메뉴 건너뛰기




Volumn 81, Issue 2, 2006, Pages 93-101

Genetic diversity and phylogenetic relationship in AA Oryza species as revealed by Rim2/Hipa CACTA transposon display

Author keywords

Genetic diversity; Oryza species; Phylogenetic relationship; Rim2 Hipa CACTA; Transposon display

Indexed keywords

ARTICLE; CONTROLLED STUDY; DIPLOIDY; GENE AMPLIFICATION; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENOME; GEOGRAPHIC DISTRIBUTION; NONHUMAN; PHYLOGENY; PROTEIN MOTIF; RICE; TAXON; TRANSPOSON;

EID: 33744959446     PISSN: 13417568     EISSN: 13417568     Source Type: Journal    
DOI: 10.1266/ggs.81.93     Document Type: Article
Times cited : (24)

References (37)
  • 1
    • 0032766702 scopus 로고    scopus 로고
    • Phyologenetic relationships among Oryza species revealed by AFLP markers
    • Aggarwal, R. K., Brar, D. S., Nandi, S., Huang, N., and Khush, G. S. (1999) Phyologenetic relationships among Oryza species revealed by AFLP markers. Theor. Appl. Genet. 98, 1320-1328.
    • (1999) Theor. Appl. Genet. , vol.98 , pp. 1320-1328
    • Aggarwal, R.K.1    Brar, D.S.2    Nandi, S.3    Huang, N.4    Khush, G.S.5
  • 2
    • 0000303279 scopus 로고
    • Comments on the distribution of indices of diversity
    • Browman, K. D., Hutcheson, K., Odum, E. P., and Shenton, L. R. (1971) Comments on the distribution of indices of diversity. Stat. Ecol. 3, 315-359.
    • (1971) Stat. Ecol. , vol.3 , pp. 315-359
    • Browman, K.D.1    Hutcheson, K.2    Odum, E.P.3    Shenton, L.R.4
  • 3
    • 0034879552 scopus 로고    scopus 로고
    • Analysis of random and specific sequences of nuclear and cytoplasmic DNA in diploid and tetraploid American wild rice species (Oryza spp.)
    • Buso, G. S. C., Rangel, P. H. N., and Ferreira, M. E. (2001) Analysis of random and specific sequences of nuclear and cytoplasmic DNA in diploid and tetraploid American wild rice species (Oryza spp.). Genome 44, 476-494.
    • (2001) Genome , vol.44 , pp. 476-494
    • Buso, G.S.C.1    Rangel, P.H.N.2    Ferreira, M.E.3
  • 5
    • 0036814150 scopus 로고    scopus 로고
    • Evolutionary relationships among rice species with AA genome based on SINE insertion analysis
    • Cheng, C., Tsuchimoto, S., Ohstsubo, H., and Ohtsubo, E. (2002) Evolutionary relationships among rice species with AA genome based on SINE insertion analysis. Genes. Genet. Syst. 77, 323-334.
    • (2002) Genes. Genet. Syst. , vol.77 , pp. 323-334
    • Cheng, C.1    Tsuchimoto, S.2    Ohstsubo, H.3    Ohtsubo, E.4
  • 7
    • 51249186914 scopus 로고
    • A simple and rapid method for plant DNA preparation. Version II
    • Dellaporta, S. L., Wood, J., and Hicks, J. B. (1983) A simple and rapid method for plant DNA preparation. Version II. Plant Mol. Biol. Rep. 1, 19-21.
    • (1983) Plant Mol. Biol. Rep. , vol.1 , pp. 19-21
    • Dellaporta, S.L.1    Wood, J.2    Hicks, J.B.3
  • 8
    • 17444386263 scopus 로고    scopus 로고
    • Genetic structure and diversity in Oryza sativa L.
    • Garris, A. J., Tai, T. H., Coburn, J., Kresovich, S., and McCouch, S. (2005) Genetic structure and diversity in Oryza sativa L. Genetics 169, 1631-1638.
    • (2005) Genetics , vol.169 , pp. 1631-1638
    • Garris, A.J.1    Tai, T.H.2    Coburn, J.3    Kresovich, S.4    McCouch, S.5
  • 9
    • 0033452726 scopus 로고    scopus 로고
    • Phylogeny of rice genomes with emphasis on origins of allotetraploid species
