메뉴 건너뛰기




Volumn 165, Issue 6, 2006, Pages 745-748

Some statistical issues in microarray gene expression data

Author keywords

[No Author keywords available]

Indexed keywords

DNA MICROARRAY; GENE EXPRESSION; MICROARRAY ANALYSIS; PRIORITY JOURNAL; RADIATION EXPOSURE; RADIOFREQUENCY; REVIEW;

EID: 33744814087     PISSN: 00337587     EISSN: None     Source Type: Journal    
DOI: 10.1667/RR3576.1     Document Type: Review
Times cited : (9)

References (29)
  • 3
    • 0036330062 scopus 로고    scopus 로고
    • Primer on medical genomics part I: History of genetics and sequencing of the human genome
    • C. P. Lorentz, E. D. Wieben, A. Tefferi, D. A. Whiteman and G. W. Dewald, Primer on medical genomics part I: History of genetics and sequencing of the human genome. Mayo Clin. Proc. 77, 773-782 (2002).
    • (2002) Mayo Clin. Proc. , vol.77 , pp. 773-782
    • Lorentz, C.P.1    Wieben, E.D.2    Tefferi, A.3    Whiteman, D.A.4    Dewald, G.W.5
  • 4
    • 0037214995 scopus 로고    scopus 로고
    • Primer on medical genomics Part V: Bioinformatics
    • P. L. Elkin, Primer on medical genomics Part V: Bioinformatics. Mayo Clinic Proc. 78, 57-64 (2003).
    • (2003) Mayo Clinic Proc. , vol.78 , pp. 57-64
    • Elkin, P.L.1
  • 8
    • 17744413236 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application
    • RESEARCH0032
    • C. Li and W Hung Wong, Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application. Genome Biol. 2, RESEARCH0032 (2001).
    • (2001) Genome Biol. , vol.2
    • Li, C.1    Hung Wong, W.2
  • 11
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • Y. H. Yang, S. Dudoit, P. Luu, D. M. Lin, V. Peng, J. Ngai and T. P. Speed, Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res. 30, 1-10 (2002).
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1-10
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5    Ngai, J.6    Speed, T.P.7
  • 12
    • 0034927555 scopus 로고    scopus 로고
    • Analysis of variance for gene expression microarray data
    • M. K. Kerr, M. Martin and G. A. Churchill, Analysis of variance for gene expression microarray data. J. Computat. Biol. 7, 819-837 (2000).
    • (2000) J. Computat. Biol. , vol.7 , pp. 819-837
    • Kerr, M.K.1    Martin, M.2    Churchill, G.A.3
  • 14
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • J. D. Storey and R. Tibshirani, Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. USA 100, 9440-9445 (2003).
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 15
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • G. V. Tusher, R. Tibshirani and G. Chu, Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. USA 98, 5116-5121 (2001).
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 5116-5121
    • Tusher, G.V.1    Tibshirani, R.2    Chu, G.3
  • 17
    • 0034923013 scopus 로고    scopus 로고
    • On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data
    • M. A. Newton, C. M. Kendziorski, C. S. Richmond, F. R. Blattner and K. W. Tsui, On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data. J. Comput. Biol. 8, 37-52 (2001).
    • (2001) J. Comput. Biol. , vol.8 , pp. 37-52
    • Newton, M.A.1    Kendziorski, C.M.2    Richmond, C.S.3    Blattner, F.R.4    Tsui, K.W.5
  • 18
    • 0038156106 scopus 로고    scopus 로고
    • Estimating the occurrence of false positives and false negatives in microarray studies by approximating and partitioning the empirical distribution of p-values
    • S. Pounds and S. W. Morris, Estimating the occurrence of false positives and false negatives in microarray studies by approximating and partitioning the empirical distribution of p-values. Bioinformatics 19, 1236-1242 (2003).
    • (2003) Bioinformatics , vol.19 , pp. 1236-1242
    • Pounds, S.1    Morris, S.W.2
  • 19
    • 4444294164 scopus 로고    scopus 로고
    • Improving false discovery rate estimation
    • S. Pounds and C. Cheng, Improving false discovery rate estimation. Bioinformatics 20, 1737-1745 (2004).
    • (2004) Bioinformatics , vol.20 , pp. 1737-1745
    • Pounds, S.1    Cheng, C.2
  • 20
    • 28444492997 scopus 로고    scopus 로고
    • Sample size determination for the false discovery rate
    • S. Pounds and C. Cheng, Sample size determination for the false discovery rate. Bioinformatics 21, 4263-4271 (2005).
    • (2005) Bioinformatics , vol.21 , pp. 4263-4271
    • Pounds, S.1    Cheng, C.2
  • 21
    • 0036433548 scopus 로고    scopus 로고
    • A statistical framework for expression-based molecular classification in cancer
    • G. Parmigiani, E. S. Garrett, R. Anbazhagan and E. Gabrielson, A statistical framework for expression-based molecular classification in cancer. J. Royal Stat. Soc. 64, 717-736 (2002).
    • (2002) J. Royal Stat. Soc. , vol.64 , pp. 717-736
    • Parmigiani, G.1    Garrett, E.S.2    Anbazhagan, R.3    Gabrielson, E.4
  • 22
    • 0345822598 scopus 로고    scopus 로고
    • The positive false discovery rate: A Bayesian interpretation and the q-value
    • J. D. Storey, The positive false discovery rate: A Bayesian interpretation and the q-value. Ann. Stat. 31, 2013-2035 (2003).
    • (2003) Ann. Stat. , vol.31 , pp. 2013-2035
    • Storey, J.D.1
  • 23
    • 10844254626 scopus 로고    scopus 로고
    • Optimal sample size for multiple testing: The case of gene expression microarrays
    • P. Muller, G. Parmigiani, C. P. Robert and J. Rousseau, Optimal sample size for multiple testing: The case of gene expression microarrays. J. Am. Stat. Assoc. 99, 990-1001 (2004).
    • (2004) J. Am. Stat. Assoc. , vol.99 , pp. 990-1001
    • Muller, P.1    Parmigiani, G.2    Robert, C.P.3    Rousseau, J.4
  • 24
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery rate in multiple testing under dependency
    • Y. Benjamini and D. Yekutieli, The control of the false discovery rate in multiple testing under dependency. Ann. Stat. 29, 1165-1188 (2001).
    • (2001) Ann. Stat. , vol.29 , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2
  • 26
    • 0036376993 scopus 로고    scopus 로고
    • Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiment
    • S. Dudoit, Y. H. Yang, M. J. Callow and T. S. Speed, Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiment. Stat. Sin. 12, 111-139 (2002).
    • (2002) Stat. Sin. , vol.12 , pp. 111-139
    • Dudoit, S.1    Yang, Y.H.2    Callow, M.J.3    Speed, T.S.4
  • 28
    • 13244258381 scopus 로고    scopus 로고
    • Iterative class discovery and feature selection using Minimal spanning trees
    • S. Varma and R. Simon, Iterative class discovery and feature selection using Minimal spanning trees. BMC Bioinformatics 5, 126 (2004).
    • (2004) BMC Bioinformatics , vol.5 , pp. 126
    • Varma, S.1    Simon, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.