400.
38. Mackey RL Currie DJ 2000 A re-examination of the expected effects of disturbance on diversity. Oikos, 88, 483 493.
39. Malcolm JR Ray JC 2000 Influence of timber extraction routes on Central African small mammals communities, forest structure, and tree diversity. Conservation Biology, 14, 1623 1638.
40. Nei M 1987 Molecular Evolutionary Genetics. Columbia University Press, New York.
41. Nicholas KB Nicholas HB 1997 genedoc: a tool for editing and annotating multiple sequence alignments. Distributed by the authors.
42. Queney G Ferrand N Marchandeau S et al. 2000 Absence of a genetic bottleneck in a wild rabbit (Oryctolagus cuniculus) population exposed to a severe viral epizootic. Molecular Ecology, 9, 1253 1264.
43. Rice WR 1989 Analysing tables of statistical tests. Evolution, 43, 223 225.
44. Robinson GS Ackery PR Kitching IJ Beccaloni GW Hernández LM 2001 Hostplants of the Moth and Butterfly Caterpillars of the Oriental Region. The Natural History Museum, London, and United Selangor Press Sdn Bhd, Kuala Lumpur, Malaysia.
45. Rogers AR Harpending H 1992 Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution, 9, 552 569.
46. Rozas J Sanchez-Delbarrio JC Messeguer X Rozas R 2003 dnasp, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19, 2496 2497.
47. Sakai AK Allendorf FW Holt JS et al. 2001 The population biology of invasive species. Annual Review of Ecological Systematics, 32, 305 332.
48. Schneider S Roessli D Excoffier L 2000 arlequin version 2.000: A software for population genetics data analysis. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Geneva, Switzerland.
49. Seufert P Fiedler K 1996 Life-history diversity and local co-existence of three closely related lycaenid butterflies (Lepidoptera: Lycaenidae) in Malaysian rainforests. Zoologischer Anzeiger, 234, 229 239.
50. Seymour AS Gutiérrez D Jordano D 2003 Dispersal of the lycaenid Plebejus argus in response to patches of its mutualist ant Lasius niger. Oikos, 103, 162 174.
51. Siegert F Ruecker G Hinrichs A Hoffmann AA 2001 Increased damage from fires in logged forests during droughts caused by El Nino. Nature, 414, 437 440.
52. Simon C Frati F Beckenbach A et al. 1994 Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Annals of the Entomological Society of America, 87, 651 701.
53. Slatkin M Hudson RR 1991 Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics, 129, 555 562.
54. Slik JWF Verburg RW Kessler PJA 2002 Effects of fire and selective logging on the tree species composition of lowland dipterocarp forest in East Kalimantan, Indonesia. Biodiversity and Conservation, 11, 85 98.
55. Tajima F 1983 Evolutionary relationship of DNA sequences in finite populations. Genetics, 105, 437 460.
56. Tajima F 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585 595.
57. Takami Y Koshio C Ishii M et al. 2004 Genetic diversity and structure of urban populations of Pieris butterflies assessed using amplified fragment length polymorphism. Molecular Ecology, 13, 245 258.
58. Taylor MFJ McKechnie SW Pierce N Kreitman M 1993 The lepidopteran mitochondrial control region: structure and evolution. Molecular Biology and Evolution, 10, 1259 1272.
59. Thiollay JM 1992 Influence of selective logging on bird species diversity in a Guianan rain forest. Conservation Biology, 6, 47 63.
60. Van Nieuwstadt MGL Sheil D Kartawinata K 2001 The ecological consequences of logging in the burned forests of East Kalimantan, Indonesia. Conservation Biology, 15, 1183 1186.
61. Vellend M 2003 Island biogeography of genes and species. American Naturalist, 162, 358 365.
62. Vila M Björklund M 2004 The utility of the neglected mitochondrial control region for evolutionary studies in Lepidoptera (Insecta). Journal of Molecular Evolution, 58, 280 290.
63. Whitehouse AM Harley EH 2001 Post-bottlenecked genetic diversity of elephant populations in South Africa, revealed using microsatellite analysis. Molecular Ecology, 10, 2139 2149.
64. Willott SJ Lim DC Compton SG Sutton SL 2000 Effects of selective logging on the butterflies of a Bornean rainforest. Conservation Biology, 15, 1055 1065.
65. Wright S 1931 Evolution in Mendelian populations. Genetics, 28, 114 138.
66. Zhang DX Hewitt GM 1997 Insect mitochondrial control region: a review of its structure, evolution, and usefulness in evolutionary studies. Biochemical Systematics and Ecology, 25, 99 120.