메뉴 건너뛰기




Volumn 54, Issue 6 II, 2006, Pages 2444-2455

A statistical model for microarrays, optimal estimation algorithms, and limits of performance

Author keywords

Cross hybridization; DNA microarrays; Maximum a posteriori; Maximum likelihood; Minimum mean square error (MMSE) estimation; Poisson noise; Quantum limited SNR; Shot noise; Statistical modeling

Indexed keywords

ALGORITHMS; BIOSENSORS; DNA; MATHEMATICAL MODELS; MAXIMUM LIKELIHOOD ESTIMATION; OPTIMIZATION; POISSON DISTRIBUTION; PROBABILITY; SIGNAL INTERFERENCE; SIGNAL TO NOISE RATIO; SPURIOUS SIGNAL NOISE;

EID: 33744503151     PISSN: 1053587X     EISSN: None     Source Type: Journal    
DOI: 10.1109/TSP.2006.873716     Document Type: Article
Times cited : (18)

References (21)
  • 3
    • 21444438484 scopus 로고    scopus 로고
    • "Biological shot-noise and quantum-limited signal-to-noise ratio in affinity-based biosensors"
    • 084701
    • A. Hassibi, S. Zahedi, R. Navid, R. W. Dutton, and T. H. Lee, "Biological shot-noise and quantum-limited signal-to-noise ratio in affinity-based biosensors," J. Appl. Phys., vol. 97, no. 084701, 2005.
    • (2005) J. Appl. Phys. , vol.97
    • Hassibi, A.1    Zahedi, S.2    Navid, R.3    Dutton, R.W.4    Lee, T.H.5
  • 6
    • 0037195138 scopus 로고    scopus 로고
    • "Quantitative noise analysis for gene expression microarray experiments"
    • Oct. 29
    • Y. Tu, G. Stolovitzky, and U. Klein, "Quantitative noise analysis for gene expression microarray experiments," Proc. Nat. Acad. Sci. (PNAS), pp. 14031-14036, Oct. 29, 2002.
    • (2002) Proc. Nat. Acad. Sci. (PNAS) , pp. 14031-14036
    • Tu, Y.1    Stolovitzky, G.2    Klein, U.3
  • 7
    • 33744459240 scopus 로고    scopus 로고
    • "A probabilistic model for inherent noise and systematic errors of microarrays"
    • presented at the IEEE Int. Workshop Genomic Signal Processing Statistics, Newport, RI, May 22-24
    • A. Hassibi and H. Vikalo, "A probabilistic model for inherent noise and systematic errors of microarrays," presented at the IEEE Int. Workshop Genomic Signal Processing Statistics, Newport, RI, May 22-24, 2005.
    • (2005)
    • Hassibi, A.1    Vikalo, H.2
  • 8
    • 0035793042 scopus 로고    scopus 로고
    • "Model-based analysis of oligonucleotide arrays"
    • C. Li and W. H. Wong, "Model-based analysis of oligonucleotide arrays," Proc. Nat. Acad. Sci. (PNAS), vol. 98, pp. 31-36, 2001.
    • (2001) Proc. Nat. Acad. Sci. (PNAS) , vol.98 , pp. 31-36
    • Li, C.1    Wong, W.H.2
  • 9
    • 0037934649 scopus 로고    scopus 로고
    • "Modeling of DNA microarray data by using physical properties of hybridization"
    • Jun
    • G. A. Held, G. Grinstein, and Y. Tu, "Modeling of DNA microarray data by using physical properties of hybridization," Proc. Nat. Acad. Sci. (PNAS), vol. 100, pp. 7575-7580, Jun. 2003.
    • (2003) Proc. Nat. Acad. Sci. (PNAS) , vol.100 , pp. 7575-7580
    • Held, G.A.1    Grinstein, G.2    Tu, Y.3
  • 10
    • 33744472806 scopus 로고    scopus 로고
    • "Optimal estimation of gene expression levels in microarrays"
    • presented at the IEEE Int. Workshop Genomic Signal Processing Statistics, Newport, RI, May 22-24
    • H. Vikalo, A. Hassibi, and B. Hassibi, "Optimal estimation of gene expression levels in microarrays," presented at the IEEE Int. Workshop Genomic Signal Processing Statistics, Newport, RI, May 22-24, 2005.
    • (2005)