    • USA
    • Ge, S., Sang, T., Lu, B. R., and Hong, D. Y. (1999) Phylogeny of rice genomes with emphasis on origins of allotetraploid species. Proc. Nat. Acad. Sci. USA 94, 6809-6814.
    • (1999) Proc. Nat. Acad. Sci. , vol.94 , pp. 6809-6814
    • Ge, S.1    Sang, T.2    Lu, B.R.3    Hong, D.Y.4
  • 10
    • 34250103509 scopus 로고
    • Isozymes and classification of Asian rice varieties
    • Glaszmann, J. C. (1987) Isozymes and classification of Asian rice varieties. Theor. Appl. Genet. 74, 21-30.
    • (1987) Theor. Appl. Genet. , vol.74 , pp. 21-30
    • Glaszmann, J.C.1
  • 11
    • 0033653519 scopus 로고    scopus 로고
    • The rice Rim2 transcript accumulates in response to Magnaporthe grisea and its predicted protein product shares similarity with TNP2-like proteins encoded by CACTA transposons
    • He, Z-H., Dong, H-T., Dong, J-X., Li, D-B., and Ronald, P. C. (2000) The rice Rim2 transcript accumulates in response to Magnaporthe grisea and its predicted protein product shares similarity with TNP2-like proteins encoded by CACTA transposons. Mol. Gen. Genet. 264, 2-10.
    • (2000) Mol. Gen. Genet. , vol.264 , pp. 2-10
    • He, Z.-H.1    Dong, H.-T.2    Dong, J.-X.3    Li, D.-B.4    Ronald, P.C.5
  • 12
    • 0034886886 scopus 로고    scopus 로고
    • Nuclear- and chloroplast microsatellite variation in A-genome species of rice
    • Ishii, T., Xu, Y., and McCouch, S. R. (2001) Nuclear- and chloroplast microsatellite variation in A-genome species of rice. Genome 44, 658-666.
    • (2001) Genome , vol.44 , pp. 658-666
    • Ishii, T.1    Xu, Y.2    McCouch, S.R.3
  • 13
    • 0033916763 scopus 로고    scopus 로고
    • Genetic diversity and phylogenetic relationship as revealed by inter simple sequence repeat (ISSR) polymorphism in the genus Oryza
    • Joshi, S. P., Gupta, V. S., Aggarwal, R. K., Ranjekar, P. K., and Brar, D. S. (2000) Genetic diversity and phylogenetic relationship as revealed by inter simple sequence repeat (ISSR) polymorphism in the genus Oryza. Theor. Appl. Genet. 100, 1311-1320.
    • (2000) Theor. Appl. Genet. , vol.100 , pp. 1311-1320
    • Joshi, S.P.1    Gupta, V.S.2    Aggarwal, R.K.3    Ranjekar, P.K.4    Brar, D.S.5
  • 14
    • 85004482953 scopus 로고
    • Cytogenetical studies on the genus Oryza. XIII. Relationship between the genomes E and D
    • Katayama, T. (1982) Cytogenetical studies on the genus Oryza. XIII. Relationship between the genomes E and D. Jpn. J. Genet. 57, 613-621.
    • (1982) Jpn. J. Genet. , vol.57 , pp. 613-621
    • Katayama, T.1
  • 15
    • 0031239092 scopus 로고    scopus 로고
    • Origin, dispersal, cultivation and variation of rice
    • Khush, G. S. (1997) Origin, dispersal, cultivation and variation of rice. Plant Mol. Biol. 35, 24-34.
    • (1997) Plant Mol. Biol. , vol.35 , pp. 24-34
    • Khush, G.S.1
  • 16
    • 24044450094 scopus 로고    scopus 로고
    • CACTA-transposon display; a new genetic marker technique in Oryza species
    • doi:10.1186/1471-2156-6-15
    • Kwon, S-J., Park, K-C., Kim, J-H., Lee, J. K., and Kim, N-S. (2005) CACTA-transposon display; A new genetic marker technique in Oryza species. BMC Genetics 6, 15 doi:10.1186/1471-2156-6-15.
    • (2005) BMC Genetics , vol.6 , pp. 15
    • Kwon, S.-J.1    Park, K.-C.2    Kim, J.-H.3    Lee, J.K.4    Kim, N.-S.5
  • 17
    • 0345095607 scopus 로고    scopus 로고
