메뉴 건너뛰기




Volumn 9, Issue 3, 2006, Pages 332-338

High-throughput gene expression profiling - A work-in-progress with great potential for proteomics

Author keywords

Differential expression profiling; High throughput gene expression profiling; High throughput gene expression validation; High throughput microdissection; Whole genome expression profiling

Indexed keywords

COMPLEMENTARY DNA; TRANSCRIPTOME; TYPE II SITE SPECIFIC DEOXYRIBONUCLEASE;

EID: 33646848797     PISSN: 13676733     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review
Times cited : (2)

References (34)
  • 3
    • 30044440332 scopus 로고    scopus 로고
    • Abundant novel transcriptional units and unconventional gene pairs on human chromosome 22
    • Lipovich L, King M-C: Abundant novel transcriptional units and unconventional gene pairs on human chromosome 22. Genome Res (2006) 16(1):45-54.
    • (2006) Genome Res , vol.16 , Issue.1 , pp. 45-54
    • Lipovich, L.1    King, M.-C.2
  • 4
    • 0025347909 scopus 로고
    • Transient alterations in the expression of protease and extracellular matrix genes during metastatlc lung colonization by H-ras-transformed 10T1/2 fibroblasts
    • Gingras MC, Jarolim L, Finch J, Bowden GT, Wright JA, Greenberg AH: Transient alterations In the expression of protease and extracellular matrix genes during metastatlc lung colonization by H-ras-transformed 10T1/2 fibroblasts. Cancer Res (1990) 50(13):4061-4066.
    • (1990) Cancer Res , vol.50 , Issue.13 , pp. 4061-4066
    • Gingras, M.C.1    Jarolim, L.2    Finch, J.3    Bowden, G.T.4    Wright, J.A.5    Greenberg, A.H.6
  • 5
    • 0029117212 scopus 로고
    • Little expression of cytokine mRNA by fresh tumour-infiltrating mononuclear leukocytes from giloma and lung adenocarcinoma
    • Gingras MC, Roussel E, Roth JA, Moser RP: Little expression of cytokine mRNA by fresh tumour-infiltrating mononuclear leukocytes from giloma and lung adenocarcinoma. Cytokine (1995) 7(6):580-588.
    • (1995) Cytokine , vol.7 , Issue.6 , pp. 580-588
    • Gingras, M.C.1    Roussel, E.2    Roth, J.A.3    Moser, R.P.4
  • 8
    • 0036460083 scopus 로고    scopus 로고
    • Evaluation of Affymetrix Gene Chip sensitivity in rat hippocampal tissue using SAGE analysis. Serial Analysis of Gene Expression
    • Evans SJ, Datson NA, Kabbaj M, Thompson RC, Vreugdenhil E, De Kloet ER, Watson SJ, Akil H: Evaluation of Affymetrix Gene Chip sensitivity in rat hippocampal tissue using SAGE analysis. Serial Analysis of Gene Expression. Eur J Neurosci (2002) 16(3):409-413.
    • (2002) Eur J Neurosci , vol.16 , Issue.3 , pp. 409-413
    • Evans, S.J.1    Datson, N.A.2    Kabbaj, M.3    Thompson, R.C.4    Vreugdenhil, E.5    De Kloet, E.R.6    Watson, S.J.7    Akil, H.8
  • 9
    • 27744448348 scopus 로고    scopus 로고
    • Microarrays: Applications and pitfalls
    • Fathallah-Shaykh HM: Microarrays: Applications and pitfalls. Arch Neurol (2005) 62(11):1669-1672.
    • (2005) Arch Neurol , vol.62 , Issue.11 , pp. 1669-1672
    • Fathallah-Shaykh, H.M.1
  • 10
    • 23944434670 scopus 로고    scopus 로고
    • Gene expression profiling in breast cancer: Towards individualising patient management
    • Murphy N, Millar E, Lee CS: Gene expression profiling in breast cancer: Towards individualising patient management Pathology (2005) 37(4):271-277.
    • (2005) Pathology , vol.37 , Issue.4 , pp. 271-277
    • Murphy, N.1    Millar, E.2    Lee, C.S.3
  • 13
    • 0030586931 scopus 로고    scopus 로고
    • Equalizing cDNA subtraction based on selective suppression of polymerase chain reaction: Cloning of Jurkat cell transcripts induced by phytohemagglutin and phorbol 12-myristate 13-acetate
