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Volumn 8, Issue 2, 2006, Pages 209-217

Precision and performance characteristics of bisulfite conversion and real-time PCR (MethyLight) for quantitative DNA methylation analysis

Author keywords

[No Author keywords available]

Indexed keywords

BISULFITE; PARAFFIN; PROTEIN MLH1; PROTEIN P16INK4A;

EID: 33744550591     PISSN: 15251578     EISSN: None     Source Type: Journal    
DOI: 10.2353/jmoldx.2006.050135     Document Type: Article
Times cited : (356)

References (43)
  • 1
    • 0036613783 scopus 로고    scopus 로고
    • Methylation matters: A new spin on maspin
    • Costello JF, Vertino PM: Methylation matters: a new spin on maspin. Nat Genet 2002, 31:123-124
    • (2002) Nat Genet , vol.31 , pp. 123-124
    • Costello, J.F.1    Vertino, P.M.2
  • 2
    • 17444417521 scopus 로고    scopus 로고
    • Cancer epigenetics
    • Spec. no 1
    • Laird PW: Cancer epigenetics. Hum Mol Genet 2005, 14(Spec no 1):R65-R76
    • (2005) Hum Mol Genet , vol.14
    • Laird, P.W.1
  • 3
    • 10344260184 scopus 로고    scopus 로고
    • CpG island methylator phenotype in cancer
    • Issa JP: CpG island methylator phenotype in cancer. Nat Rev Cancer 2004, 4:988-993
    • (2004) Nat Rev Cancer , vol.4 , pp. 988-993
    • Issa, J.P.1
  • 7
    • 0038576158 scopus 로고    scopus 로고
    • The power and the promise of DNA methylation markers
    • Laird PW: The power and the promise of DNA methylation markers. Nat Rev Cancer 2003, 3:253-266
    • (2003) Nat Rev Cancer , vol.3 , pp. 253-266
    • Laird, P.W.1
  • 9
    • 25144474539 scopus 로고    scopus 로고
    • DNA methylation, field effects, and colorectal cancer
    • Giovannucci E, Ogino S: DNA methylation, field effects, and colorectal cancer. J Natl Cancer Inst 2005, 97:1317-1319
    • (2005) J Natl Cancer Inst , vol.97 , pp. 1317-1319
    • Giovannucci, E.1    Ogino, S.2
  • 14
    • 0030825309 scopus 로고    scopus 로고
    • COBRA: A sensitive and quantitative DNA methylation assay
    • Xiong Z, Laird PW: COBRA: a sensitive and quantitative DNA methylation assay. Nucleic Acids Res 1997, 25:2532-2534
    • (1997) Nucleic Acids Res , vol.25 , pp. 2532-2534
    • Xiong, Z.1    Laird, P.W.2
  • 15
    • 0025347425 scopus 로고
    • Ligation-mediated PCR improves the sensitivity of methylation analysis by restriction enzymes and detection of specific DNA strand breaks
    • Steigerwald SD, Pfeifer GP, Riggs AD: Ligation-mediated PCR improves the sensitivity of methylation analysis by restriction enzymes and detection of specific DNA strand breaks. Nucleic Acids Res 1990, 18:1435-1439
    • (1990) Nucleic Acids Res , vol.18 , pp. 1435-1439
    • Steigerwald, S.D.1    Pfeifer, G.P.2    Riggs, A.D.3
  • 16
    • 0036314920 scopus 로고    scopus 로고
    • Quantitative methylation analysis using methylation-sensitive single-nucleotide primer extension (Ms-SNuPE)
    • Gonzalgo ML, Jones PA: Quantitative methylation analysis using methylation-sensitive single-nucleotide primer extension (Ms-SNuPE). Methods 2002, 27:128-133
    • (2002) Methods , vol.27 , pp. 128-133
    • Gonzalgo, M.L.1    Jones, P.A.2
  • 17
    • 0036390019 scopus 로고    scopus 로고
    • An analytical method for the detection of methylation differences at specific chromosomal loci using primer extension and ion pair reverse phase HPLC
    • Matin MM, Baumer A, Hornby DP: An analytical method for the detection of methylation differences at specific chromosomal loci using primer extension and ion pair reverse phase HPLC. Hum Mutat 2002, 20:305-311
    • (2002) Hum Mutat , vol.20 , pp. 305-311
    • Matin, M.M.1    Baumer, A.2    Hornby, D.P.3
  • 18
    • 17544402963 scopus 로고    scopus 로고
    • Simultaneous detection of CpG methylation and single nucleotide polymorphism by denaturing high performance liquid chromatography
    • Deng D, Deng G, Smith MF, Zhou J, Xin H, Powell SM, Lu Y: Simultaneous detection of CpG methylation and single nucleotide polymorphism by denaturing high performance liquid chromatography. Nucleic Acids Res 2002, 30:E13
