-
2
-
-
0028063090
-
Analysis and classification of disulphide connectivity in proteins
-
Harrison PM, Sternberg MJE. Analysis and classification of disulphide connectivity in proteins. J Mol Biol 1994;244:448-463.
-
(1994)
J Mol Biol
, vol.244
, pp. 448-463
-
-
Harrison, P.M.1
Sternberg, M.J.E.2
-
3
-
-
0033516514
-
Ab initio fold prediction of small helical proteins using distance geometry and knowledge-based scoring functions
-
Huang ES, Samudrala R, Ponder JW. Ab initio fold prediction of small helical proteins using distance geometry and knowledge-based scoring functions. J Mol Biol 1999;290:267-281.
-
(1999)
J Mol Biol
, vol.290
, pp. 267-281
-
-
Huang, E.S.1
Samudrala, R.2
Ponder, J.W.3
-
4
-
-
0026579140
-
Different sequence environment of cysteines and half cysteines in proteins: Application to predict disulfide forming residues
-
Fiser A, Cserzô M, Tüdôs E, Simon I. Different sequence environment of cysteines and half cysteines in proteins: application to predict disulfide forming residues. FEBS Lett 1992;302:117-120.
-
(1992)
FEBS Lett
, vol.302
, pp. 117-120
-
-
Fiser, A.1
Cserzô, M.2
Tüdôs, E.3
Simon, I.4
-
5
-
-
0025118064
-
Prediction of the disulfide-bonding state of cysteine in proteins
-
Muskal SM, Holbrook SR, Kim SH. Prediction of the disulfide-bonding state of cysteine in proteins. Protein Eng 1990;3:667-672.
-
(1990)
Protein Eng
, vol.3
, pp. 667-672
-
-
Muskal, S.M.1
Holbrook, S.R.2
Kim, S.H.3
-
6
-
-
0033566578
-
Role of evolutionary information in predicting the disulfide-bonding state of cysteine in proteins
-
Fariselli P, Riccobelli P, Casadio R. Role of evolutionary information in predicting the disulfide-bonding state of cysteine in proteins. Proteins Struct Funct Genet 1999;36:340-346.
-
(1999)
Proteins Struct Funct Genet
, vol.36
, pp. 340-346
-
-
Fariselli, P.1
Riccobelli, P.2
Casadio, R.3
-
7
-
-
0034039497
-
Predicting the oxidation state of cysteines by multiple sequence alignment
-
Fiser A, Simon I. Predicting the oxidation state of cysteines by multiple sequence alignment. Bioinformatics 2000;16:251-256.
-
(2000)
Bioinformatics
, vol.16
, pp. 251-256
-
-
Fiser, A.1
Simon, I.2
-
8
-
-
0036839271
-
Prediction of the disulfide-binding state of cysteines in proteins at 88% accuracy
-
Martelli PL, Fariselli P, Malaguti L, Casadio R. Prediction of the disulfide-binding state of cysteines in proteins at 88% accuracy. Protein Sci 2002;11:2735-2739.
-
(2002)
Protein Sci
, vol.11
, pp. 2735-2739
-
-
Martelli, P.L.1
Fariselli, P.2
Malaguti, L.3
Casadio, R.4
-
10
-
-
2542586190
-
Prediction of the bonding states of cysteines using the support vector machines based on multiple feature vectors and cysteine state sequences
-
Chen Y-C, Lin Y-S, Lin C-J, Hwang J-K. Prediction of the bonding states of cysteines using the support vector machines based on multiple feature vectors and cysteine state sequences. Proteins 2004;55:1036-1042.
-
(2004)
Proteins
, vol.55
, pp. 1036-1042
-
-
Chen, Y.-C.1
Lin, Y.-S.2
Lin, C.-J.3
Hwang, J.-K.4
-
11
-
-
0034781580
-
Prediction of disulfide connectivity in proteins
-
Fariselli P, Casadio R. Prediction of disulfide connectivity in proteins. Bioinformatics 2001;17:957-964.
