-
1
-
-
0034697986
-
What can disulfide bonds tell us about protein energetics, function and folding: Simulations and bioinformatics analysis
-
Abkevich, V.I. and Shakhnovich, E.I. 2000. What can disulfide bonds tell us about protein energetics, function and folding: Simulations and bioinformatics analysis. J. Mol. Biol. 300: 975-985.
-
(2000)
J. Mol. Biol.
, vol.300
, pp. 975-985
-
-
Abkevich, V.I.1
Shakhnovich, E.I.2
-
2
-
-
0034491013
-
The effects of disulfide bonds on the denatured state of barnase
-
Clarke, J., Hounslow, A.M., Bond, C.J., Fersht, A.R., and Daggett, V. 2000. The effects of disulfide bonds on the denatured state of barnase. Protein Sci. 9: 2394-2404.
-
(2000)
Protein Sci.
, vol.9
, pp. 2394-2404
-
-
Clarke, J.1
Hounslow, A.M.2
Bond, C.J.3
Fersht, A.R.4
Daggett, V.5
-
3
-
-
0003516147
-
-
Cambridge University Press, Cambridge, UK
-
Durbin, R., Eddy, S., Krogh, A. and Mitchinson, G. 1998. Biological sequence analysis: Probabilistic models of proteins and nucleic acids. Cambridge University Press, Cambridge, UK.
-
(1998)
Biological sequence analysis: Probabilistic models of proteins and nucleic acids
-
-
Durbin, R.1
Eddy, S.2
Krogh, A.3
Mitchinson, G.4
-
4
-
-
0034781580
-
Prediction of disulfide connectivity in proteins
-
Fariselli, P. and Casadio, R. 2001. Prediction of disulfide connectivity in proteins. Bioinformatics 17: 957-964.
-
(2001)
Bioinformatics
, vol.17
, pp. 957-964
-
-
Fariselli, P.1
Casadio, R.2
-
5
-
-
0033566578
-
The role of evolutionary information in predicting the disulfide bonding state of cysteines in proteins
-
Fariselli, P., Riccobelli, P., and Casadio, R. 1999. The role of evolutionary information in predicting the disulfide bonding state of cysteines in proteins. Proteins 36: 340-346.
-
(1999)
Proteins
, vol.36
, pp. 340-346
-
-
Fariselli, P.1
Riccobelli, P.2
Casadio, R.3
-
6
-
-
0034039497
-
Predicting the oxidation state of cysteines by multiple sequence alignment
-
Fiser, A. and Simon, I. 2000. Predicting the oxidation state of cysteines by multiple sequence alignment. Bioinformatics 6: 251-256.
-
(2000)
Bioinformatics
, vol.6
, pp. 251-256
-
-
Fiser, A.1
Simon, I.2
-
7
-
-
0026579140
-
Different sequence environments of cysteines and half cystines in proteins: Application to predict disulfide forming residues
-
Fiser, A., Cserzo, M., Tudos, E., and Simon, I. 1992. Different sequence environments of cysteines and half cystines in proteins: Application to predict disulfide forming residues. FEBS Lett. 302: 117-120.
-
(1992)
FEBS Lett.
, vol.302
, pp. 117-120
-
-
Fiser, A.1
Cserzo, M.2
Tudos, E.3
Simon, I.4
-
8
-
-
0028063090
-
Analysis and classification of disulfide connectivity in proteins
-
Harrison, P.M. and Sternberg, M.J.E. 1994. Analysis and classification of disulfide connectivity in proteins. J. Mol. Biol. 244: 448-463.
-
(1994)
J. Mol. Biol.
, vol.244
, pp. 448-463
-
-
Harrison, P.M.1
Sternberg, M.J.E.2
-
9
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W. and Sander, C. 1983. Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22: 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
10
-
-
0033556867
-
Hidden neural networks
-
Krogh, A. and Riis, S.K. 1999. Hidden neural networks. Neural Comput. 11: 541-563.
