Sandarakinotalea sediminis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae

International Journal of Systematic and Evolutionary Microbiology

Volumn 56, Issue 5, 2006, Pages 959-963

  Khan, Shams Tabrez ^a   Nakagawa, Yasuyoshi ^a   Harayama, Shigeaki ^a  

^a NATIONAL INSTITUTE OF TECHNOLOGY AND EVALUATION   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; GELATIN; RNA 16S; STARCH;

AEROBIC BACTERIUM; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CITY; COLOR; CONTROLLED STUDY; DEGRADATION; DNA DEGRADATION; FAMILIA; FLAVOBACTERIACEAE; GENETIC ASSOCIATION; GRAM NEGATIVE BACTERIUM; INCUBATION TEMPERATURE; JAPAN; LIPID COMPOSITION; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PACIFIC OCEAN; PRIORITY JOURNAL; RNA SEQUENCE; SANDARAKINOTALEA SEDIMINIS; SEASHORE; SEDIMENT; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; TYPE STRAIN;

BASE COMPOSITION; DNA; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FLAVOBACTERIACEAE; GELATIN; GENES, RRNA; GEOLOGIC SEDIMENTS; JAPAN; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PACIFIC OCEAN; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; STARCH; WATER MICROBIOLOGY;

BACTERIA (MICROORGANISMS); FLAVOBACTERIACEAE; NEGIBACTERIA;

EID: 33744762451     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64055-0     Document Type: Article

References (23)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Bowman, J. P., McCammon, S. A., Lewis, T., Skerrat, J. H., Brown, J. L., Nichols, D. S. & McMeekin, T. A. (1998). Psychroflexus torquis gen. nov., sp. nov., a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense (Dobson et al. 1993) as Psychroflexus gondwanense gen. nov., comb. nov. Microbiology 144, 1601-1609.
3. Brosius, J., Palmer, M. L., Kennedy, P. J. & Noller, H. F. (1978). Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci U S A 75, 4801-4805.
4. Cowan, S. T. & Steel, K. J. (1993). Manual for the Identification of Medical Bacteria, 3rd edn. London: Cambridge University Press.
5. Dobson, S. J., Colwell, R. R., Franzmann, P. D. & McMeekin, T. A. (1993). Direct sequencing of the polymerase chain reaction-amplified 16S rRNA gene of Flavobacterium gondwanense sp. nov. and Flavobacterium salegens sp. nov., two new species from a hypersaline Antarctic lake. Int J Syst Bacteriol 43, 77-83.
6. Donachie, S. P., Bowman, J. P. & Alam, M. (2004). Psychroflexus tropicus sp. nov., an obligately halophilic Cytophaga-Flavobacterium-Bacteroides group bacterium from an Hawaiian hypersaline lake. Int J Syst Evol Microbiol 54, 935-940.
7. Ezaki, T., Hashimoto, Y. & Yabuuchi, E (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
8. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
9. McCammon, S. A. & Bowman, J. P. (2000). Taxonomy of Antarctic Flavobacterium species: description of Flavobacterium gillisiae sp. nov., Flavobacterium tegetincola sp. nov., and Flavobacterium xanthum sp., nov., nom. rev. and reclassification of [Flavobacterium] salegens as Salegentibacter salegens gen. nov., comb. nov. Int J Syst Evol Microbiol 50,1055-1063.
10. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
11. Minamisawa, K. (1990). Division of rhizobitoxine-producing and hydrogen-uptake positive strains of Bradyrhizobium japonicum by nifDKE sequence divergence. Plant Cell Physiol 31, 81-89.
12. Nakagawa, Y. & Yamasato, K. (1993). Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis. J Gen Microbiol 139, 1155-1161.
13. Nedashkovskaya, O. I., Kim, S. B., Han, S. K. & 7 other authors (2003). Mesonia algae gen. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from the green alga Acrosiphonia soneri (Kütz) Kornm. Int J Syst Evol Microbiol 53, 1967-1971.
14. Nedashkovskaya, O. I., Kim, S. B., Han, S. K. & 7 other authors (2004). Algibacter lectus gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from green algae. Int J Syst Evol Microbiol 54, 1257-1261.
15. Nedashkovskaya, O. I, Kim, S. B., Lysenko, A. M., Frolova, G. M., Mikhailov, V. V., Lee, K H. & Bae, S. K. (2005a). Description of Aquimarina muelleri gen. nov., sp. nov., and proposal of the reclassification of [Cytophaga] latercula Lewin 1969 as Stanierella latercula gen. nov., comb. nov. Int J Syst Evol Microbiol 55, 225-229.
16. Nedashkovskaya, O. I., Kim, S. B., Lysenko, A. M., Mikhailov, V. V., Bae, S. K. & Kim, S. (2005b). Salegentibacter mishustinae sp. nov., isolated from the sea urchin Strongylocentrotus intermedius. Int J Syst Evol Microbiol 55, 235-238.
17. Perry, L. B. (1973). Gliding motility in some non-spreading flexibacteria. J Appl Bacteriol 36, 227-232.
18. Rüger, H.-J. & Krambeck, H.-J. (1994). Evaluation of the BIOLOG substrate metabolism system for classification of marine bacteria. Syst Appl Microbiol 17, 281-288.
19. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
20. Sohn, J. H., Lee, J.-H., Hana, Y., Chun, J., Bae, S. K., Ahn, T.-Y. & Kim, S.-J. (2004). Kordia algicida gen. nov., sp. nov., an algicidal bacterium isolated from red tide. Int J Syst Evol Microbiol 54, 675-680.
21. Swofford, D. L. (2000). PAUP* version 4. Phylogenetic Analysis Using Parsimony (*and Other Methods). Sunderland, MA: Sinauer.
22. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
23. Vinuesa, P., Rademaker, J. L., de Bruijn, F. J. & Werner, D. (1998). Genotypic characterization of Bradyrhizobium strains nodulating endemic woody legumes of the Canary Islands by PCR-restriction fragment length polymorphism analysis of genes encoding 16S rRNA (16S rDNA) and 16S-23S rDNA intergenic spacers, repetitive extragenic palindromic PCR genomic fingerprinting, and partial 16S rDNA sequencing. Appl Environ Microbiol 64, 2096-2104.