-
(2001)
Bioinformatics
, vol.17
, pp. 957-964
-
-
Fariselli, P.1
Casadio, R.2
-
13
-
-
1842455284
-
Disulfide connectivity prediction using recursive neural networks and evolutionary information
-
Vullo A, Frasconi P. Disulfide connectivity prediction using recursive neural networks and evolutionary information. Bioinformatics 2004;20:653-659.
-
(2004)
Bioinformatics
, vol.20
, pp. 653-659
-
-
Vullo, A.1
Frasconi, P.2
-
14
-
-
17444411155
-
Cysteine separations profiles on protein sequences infer disulfide connectivity
-
Zhao E, Liu H-L, Tsai C-H, Tsai H-K, Chen C-H, Kao C-Y. Cysteine separations profiles on protein sequences infer disulfide connectivity. Bioinformatics 2005;21:1415-1420.
-
(2005)
Bioinformatics
, vol.21
, pp. 1415-1420
-
-
Zhao, E.1
Liu, H.-L.2
Tsai, C.-H.3
Tsai, H.-K.4
Chen, C.-H.5
Kao, C.-Y.6
-
15
-
-
84898931668
-
Large-scale prediction of disulphide bond connectivity
-
Saul LK, Weiss Y, Bottou L, editors. Cambridge, MA: MIT Press
-
Baldi P, Cheng J, Vullo A. Large-scale prediction of disulphide bond connectivity. In: Saul LK, Weiss Y, Bottou L, editors. Advances in neural information processing systems 17. Cambridge, MA: MIT Press; 2005. p 97-104.
-
(2005)
Advances in Neural Information Processing Systems 17
, pp. 97-104
-
-
Baldi, P.1
Cheng, J.2
Vullo, A.3
-
16
-
-
19544393195
-
Disulfide connectivity prediction using secondary structure information and diresidue frequencies
-
Ferrè F, Clote P. Disulfide connectivity prediction using secondary structure information and diresidue frequencies. Bioinformatics 2005;21:2336-2346.
-
(2005)
Bioinformatics
, vol.21
, pp. 2336-2346
-
-
Ferrè, F.1
Clote, P.2
-
18
-
-
28944438120
-
Improving disulfide connectivity prediction with sequential distance between oxidized cysteines
-
Tsai C-H, Chen B-J, Chan C-h, Liu H-L, Kao C-Y. Improving disulfide connectivity prediction with sequential distance between oxidized cysteines. Bioinformatics 2005;21:4416-4419.
-
(2005)
Bioinformatics
, vol.21
, pp. 4416-4419
-
-
Tsai, C.-H.1
Chen, B.-J.2
Chan, C.-H.3
Liu, H.-L.4
Kao, C.-Y.5
-
19
-
-
0033957834
-
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
-
Bairoch A, Apweiler R. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res 2000;28:45-48.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 45-48
-
-
Bairoch, A.1
Apweiler, R.2
-
20
-
-
0003243224
-
Probabilistic outputs for support vector machines and comparison to regularized likelihood methods
-
Smola AJ, Bartlett PL, Schölkopf B, Schuurmans D, editors. Cambridge, MA: MIT Press
-
Platt J. Probabilistic outputs for support vector machines and comparison to regularized likelihood methods. In: Smola AJ, Bartlett PL, Schölkopf B, Schuurmans D, editors. Advances in Large Margin Classifiers. Cambridge, MA: MIT Press. 2000.
-
(2000)
Advances in Large Margin Classifiers
-
-
Platt, J.1
-
21
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997;25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
22
-
-
0346493041
-
A novel database of disulfide patterns and its application to the discovery of distantly related homologs
-
Vlijmen HWTv, Gupta A, Narasimhan LS, Singh J. A novel database of disulfide patterns and its application to the discovery of distantly related homologs. J Mol Biol 2004;335:1083-1092.
-
(2004)
J Mol Biol
, vol.335
, pp. 1083-1092
-
-
Vlijmen, H.1
Gupta, A.2
Narasimhan, L.S.3
Singh, J.4
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