    • (2002) Nucleic Acids Res , vol.30
    • Deng, D.1    Deng, G.2    Smith, M.F.3    Zhou, J.4    Xin, H.5    Powell, S.M.6    Lu, Y.7
  • 19
    • 0036962761 scopus 로고    scopus 로고
    • Evaluation of a potential epigenetic biomarker by quantitative methyl-single nucleotide polymorphism analysis
    • Uhlmann K, Brinckmann A, Toliat MR, Ritter H, Nurnberg P: Evaluation of a potential epigenetic biomarker by quantitative methyl-single nucleotide polymorphism analysis. Electrophoresis 2002, 23:4072-4079
    • (2002) Electrophoresis , vol.23 , pp. 4072-4079
    • Uhlmann, K.1    Brinckmann, A.2    Toliat, M.R.3    Ritter, H.4    Nurnberg, P.5
  • 20
    • 0038678777 scopus 로고    scopus 로고
    • Sensitive and quantitative universal pyrosequencing methylation analysis of CpG sites
    • Colella S, Shen L, Baggerly KA, Issa JP, Krahe R: Sensitive and quantitative universal pyrosequencing methylation analysis of CpG sites. Biotechniques 2003, 35:146-150
    • (2003) Biotechniques , vol.35 , pp. 146-150
    • Colella, S.1    Shen, L.2    Baggerly, K.A.3    Issa, J.P.4    Krahe, R.5
  • 21
    • 0038002236 scopus 로고    scopus 로고
    • Analysis and quantification of multiple methylation variable positions in CpG islands by pyrosequencing
    • Tost J, Dunker J, Gut IG: Analysis and quantification of multiple methylation variable positions in CpG islands by pyrosequencing. Biotechniques 2003, 35:152-156
    • (2003) Biotechniques , vol.35 , pp. 152-156
    • Tost, J.1    Dunker, J.2    Gut, I.G.3
  • 22
    • 16544362680 scopus 로고    scopus 로고
    • Rapid analysis of CpG methylation patterns using RNase T1 cleavage and MALDI-TOF
    • Schatz P, Dietrich D, Schuster M: Rapid analysis of CpG methylation patterns using RNase T1 cleavage and MALDI-TOF. Nucleic Acids Res 2004, 32:e167
    • (2004) Nucleic Acids Res , vol.32
    • Schatz, P.1    Dietrich, D.2    Schuster, M.3
  • 25
    • 0035930097 scopus 로고    scopus 로고
    • Quantitation of GSTP1 methylation in non-neoplastic prostatic tissue and organ-confined prostate adenocarcinoma
    • Jeronimo C, Usadel H, Henrique R, Oliveira J, Lopes C, Nelson WG, Sidransky D: Quantitation of GSTP1 methylation in non-neoplastic prostatic tissue and organ-confined prostate adenocarcinoma. J Natl Cancer Inst 2001, 93:1747-1752
    • (2001) J Natl Cancer Inst , vol.93 , pp. 1747-1752
    • Jeronimo, C.1    Usadel, H.2    Henrique, R.3    Oliveira, J.4    Lopes, C.5    Nelson, W.G.6    Sidransky, D.7
  • 26
    • 0033563083 scopus 로고    scopus 로고
    • CpG island hypermethylation in human colorectal tumors is not associated with DNA methyltransferase overexpression
    • Eads CA, Danenberg KD, Kawakami K, Saltz LB, Danenberg PV, Laird PW: CpG island hypermethylation in human colorectal tumors is not associated with DNA methyltransferase overexpression. Cancer Res 1999, 59:2302-2306
    • (1999) Cancer Res , vol.59 , pp. 2302-2306
    • Eads, C.A.1    Danenberg, K.D.2    Kawakami, K.3    Saltz, L.B.4    Danenberg, P.V.5    Laird, P.W.6
  • 27
    • 19244365868 scopus 로고    scopus 로고
    • A novel real-time PCR assay for quantitative analysis of methylated alleles (QAMA): Analysis of the retinoblastoma locus
    • Zeschnigk M, Bohringer S, Price EA, Onadim Z, Masshofer L, Lohmann DR: A novel real-time PCR assay for quantitative analysis of methylated alleles (QAMA): analysis of the retinoblastoma locus. Nucleic Acids Res 2004, 32:e125
    • (2004) Nucleic Acids Res , vol.32
    • Zeschnigk, M.1    Bohringer, S.2    Price, E.A.3    Onadim, Z.4    Masshofer, L.5    Lohmann, D.R.6
  • 29
    • 16544382188 scopus 로고    scopus 로고
    • MethylQuant: A sensitive method for quantifying methylation of specific cytosines within the genome
    • Thomassin H, Kress C, Grange T: MethylQuant: a sensitive method for quantifying methylation of specific cytosines within the genome. Nucleic Acids Res 2004, 32:e168
    • (2004) Nucleic Acids Res , vol.32
    • Thomassin, H.1    Kress, C.2    Grange, T.3
  • 31
    • 0036314222 scopus 로고    scopus 로고