    • Gurskaya NG, Diatchenko L, Chenchik A, Siebert PD, Khaspekov GL, Lukyanov KA, Vagner LL, Ermolaeva OD, Lukyanov SA, Sverdlov ED: Equalizing cDNA subtraction based on selective suppression of polymerase chain reaction: Cloning of Jurkat cell transcripts induced by phytohemagglutin and phorbol 12-myristate 13-acetate. Anal Biochem (1996) 240(1):90-97.
    • (1996) Anal Biochem , vol.240 , Issue.1 , pp. 90-97
    • Gurskaya, N.G.1    Diatchenko, L.2    Chenchik, A.3    Siebert, P.D.4    Khaspekov, G.L.5    Lukyanov, K.A.6    Vagner, L.L.7    Ermolaeva, O.D.8    Lukyanov, S.A.9    Sverdlov, E.D.10
  • 14
    • 0032950238 scopus 로고    scopus 로고
    • Isolation of potato genes that are induced during an early stage of the hypersensitive response to Phytophthora infestans
    • Birch PRJ, Avrova AO, Lyon GD, Duncan JM, Toth RL: Isolation of potato genes that are induced during an early stage of the hypersensitive response to Phytophthora infestans. Mol Plant Microbe Interact (1999) 12(4):356-361.
    • (1999) Mol Plant Microbe Interact , vol.12 , Issue.4 , pp. 356-361
    • Birch, P.R.J.1    Avrova, A.O.2    Lyon, G.D.3    Duncan, J.M.4    Toth, R.L.5
  • 15
    • 3843051389 scopus 로고    scopus 로고
    • New insights into ADPKD molecular pathways using combination of SAGE and microarray technologies
    • Husson H, Manavalan P, Akmaev VR, Russo RJ, Cook B, Richards B, Barberio D, Uu D, Cao X, Landes GM, Wang CJ et al: New insights into ADPKD molecular pathways using combination of SAGE and microarray technologies. Genomics (2004) 84(3):497-510. Describes the combined use of SAGE and microarray technologies to overcome the limitations of each individual technique.
    • (2004) Genomics , vol.84 , Issue.3 , pp. 497-510
    • Husson, H.1    Manavalan, P.2    Akmaev, V.R.3    Russo, R.J.4    Cook, B.5    Richards, B.6    Barberio, D.7    Uu, D.8    Cao, X.9    Landes, G.M.10    Wang, C.J.11
  • 16
    • 0033559117 scopus 로고    scopus 로고
    • Combining SSH and cDNA microarrays for rapid identification of differentially expressed genes
    • Yang GP, Ross DT, Kuang WW, Brown PO, Weigel RJ: Combining SSH and cDNA microarrays for rapid identification of differentially expressed genes. Nucleic Acids Res (1999) 27(6):1517-1523. The first description of a combined approach for gene expression profiling.
    • (1999) Nucleic Acids Res , vol.27 , Issue.6 , pp. 1517-1523
    • Yang, G.P.1    Ross, D.T.2    Kuang, W.W.3    Brown, P.O.4    Weigel, R.J.5
  • 17
    • 8444247532 scopus 로고    scopus 로고
    • High-throughput screening of suppression subtractive hybridization cDNA libraries using DNA microarray analysis
    • van den Berg N, Crampton BG, Hein I, Birch PRJ, Berger DK: High-throughput screening of suppression subtractive hybridization cDNA libraries using DNA microarray analysis. BioTechniques (2004) 37(5):818-824.
    • (2004) BioTechniques , vol.37 , Issue.5 , pp. 818-824
    • Van Den Berg, N.1    Crampton, B.G.2    Hein, I.3    Birch, P.R.J.4    Berger, D.K.5
  • 18
    • 20444383874 scopus 로고    scopus 로고
    • Improved representation of gene markers on microarray by PCR-select subtracted cDNA targets
    • Yakubov E, Dinerman P, Kuperstein F, Saban S, Yavin E: Improved representation of gene markers on microarray by PCR-select subtracted cDNA targets. Brain Res Mol Brain Res (2005) 137(1-2):110-118. Demonstrates that the use of subtracted cDNA library greatly improves the level of microarray sensitivity for the detection of differentially expressed genes.
    • (2005) Brain Res Mol Brain Res , vol.137 , Issue.1-2 , pp. 110-118
    • Yakubov, E.1    Dinerman, P.2    Kuperstein, F.3    Saban, S.4    Yavin, E.5
  • 19
    • 2442702902 scopus 로고    scopus 로고