    • Evolution and domestication of rice
    • Khush GS, Brar DS, Hardy B (eds) 22-27 October 2000, International Rice Research Institute, Los Baňos, The Philippines
    • Morishima, H. (2001) Evolution and domestication of rice. In: Khush GS, Brar DS, Hardy B (eds) Rice genetics IV. Proc. 4th Int Rice Genetics Symposium, 22-27 October 2000, International Rice Research Institute, Los Baňos, The Philippines, pp 63-78.
    • (2001) Rice Genetics IV. Proc. 4th Int Rice Genetics Symposium , pp. 63-78
    • Morishima, H.1
  • 18
    • 85004442148 scopus 로고
    • A survey of genetic variations in the populations of wild Oryza species and their cultivated relatives
    • Morishima, H., and Oka, H. I. (1970) A survey of genetic variations in the populations of wild Oryza species and their cultivated relatives. Jpn. J. Genet. 45, 371-385.
    • (1970) Jpn. J. Genet. , vol.45 , pp. 371-385
    • Morishima, H.1    Oka, H.I.2
  • 19
    • 0001341775 scopus 로고
    • Mathematical model for studying genetic variation in terms of restriction endonuclease
    • USA
    • Nei, M., and Li, W. H. (1979) Mathematical model for studying genetic variation in terms of restriction endonuclease. Proc. Natl. Acad. Sci. USA 89, 1477-1481.
    • (1979) Proc. Natl. Acad. Sci. , vol.89 , pp. 1477-1481
    • Nei, M.1    Li, W.H.2
  • 20
    • 0013054959 scopus 로고
    • Origin of cultivated rice
    • Japan Scientific Societies Press, Tokyo, Japan
    • Oka, H. I. (1988) Origin of cultivated rice. In: Developments in Crop Science 14. Japan Scientific Societies Press, Tokyo, Japan.
    • (1988) Developments in Crop Science , pp. 14
    • Oka, H.I.1
  • 21
    • 0003183324 scopus 로고
    • Phylogenetic differentiation of cultivated rice. 23. Potentialty of wild progenitors to evolve the indica and japonica types of rice cultivars
    • Oka, H. I., and Morishima, H. (1982) Phylogenetic differentiation of cultivated rice. 23. Potentialty of wild progenitors to evolve the indica and japonica types of rice cultivars. Euphytica 31, 41-50.
    • (1982) Euphytica , vol.31 , pp. 41-50
    • Oka, H.I.1    Morishima, H.2
  • 22
  • 24
    • 0346038786 scopus 로고    scopus 로고
    • A comparative study of genetic relationships among AA-genome Oryza species using RAPD and SSR markers
    • Ren, F., Lu, B-R., Li, S., Huang, J., and Zhu, Y. (2003) A comparative study of genetic relationships among AA-genome Oryza species using RAPD and SSR markers. Theor. Appl. Genet. 108, 113-120.
    • (2003) Theor. Appl. Genet. , vol.108 , pp. 113-120
    • Ren, F.1    Lu, B.-R.2    Li, S.3    Huang, J.4    Zhu, Y.5
  • 26
    • 85004247016 scopus 로고
    • Origin of the genetic diversity of cultivated rice (Oryza spp. ): Study of the polymorphism scored at 40 isozyme loci
    • Second, G. (1982) Origin of the genetic diversity of cultivated rice (Oryza spp. ): study of the polymorphism scored at 40 isozyme loci. Jpn. J. Genet. 57, 25-57.
    • (1982) Jpn. J. Genet. , vol.57 , pp. 25-57
    • Second, G.1
  • 27
    • 0035121402 scopus 로고    scopus 로고
    • Comparison of the genetic diversity of common wild rice (Oryza rufipogon Griff. ) and cultivated rice (O. sativa L. ) using RFLP markers
    • Sun, C. Q., Wang, X. K., Li, Z. X., Yoshimura, A., and Iwata, N. (2001) Comparison of the genetic diversity of common wild rice (Oryza rufipogon Griff. ) and cultivated rice (O. sativa L. ) using RFLP markers. Theor. Appl. Genet. 102, 157-162.