    • Conversion-specific detection of DNA methylation using real-time polymerase chain reaction (ConLight-MSP) to avoid false positives
    • Rand K, Qu W, Ho T, Clark SJ, Molloy P: Conversion-specific detection of DNA methylation using real-time polymerase chain reaction (ConLight-MSP) to avoid false positives. Methods 2002, 27:114-120
    • (2002) Methods , vol.27 , pp. 114-120
    • Rand, K.1    Qu, W.2    Ho, T.3    Clark, S.J.4    Molloy, P.5
  • 32
    • 0035407651 scopus 로고    scopus 로고
    • Bisulfite genomic sequencing: Systematic investigation of critical experimental parameters
    • Grunau C, Clark SJ, Rosenthal A: Bisulfite genomic sequencing: systematic investigation of critical experimental parameters. Nucleic Acids Res 2001, 29:E65
    • (2001) Nucleic Acids Res , vol.29
    • Grunau, C.1    Clark, S.J.2    Rosenthal, A.3
  • 35
    • 18344376930 scopus 로고    scopus 로고
    • The Nurses' Health Study: Lifestyle and health among women
    • Colditz GA, Hankinson SE: The Nurses' Health Study: lifestyle and health among women. Nat Rev Cancer 2005, 5:388-396
    • (2005) Nat Rev Cancer , vol.5 , pp. 388-396
    • Colditz, G.A.1    Hankinson, S.E.2
  • 37
    • 32844456752 scopus 로고    scopus 로고
    • Distinct molecular features of colorectal carcinoma with signet ring cell component and colorectal carcinoma with mucious component
    • Ogino S, Brahmandam M, Cantor M, Namgyal C, Kawasaki T, Kirkner G, Meyerhardt J, Loda M, Fuchs CS: Distinct molecular features of colorectal carcinoma with signet ring cell component and colorectal carcinoma with mucious component. Mod Pathol 2006, 19:59-68
    • (2006) Mod Pathol , vol.19 , pp. 59-68
    • Ogino, S.1    Brahmandam, M.2    Cantor, M.3    Namgyal, C.4    Kawasaki, T.5    Kirkner, G.6    Meyerhardt, J.7    Loda, M.8    Fuchs, C.S.9
  • 39
    • 0041441131 scopus 로고    scopus 로고
    • Development and assessment of a quantitative reverse transcription-PCR assay for simultaneous measurement of four amplicons
    • Grace MB, McLeland CB, Gagliardi SJ, Smith JM, Jackson III WE, Blakely WF: Development and assessment of a quantitative reverse transcription-PCR assay for simultaneous measurement of four amplicons. Clin Chem 2003, 49:1467-1475
    • (2003) Clin Chem , vol.49 , pp. 1467-1475
    • Grace, M.B.1    McLeland, C.B.2    Gagliardi, S.J.3    Smith, J.M.4    Jackson III, W.E.5    Blakely, W.F.6
  • 40
    • 0035379562 scopus 로고    scopus 로고
    • Quantitation of viral DNA by real-time PCR applying duplex amplification, internal standardization, and two-color fluorescence detection
    • Gruber F, Falkner FG, Dorner F, Hammerle T: Quantitation of viral DNA by real-time PCR applying duplex amplification, internal standardization, and two-color fluorescence detection. Appl Environ Microbiol 2001, 67:2837-2839
    • (2001) Appl Environ Microbiol , vol.67 , pp. 2837-2839
    • Gruber, F.1    Falkner, F.G.2    Dorner, F.3    Hammerle, T.4
  • 41
    • 0035060097 scopus 로고    scopus 로고
    • Specific reverse transcription-PCR quantification of vascular endothelial growth factor (VEGF) splice variants by LightCycler technology
    • Wellmann S, Taube T, Paal K, Graf VEH, Geilen W, Seifert G, Eckert C, Henze G, Seeger K: Specific reverse transcription-PCR quantification of vascular endothelial growth factor (VEGF) splice variants by LightCycler technology. Clin Chem 2001, 47:654-660
    • (2001) Clin Chem , vol.47 , pp. 654-660
    • Wellmann, S.1    Taube, T.2    Paal, K.3    Graf, V.E.H.4    Geilen, W.5    Seifert, G.6    Eckert, C.7    Henze, G.8    Seeger, K.9
  • 42
    • 0036861183 scopus 로고    scopus 로고
    • Quantification of PCR bias caused by a single nucleotide polymorphism in SMN gene dosage analysis
    • Ogino S, Wilson RB: Quantification of PCR bias caused by a single nucleotide polymorphism in SMN gene dosage analysis. J Mol Diagn 2002, 4:185-190
    • (2002) J Mol Diagn , vol.4 , pp. 185-190
    • Ogino, S.1    Wilson, R.B.2


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