    • Comparing gene discovery from Affymetrix GeneChip microarrays and Clontech PCR-select cDNA subtraction: A case study
    • doi:10.1186/1471-2164-5-26
    • Cao W, Epstein C, Liu H, DeLoughery C, Ge N, Lin J, Diao R, Cao H, Long F, Zhang X, Chen Y et al: Comparing gene discovery from Affymetrix GeneChip microarrays and Clontech PCR-select cDNA subtraction: A case study. BMC Genomics (2004) 5(1):26. doi:10.1186/1471-2164-5-26 The only study that has been conducted in parallel to compare the expression profiles obtained from microarray and SSH. The results demonstrate the limitation of commercial microarrays for whole-genome expression profiling.
    • (2004) BMC Genomics , vol.5 , Issue.1 , pp. 26
    • Cao, W.1    Epstein, C.2    Liu, H.3    DeLoughery, C.4    Ge, N.5    Lin, J.6    Diao, R.7    Cao, H.8    Long, F.9    Zhang, X.10    Chen, Y.11
  • 20
    • 0141502194 scopus 로고    scopus 로고
    • Novel potential ALL low-risk markers revealed by gene expression profiling with new high-throughput SSH-CCS-PCR
    • Qiu J, Gunaratne P, Peterson LE, Khurana O, Walsham N, Loulseged H, Kami RJ, Roussel E, Gibbs RA, Margolin JF, Gingras MC: Novel potential ALL low-risk markers revealed by gene expression profiling with new high-throughput SSH-CCS-PCR. Leukemia (2003) 17(9):1891-1900. Provides a description of a combined SSH, CCS and QRT-PCR approach for whole-genome expression profiling, resulting in the identification of acute lymphoblastic leukemia markers.
    • (2003) Leukemia , vol.17 , Issue.9 , pp. 1891-1900
    • Qiu, J.1    Gunaratne, P.2    Peterson, L.E.3    Khurana, O.4    Walsham, N.5    Loulseged, H.6    Kami, R.J.7    Roussel, E.8    Gibbs, R.A.9    Margolin, J.F.10    Gingras, M.C.11
  • 24
    • 5644275524 scopus 로고    scopus 로고
    • GenCompass: A universal system for analysing gene expression for any genome
    • Luscombe NM, Babu MM: GenCompass: A universal system for analysing gene expression for any genome. Trends Biotechnol (2004) 22(11):552-555. Provides a succinct description of the GenCompass technology.
    • (2004) Trends Biotechnol , vol.22 , Issue.11 , pp. 552-555
    • Luscombe, N.M.1    Babu, M.M.2
  • 26
    • 33646835931 scopus 로고    scopus 로고
    • Application of clonal single-molecule arrays to genome-wide expression analysis
    • Marco Island, FL, USA
    • Schroth GP: Application of clonal single-molecule arrays to genome-wide expression analysis. Advances in Genome Biology & Technology Conference, Marco Island, FL, USA (2006).
    • (2006) Advances in Genome Biology & Technology Conference
    • Schroth, G.P.1
  • 27
    • 0034747127 scopus 로고    scopus 로고
    • BADGE, Beads Array for the Detection of Gene Expression, a high- throughput diagnostic bioassay
    • Yang L, Tran DK, Wang X. BADGE, Beads Array for the Detection of Gene Expression, a high- throughput diagnostic bioassay. Genome Res (2001) 11(11):1888-1898.
    • (2001) Genome Res , vol.11 , Issue.11 , pp. 1888-1898
    • Yang, L.1    Tran, D.K.2    Wang, X.3
  • 32
    • 9244248679 scopus 로고    scopus 로고
    • Gene expression profiles in formalin-fixed, paraffin-embedded tissues obtained with a novel assay for microarray analysis
    • Bibikova M, Yeakley JM, Chudin E, Chen J, Wickham E, Wang-Rodriguez J, Fan J-B: Gene expression profiles in formalin-fixed, paraffin-embedded tissues obtained with a novel assay for microarray analysis. Clin Chem (2004) 50(12):2384-2386.
    • (2004) Clin Chem , vol.50 , Issue.12 , pp. 2384-2386
    • Bibikova, M.1    Yeakley, J.M.2    Chudin, E.3    Chen, J.4    Wickham, E.5    Wang-Rodriguez, J.6    Fan, J.-B.7
  • 34


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.