    • (2001) Theor. Appl. Genet. , vol.102 , pp. 157-162
    • Sun, C.Q.1    Wang, X.K.2    Li, Z.X.3    Yoshimura, A.4    Iwata, N.5
  • 28
    • 0035142211 scopus 로고    scopus 로고
    • Survey of transposable elements from rice genome sequences
    • Turcotte, K., Srinivasan, S., and Bureau, T. (2001) Survey of transposable elements from rice genome sequences. Plant J. 25, 169-179.
    • (2001) Plant J. , vol.25 , pp. 169-179
    • Turcotte, K.1    Srinivasan, S.2    Bureau, T.3
  • 31
    • 34249840289 scopus 로고
    • Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs
    • Wang, Z. M., Second, G., and Tanksley, S. D. (1992) Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs. Theor. Appl. Genet. 83, 565-581.
    • (1992) Theor. Appl. Genet. , vol.83 , pp. 565-581
    • Wang, Z.M.1    Second, G.2    Tanksley, S.D.3
  • 32
    • 0345548556 scopus 로고    scopus 로고
    • Genomic characterization of Rim2/Hipa elements reveals a CACTA-like transposon superfamily with unique features in the rice genome
    • Wang, G-D., Tian, P. F., Cheng, Z-K., Wu, G., Jiang, J. M., Li, D-B., Li, Q., and He, Z. H. (2003) Genomic characterization of Rim2/Hipa elements reveals a CACTA-like transposon superfamily with unique features in the rice genome. Mol. Gen. Genomics 270, 234-242.
    • (2003) Mol. Gen. Genomics , vol.270 , pp. 234-242
    • Wang, G.-D.1    Tian, P.F.2    Cheng, Z.-K.3    Wu, G.4    Jiang, J.M.5    Li, D.-B.6    Li, Q.7    He, Z.H.8
  • 33
    • 0008976760 scopus 로고    scopus 로고
    • Miniature inverted-repeat transposable elements help to create diversity in maize and rice
    • Khush GS, Brar DS, Hardy B (eds) 22-27 October 2000, International Rice Research Institute, Los Baňos, The Philippines
    • th Int Rice Genetics Symposium, 22-27 October 2000, International Rice Research Institute, Los Baňos, The Philippines.
    • (2001) th Int Rice Genetics Symposium
    • Wessler, S.R.1    Nagel, A.2    Casa, A.3
  • 34
    • 0038363536 scopus 로고    scopus 로고
    • CACTA transposons in Triticeae. A diverse family of high-copy repetitive elements
    • Wicker, T., Guyot, R., Yahiaouri, N., and Keller, B. (2003) CACTA transposons in Triticeae. A diverse family of high-copy repetitive elements. Plant Physiol. 132, 52-63.
    • (2003) Plant Physiol. , vol.132 , pp. 52-63
    • Wicker, T.1    Guyot, R.2    Yahiaouri, N.3    Keller, B.4
  • 35
    • 0003581979 scopus 로고    scopus 로고
    • WINBOOT: A program for performing bootstrap analysis of binary data to determine the confidence limits of UPGMA-based dendrograms
    • Yap, I. V., and Nelson, R. J. (1996) WINBOOT: a program for performing bootstrap analysis of binary data to determine the confidence limits of UPGMA-based dendrograms. International Rice Reseaarch Institute (IRRI) Discussion Paper Series No. 14.
    • (1996) International Rice Reseaarch Institute (IRRI) Discussion Paper Series No. 14
    • Yap, I.V.1    Nelson, R.J.2
  • 37
    • 21244501403 scopus 로고    scopus 로고
    • Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes
    • Zhu, Q., and Ge, S. (2005b) Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes. New Phyt. 167, 249-265.
    • (2005) New Phyt. , vol.167 , pp. 249-265
    • Zhu, Q.1    Ge, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.