Molecular analyses of the sediment of the 11000-m deep Mariana Trench

Extremophiles

Volumn 1, Issue 3, 1997, Pages 117-123

  Kato, Chiaki ^a   Li, Lina ^a   Tamaoka, Jin ^a   Horikoshi, Koki ^a  

^a JAPAN AGENCY FOR MARINE EARTH SCIENCE AND TECHNOLOGY   (Japan)

Author keywords

Barophilic bacteria; Challenger point; Deep sea; Mariana Trench; Planktonic marine archaea; Pressure regulated operon; Pseudomonas

Indexed keywords

ARCHAEAL DNA; BACTERIAL DNA; BACTERIAL RNA; RNA 16S;

ARTICLE; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OPERON; PACIFIC OCEAN; PHYLOGENY; POLYMERASE CHAIN REACTION;

BASE SEQUENCE; DNA, ARCHAEAL; DNA, BACTERIAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; OPERON; PACIFIC OCEAN; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; WATER MICROBIOLOGY;

EID: 0031196307     PISSN: 14310651     EISSN: None     Source Type: Journal    
DOI: 10.1007/s007920050024     Document Type: Article

References (21)

1. Barns SM, Fundyga RE, Jeffries MW, Pace NR (1994) Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment. Proc Natl Acad Sci USA 91:1609-1613
2. DeLong EF (1992) Archaeain coastal marine environments. Proc Natl Acad Sci USA 89:5685-5689
3. Herrick JB, Madsen EL, Batt CA, Ghiorse WC (1993) Polymerase chain reaction amplification of naphthalene-catabolic and 16S rRNA gene sequences from indigenous sediment bacteria. Appl Environ Microbiol 59:687-694
4. Ikemoto E, Kyo M (1993) Development of microbiological compact mud sampler. Jpn Mar Sci Technol Res 30:1-16
5. Kato C, Sato T, Horikoshi K (1995a) Isolation and properties of barophilic and barotolerant bacteria from deep-sea mud samples. Biodiv Conserv 4:1-9
6. Kato C, Smorawinska M, Sato T, Horikoshi K (1995b) Cloning and expression in Escherichia coli of a pressure-regulated promoter region from a barophilic bacterium, strain DB6705. J Mar Biotechnol 2:125-129
7. Kato C, Masui N, Horikoshi K (1996a) Properties of obligately barophilic bacteria isolated from a sample of deep-sea sediment from the Izu-Bonin trench. J Mar Biotechnol 4:96-99
8. Kato C, Smorawinska M, Sato T, Horikoshi K (1996b) Analysis of a pressure-regulated operon from the barophilic bacterium strain DB6705. Biosci Biotech Biochem 60:166-168
9. Kato C, Tamegai H, Ikegami A, Usami R, Horikoshi K (1996c) Open reading frame 3 of the barotolerant bacterium strain DSS12 is complementary with cydD in Escherichia coli: cydD functions are required for cell stability at high pressure. J Biochem 120:301-305
10. Kato C, Ikegami A, Smorawinska M, Usami R, Horikoshi K (1997) Structure of genes in a pressure-regulated operon and adjacent regions from a barotolerant bacterium strain DSS12. J Mar Biotechnol (in press)
11. Kyo M, Miyazaki E, Tsukioka S, Ochi H, Amitani Y, Tsuchiya T, Aoki T, Takagawa S (1995) The sea trial of "KAIKO", the full ocean depth research ROV. OCEANS'95 3:1991-1996
12. McInerney JO, Wilkinson M, Patching JW, Embley TM, Powell R (1995) Recovery and phylogenetic analysis of novel archaeal rRNA sequences from a deep-sea deposit feeder. Appl Environ Microbiol 61:1646-1648
13. Morita RY (1976) The survival of vegetative microbes. In: Gray TRG, Postgate JR (eds) Cambridge University Press, Cambridge, pp 279-298
14. Piccard J, Dietz RS (1961) Seven miles down. G.P. Putnum, New York
15. Pope DH, Smith WP, Swartz RW, Landau JV (1975) Role of bacterial ribosomes in barotolerance. J Bacteriol 121:664-669
16. Robb FT, Place AR, Sowers KR, Schreier HJ, Dassarma S, Fleischmann EM (1995) Archaea: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
17. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
18. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
19. Schwarz JR, Colwell RR (1975) (abstract). In: Proceedings, 75th annual meeting of the American Society for Microbiology, American Society for Microbiology, Washington DC, p 162
20. Stein JL, Marsh TL, Wu KY, Shizuya H, DeLong EF (1996) Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon. J Bacteriol 178:591-599
21. Yayanos AA, Dietz AS, Boxtel RV (1981) Obligately barophilic bacterium from the Mariana Trench. Proc Natl Acad Sci USA 78:5212-5215