Isolation of major histocompatibility complex Class I genes from the tammar wallaby (Macropus eugenii)

Immunogenetics

Volumn 58, Issue 5-6, 2006, Pages 487-493

  Siddle, Hannah V ^a   Deakin, Janine E ^b   Baker, Michelle L ^c   Miller, Robert D ^c   Belov, Katherine ^a  

^a UNIVERSITY OF SYDNEY   (Australia)

^b AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

^c UNIVERSITY OF NEW MEXICO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; GENOMIC DNA; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 1;

ANIMAL TISSUE; ARTICLE; DNA LIBRARY; GENE ISOLATION; GENE LOCUS; MAJOR HISTOCOMPATIBILITY COMPLEX; MALE; MARSUPIAL; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PRIORITY JOURNAL; SPLEEN; TAMMAR WALLABY; TESTIS;

AMINO ACID SEQUENCE; ANIMALS; GENES, MHC CLASS I; HISTOCOMPATIBILITY ANTIGENS CLASS I; MACROPODIDAE; MOLECULAR SEQUENCE DATA; PHYLOGENY;

MACROPUS EUGENII; MACROPUS RUFOGRISEUS; MAMMALIA; METATHERIA; VERTEBRATA;

EID: 33744829018     PISSN: 00937711     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00251-006-0107-4     Document Type: Article

References (38)

