Williamsia marianensis sp. nov., a novel actinomycete isolated from the Mariana Trench

International Journal of Systematic and Evolutionary Microbiology

Volumn 56, Issue 5, 2006, Pages 1123-1126

  Pathom Aree, Wasu ^a,e   Nogi, Yuichi ^b   Sutcliffe, Iain C ^c   Ward, Alan C ^a   Horikoshi, Koki ^b   Bull, Alan T ^d   Goodfellow, Michael ^a  

^a NEWCASTLE UNIVERSITY   (United Kingdom)

^b JAPAN AGENCY FOR MARINE EARTH SCIENCE AND TECHNOLOGY   (Japan)

^c NORTHUMBRIA UNIVERSITY   (United Kingdom)

^d UNIVERSITY OF KENT   (United Kingdom)

^e CHIANG MAI UNIVERSITY   (Thailand)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CYTOSINE; FATTY ACID; GUANINE; OLEIC ACID; PALMITIC ACID; RNA 16S; TUBERCULOSTEARIC ACID;

ACTINOBACTERIA; ARTICLE; BACTERIAL CELL; BACTERIAL STRAIN; BACTERIUM ISOLATE; CHEMOTAXONOMY; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; FATTY ACID ANALYSIS; GENOTYPE PHENOTYPE CORRELATION; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PACIFIC OCEAN; PRIORITY JOURNAL; SEDIMENT; SPECIES DIFFERENCE; WILLIAMSIA MARIANENSIS; WILLIAMSIA MURALIS;

ACTINOBACTERIA; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; GEOLOGIC SEDIMENTS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; WATER MICROBIOLOGY;

ACTINOBACTERIA; BACTERIA (MICROORGANISMS); WILLIAMSIA; WILLIAMSIA MURALIS;

EID: 33744718434     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64132-0     Document Type: Article

References (33)

1. Butler, W. R., Floyd, M. M., Brown, J., Toney, S. R., Daneshvar, M. I., Cooksey, R. C., Carr, J., Steigerwalt, A. G. & Charles, N. (2005). Novel mycolic acid-containing bacteria in the family Segniliparaceae fam. nov., including the genus Segniliparus gen. nov., with descriptions of Segniliparus rotundus sp. nov. and Segniliparus rugosus sp. nov. Int J Syst Evol Microbiol 55, 1615-1624.
2. Collins, M. D. (1994). Isoprenoid quinones. In Chemical Methods in Prokaryotic Systematics, pp. 265-309. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.
3. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
4. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
5. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
6. Felsenstein, J. (1993). PHYLIP - Phylogeny Inference Package, version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
7. Fitch, W. M. & Margoliash, E. (1967). Construction of phylogenetic trees: a method based on mutation distances as estimated from cytochrome c sequences is of general applicability. Science 155, 279-284.
8. Goodfellow, M. & Maldonado, L. A. (2006). The families Dietziaceae, Gordoniaceae, Nocardiaceae and Tsukamurellaceae. In The Prokaryotes, 3rd edn, vol. 3, Archaea and Bacteria. Firmicutes, Actinomycetes. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer (in press).
9. Gordon, R. E. & Mihm, J. M. (1962). Identification of Nocardia caviae (Erikson) nov. comb. Ann N Y Acad Sci 98, 628-636.
10. Hamid, M. E., Minnikin, D. E., Goodfellow, M. & Ridell, M. (1993). Thin-layer chromatographic analysis of glycolipids and mycolic acids from Mycobacterium farcinogenes, Mycobacterium senegalense and related taxa. Zentralbl Bakteriol 279, 354-367.
11. Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 329, 1319-1322.
12. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-123. Edited by H. N. Munro. New York: Academic Press.
13. Kämpfer, P., Andersson, M. A., Rainey, F. A., Kroppenstedt, R. M. & Salkinoja-Salonen, M. (1999). Williamsia muralis gen. nov., sp. nov., isolated from the indoor environment of a children's day care centre. Int J Syst Bacteriol 49, 681-687.
14. Kato, C., Li, L., Tamaoka, J. & Horikoshi, K. (1997). Molecular analyses of the sediment of the 11,000-m-deep of the Mariana Trench. Extremophiles 1, 117-123.
15. Kim, S. B., Falconer, C., Williams, E. & Goodfellow, M. (1998). Streptomyces thermocarboxydovorans sp. nov. and Streptomyces thermocarboxydus sp. nov., two moderately thermophilic carboxy dotrophic species from soil. Int J Syst Bacteriol 48, 59-68.
16. Kim, S. B., Brown, R., Oldfield, C., Gilbert, S. C., Iliarionov, S. & Goodfellow, M. (2000). Gordonia amicalis sp. nov., a new dibenzothiophene-desulphurizing actinomycete. Int J Syst Evol Microbiol 50, 2031-2036.
17. Kluge, A. G. & Farris, F. G. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
18. Kroppenstedt, R. M. (1985). Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics, pp. 173-199. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
19. Lechevalier, H. A. & Lechevalier, M. P. (1970). A critical evaluation of the genera of aerobic actinomycetes. In The Actinomycetales, pp. 393-405. Edited by H. Prauser. Jena: VEB Gustav Fischer.
20. Levhevalier, H. A., De Bièvre, C. & Lechevalier, M. P. (1977). Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5, 249-260.
21. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
22. Pathom-aree, W., Stach, J. E. M., Ward, A. C., Horikoshi, K., Bull, A. T. & Goodfellow, M. (2006). Diversity of actinomycetes isolated from the Challenger Deep sediment (10898 m) from the Mariana Trench. Extremophiles (in press).
23. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
24. Soddell, J. A., Stainsby, F. M., Eales, K. L., Kroppenstedt, R. M., Seviour, R. J. & Goodfellow, M. (2006). Millisia brevis gen. nov., sp. nov., an actinomycete isolated from activated sludge foam. Int J Syst Evol Microbiol 56, 739-744.
25. Stach, J. E M., Maldonado, L. A., Ward, A. C., Bull, A. T. & Goodfellow, M. (2004). Williamsia maris sp. nov., a novel actinomycete isolated from the Sea of Japan. Int J Syst Evol Microbiol 54, 191-194.
26. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal of a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479-491.
27. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to the identification of aerobic actinomycetes by thin layer chromatography. Appl Microbiol 28, 226-231.
28. Sutcliffe, I. C. (2000). Characterisation of a lipomannan lipoglycan from the mycolic acid containing actinomycete Dietzia maris. Antonie van Leeuwenhoek 78, 195-201.
29. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
30. Uchida, K., Kudo, T., Suzuki, K. & Nakase, T. (1999). A new rapid method of glycolate test by diethyl ether extraction, which is applicable to a small amount of bacterial cells of less than one milligram. J Gen Appl Microbiol 45, 49-56.
31. Vickers, J. C., Williams, S. T. & Ross, G. W. (1984). A taxonomic approach to selective isolation of streptomycetes from soil. In Biological, Biochemical and Biomedical Aspects of Actinomycetes, pp. 553-561. Edited by L. Ortiz-Ortiz, L. F. Bojalil & V. Yakoleff. Orlando: Academic Press.
32. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
33. Yassin, A. F. & Hupfer, H. (2006). Williamsia deligens sp. nov., isolated from human blood. Int J Syst Evol Microbiol 56, 193-197.