-
(1999)
Neural Comput.
, vol.11
, pp. 541-563
-
-
Krogh, A.1
Riis, S.K.2
-
11
-
-
4243671284
-
A sequence-profile-based HMM for predicting and discriminating β-barrel membrane proteins
-
Martelli, P.L., Fariselli, P., Krogh, A., and Casadio, R. 2002. A sequence-profile-based HMM for predicting and discriminating β-barrel membrane proteins. Bioinformatics 18 (Suppl.1): S46-S53.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Martelli, P.L.1
Fariselli, P.2
Krogh, A.3
Casadio, R.4
-
12
-
-
0037083493
-
Predicting the disulfide bonding state of cysteines using protein descriptors
-
Mucchielli-Giorgi, M.H., Hazout, S., and Tuffery, P. 2002. Predicting the disulfide bonding state of cysteines using protein descriptors. Proteins 46: 243-249.
-
(2002)
Proteins
, vol.46
, pp. 243-249
-
-
Mucchielli-Giorgi, M.H.1
Hazout, S.2
Tuffery, P.3
-
13
-
-
0025118064
-
Prediction of the disulfide-bonding state of cysteine in proteins
-
Muskal, S.M., Holbrook, R.S., and Kim, S.H. 1990. Prediction of the disulfide-bonding state of cysteine in proteins. Protein Eng. 3: 667-672.
-
(1990)
Protein Eng.
, vol.3
, pp. 667-672
-
-
Muskal, S.M.1
Holbrook, R.S.2
Kim, S.H.3
-
14
-
-
0033711143
-
Oxidative folding of proteins
-
Narayan, M., Welker, E., Wedemeyer, W.J., and Scheraga, H.A. 2000. Oxidative folding of proteins. Acc. Chem. Res. 33: 805-812.
-
(2000)
Acc. Chem. Res.
, vol.33
, pp. 805-812
-
-
Narayan, M.1
Welker, E.2
Wedemeyer, W.J.3
Scheraga, H.A.4
-
15
-
-
0035172128
-
PDB-REPRDB: A database of representative protein chains from the Protein Data Bank (PDB)
-
Noguchi, T., Matsuda, T.H., and Akiyama, Y. 2001. PDB-REPRDB: A database of representative protein chains from the Protein Data Bank (PDB). Nucleic Acids Res. 29: 219-220.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 219-220
-
-
Noguchi, T.1
Matsuda, T.H.2
Akiyama, Y.3
-
16
-
-
0031575423
-
MONSSTER: A method for folding globular proteins with a small number of distance restraints
-
Skolnick, J., Kolinski, A., and Ortiz, A.R. 1997. MONSSTER: A method for folding globular proteins with a small number of distance restraints. J. Mol. Biol. 265: 217-241.
-
(1997)
J. Mol. Biol.
, vol.265
, pp. 217-241
-
-
Skolnick, J.1
Kolinski, A.2
Ortiz, A.R.3
-
17
-
-
0040786272
-
Disulfide bonds and protein folding
-
Wedemeyer, W.J., Welkler, E., Narayan, M., and Scheraga, H.A. 2000. Disulfide bonds and protein folding. Biochemistry 39: 4207-4216.
-
(2000)
Biochemistry
, vol.39
, pp. 4207-4216
-
-
Wedemeyer, W.J.1
Welkler, E.2
Narayan, M.3
Scheraga, H.A.4
-
18
-
-
0035956980
-
Structural determinants of oxidative folding in proteins
-
Welker, E., Narayan, M., Wedemeyer, W.J., and Scheraga, H.A. 2001. Structural determinants of oxidative folding in proteins. Proc. Natl. Acad. Sci. 98: 2312-2316.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 2312-2316
-
-
Welker, E.1
Narayan, M.2
Wedemeyer, W.J.3
Scheraga, H.A.4
|