1. Baker M, Osterman A, Brumburgh S (2005) Divergent T cell receptor delta chains from marsupials. Immunogenetics 57:665-673
2. Belov K, Deakin J, Papenfuss AT, Baker M, Melman S, Siddle H, Gouin N, Goode D, Sarageant T, Robinson M, Wakefield M, Mahony S, Cross J, Benos P, Samollow P, Speed T, Graves JM, Miller R (2006) Reconstructing an ancestral mammalian immune supercomplex from a marsupial MHC. PLoS Biol 4:e46
3. Belov K, Hellman L, Cooper D (2002) Characterization of echidna IgM provides insights into the time of divergence of extant mammals. Dev Comp Immunol 26:831-839
4. Belov K, Lam M, Hellman L, Colgan D (2003) Evolution of the major histocompatibility complex: isolation of class II B cDNAs from two monotremes, the platypus and the short-beaked echidna. Immunogenetics 55:402-411
5. Bjorkman P, Parham P (1990) Structure, function and diversity of class I major histocompatibility molecules. Ann Rev Biochem 59:253-288
6. Bjorkman P, Saper M, Samraoui B, Bennett W, Strominger J, Wiley D (1987) The foreign antigen binding site and T cell recognition regions of class I histocompatibility antigens. Nature 329:512-518
7. Browning T, Belov K, Miller R, Eldridge M (2004) Molecular cloning and characterization of the polymorphic MHC class II DBB from the tammar wallaby (Macropus eugenii). Immunogenetics 55:791-795
8. Guild B, Strominger J (1984) Human and murine class I antigens share conserved serine-335, the site of HLA phosphorylation in vivo. J Biol Chem 259:9235-9240
9. Hinds L, Poole WE, -Biscoe CHT, VanOorschot RA, Cooper DW (1990) Reproductive biology and the potential for genetic studies in the tammar wallaby, Macropus eugenii. Aust J Zool 37:223-234
10. Houlden B, Greville W, Sherwin W (1996) Evolution of MHC class I loci in marsupials: characterization of sequences from Koala (Phascolarctos cinerus). Mol Biol Evol 13:1119-1127
11. Hughes A, Nei M (1989) Evolution of the major histocompatibility complex: independant origin of nonclassical Class I genes in different groups of mammals. Mol Biol Evol 6:559-579
12. Joyce S, Tabaczewski P, Angeletti R, Nathenson S, Stroynowski I (1994) A non-polymorphic MHC class Ib molecule binds a large array of diverse self peptides. J Exp Med 179:579-588
13. Kelly J, Walter L, Trowsdale J (2005) Comparative genomics of major histocompatibility complexes. Immunogenetics 56:683-695
14. Kovats S, Main E, Librach C, Stubblebine M, Fisher S, DeMars R (1990) A class I antigen, HLA-G, expressed in the human trophoblasts. Science 248:220-223
15. Kulski J, Shiina T, Anzai T, Kohara S, Inoko H (2002) Comparative genomic analysis of the MHC: the evolution of class I duplication blocks, diversity and complexity from shark to man. Immunol Rev 190:95-122
16. Kumanovics A, Takada T, Lindahl K (2003) Genomic organization of the mammalian MHC. Annu Rev Immunol 21:629-657
17. Kumar S, Tamura K, Nei M (2004) MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignments. Brief Bioinform 5:150-163
18. Lam MK-P, Belov K, Harrison G, Cooper D (2001) An MHC class I gene in the Australian brushtail possum (Trichosurus vulpecula). Immunogenetics 53:430-433
19. Lawlor D, Ward F, Ennis P, Jackson A, Parham P (1988) HLA-A and B polymorphisms predate the divergence of humans and chimpanzees. Nature 335:268-271
20. Lindahl K, Byers D, Dabhi V, Hovik R, Jones E, Smith G, Wang C, Xiao H, Yoshino M (1997) H2-M3, a full service class IB histocompatibility antigen. Annu Rev Immunol 15:851-879
21. Mayer W, Williams N, O'hUigin C, Vincek V, Zaleska-Rutczynska Z, Klein J (1993) Class I major histocompatibility complex genes of the red-necked wallaby, Macropus rufogriseus. Mol Phylogenet Evol 2:23-30
22. Miska K, Wright AM, Lundgren R, Sasaki-McClees R, Osterman A, Gale J, Miller R (2004) Analysis of a marsupial MHC region containing two recently duplicated class I loci. Mamm Genome 15:851-864
23. Miska K, Harrison G, Hellman L, Millar R (2002) The major histocompatibility complex in monotremes: an analysis of the evolution of the MHC class I genes across all three mammalian subclasses. Immunogenetics 54:381-393
24. Miska K, Miller R (1999) Marspial MHC class I: classical sequences from the opossum Monodelphis domestica. Immunogenetics 50:89-93
25. Nei M, Gu X, Sitnikova T (1997) Evolution by the birth and death process in multigene families of the vertebrate immune system. Proc Natl Acad Sci USA 94:7799-7806
26. Renard C, Vaiman M, Chiannilkulchai N, Cattolico L, Robert C et al (2001) Sequence of the pig major histocompatibility region containing the classical class I genes. Immunogenetics 53:490-500
27. Rotzschke O, Falk K, Stefanovic S, Grahovac B, Soloski M, Jung G, Rammensee H (1993) Qa-2 molecules are peptide receptors of higher stringency than ordinary class I molecules. Nature 361:642-644
28. Saitou N, Nei M (1987) The neighbour-joining method: a new method for constructing phylogenetic trees. Mol Biol Evol 4:406-425
29. Salter R, Benjamin R, Wesley P, Buxton S, Garret S, Clayberger C, Krensky A, Morment A, Littman D, Parham P (1990) A binding site for the T cell co-receptor CD8 on the alpha3 domain of HLA-A2. Nature 345:41-46
30. Shiina T, Tamiya G, Oka A, Takishima N, Yamagata T (1999) Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1 796 938-bp HLA class I region. Proc Natl Acad Sci USA 96:13282-13287
31. Slade R, Hale P, Francis D, Graves JM, Sturm R (1994) The Marsupial MHC: the tammar wallaby, Macropus eugenii, contains an expressed DNA-like gene on chromosome 1. J Mol Evol 38:496-505
32. Springer M, Kirsch J, Aplin K, Flannery T (1990) DNA hybridization, cladistics, and the phylogeny of phalangerid marsupials. J Mol Evol 30:298-311
33. Stroynowski I, Soloski M, Low M, Hood L (1987) A single gene encodes soluble and membrane-bound forms of the major histocompatibility Qa-2 antigen: anchoring of the product by a phospholipid tail. Cell 50:759-768
34. Thompson J, Higgins D, Gibson T (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
35. Tyndale-Biscoe C, Jansens P (1988) The developing marsupial: models for biochemical research. Springer, Berlin Heidelberg New York
36. Ulker N, Lewis K, Hood L, Stoynowski I (1990) Activated T-cless transcribe an alternatively spliced messenger-RNA encoding a soluble form of Qa-2 antigen. EMBO J 9:3839-3847
37. Villadangos JA, Galocha B, Lopez D, Calvo V, Castro JLD (1992) Role of binding pockets for amino-terminal peptide residues in HLA-B27 allorecognition. J Immunol 149:505-510
38. Woodburne M, Rich T, Springer M (2003) The evolution of tribospheny and the antiquity of mammalian clades. Mol Phylogenet Evol 28:360-385