    • Vikalo, H.1    Hassibi, A.2    Hassibi, B.3
  • 11
    • 0032539693 scopus 로고    scopus 로고
    • "A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics"
    • J. SantaLucia Jr., "A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics," Proc. Nat. Acad. Sci. USA, vol. 95, pp. 1460-1465, 1998.
    • (1998) Proc. Nat. Acad. Sci. USA , vol.95 , pp. 1460-1465
    • SantaLucia Jr., J.1
  • 13
  • 14
    • 15944411023 scopus 로고    scopus 로고
    • "GenRate: A generative model that finds and scores genes by jointly accounting for the expression and genomic arrangement of putative exons"
    • Jan
    • B. J. Frey, Q. D. Morris, W. Zhang, N. Mohammad, and T. R. Hughes, "GenRate: A generative model that finds and scores genes by jointly accounting for the expression and genomic arrangement of putative exons," in Proc. Pacific Symp. Biocomputing, Jan. 2005, pp. 495-506.
    • (2005) Proc. Pacific Symp. Biocomputing , pp. 495-506
    • Frey, B.J.1    Morris, Q.D.2    Zhang, W.3    Mohammad, N.4    Hughes, T.R.5
  • 15
    • 0030493826 scopus 로고    scopus 로고
    • "A reflective Newton method for minimizing a quadratic function subject to bounds on some of the variables"
    • T. F. Coleman and Y. Li, "A reflective Newton method for minimizing a quadratic function subject to bounds on some of the variables," SIAM J. Optim., vol. 6, no. 4, pp. 1040-1058, 1996.
    • (1996) SIAM J. Optim. , vol.6 , Issue.4 , pp. 1040-1058
    • Coleman, T.F.1    Li, Y.2
  • 17
    • 0036772248 scopus 로고    scopus 로고
    • "An algorithm to select target specific probes for DNA chips"
    • L. Kaderali and A. Schliep, "An algorithm to select target specific probes for DNA chips," Bioinformatics, vol. 18, no. 10, pp. 1340-1349, 2002.
    • (2002) Bioinformatics , vol.18 , Issue.10 , pp. 1340-1349
    • Kaderali, L.1    Schliep, A.2
  • 18
    • 33644821190 scopus 로고    scopus 로고
    • "Molecular characterization of breast cancer cell lines by a low density microarray"
    • F. de Longueville et al., "Molecular characterization of breast cancer cell lines by a low density microarray," Int. J. Oncology, vol. 27, pp. 881-892, 2005.
    • (2005) Int. J. Oncology , vol.27 , pp. 881-892
    • de Longueville, F.1
  • 19
    • 26844449481 scopus 로고    scopus 로고
    • "Low-density DNA microarray for detection of most frequent missense point mutations"
    • Feb. 15
    • A. Rangel Lopez, "Low-density DNA microarray for detection of most frequent missense point mutations," BMC Biotechnol., vol. 8, no. 5, Feb. 15, 2005.
    • (2005) BMC Biotechnol. , vol.8 , Issue.5
    • Rangel Lopez, A.1
  • 20
    • 10744233751 scopus 로고    scopus 로고
    • "Use of a low-density microarray for studying gene expression patterns induced by hepatoxicants on primary cultures of rat hepatocytes"
    • F. de Longueville et al., "Use of a low-density microarray for studying gene expression patterns induced by hepatoxicants on primary cultures of rat hepatocytes," Toxicolog. Sci., vol. 75, pp. 378-392, 2003.
    • (2003) Toxicolog. Sci. , vol.75 , pp. 378-392
    • de Longueville, F.1
  • 21
    • 18044404289 scopus 로고    scopus 로고
    • "Shift anticipated in DNA microarray market"
    • A. Bouchie, "Shift anticipated in DNA microarray market," Nature Biotechnol., vol. 20, no. 8, 2002.
    • (2002) Nature Biotechnol. , vol.20 , Issue.8
    • Bouchie, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.