Genetic structure among 38 populations from the United States based on 11 U.S. core Y chromosome STRs

Journal of Forensic Sciences

Volumn 51, Issue 3, 2006, Pages 580-585

  Redd, Alan J ^a,b   Chamberlain, Veronica F ^b   Kearney, Veronica F ^b   Stover, Daryn ^b   Karafet, Tatiana ^b   Calderon, Karl ^b   Walsh, Bruce ^c   Hammer, Michael F ^b,c  

^a UNIVERSITY OF KANSAS   (United States)

^b UNIVERSITY OF ARIZONA   (United States)

^c University of Arizona   (United States)

Author keywords

African American; Asian American; DYS19; DYS385ab; DYS389I; DYS389II; DYS390; DYS391; DYS392; DYS393; DYS438; DYS439; European American; Forensic science; Hispanic American; Native American; Population structure; Short tandem repeats; Y chromosome DNA

Indexed keywords

DNA;

AFRICAN AMERICAN; AMERICAN INDIAN; ASIAN AMERICAN; CHROMOSOME; CONFERENCE PAPER; ETHNIC GROUP; EUROPEAN AMERICAN; FORENSIC SCIENCE; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; HAPLOTYPE; HISPANIC; HUMAN; POLYMERASE CHAIN REACTION; POPULATION STRUCTURE; PRIORITY JOURNAL; SHORT TANDEM REPEAT; UNITED STATES; Y CHROMOSOME;

ANALYSIS OF VARIANCE; CHROMOSOMES, HUMAN, Y; CONTINENTAL POPULATION GROUPS; DATABASES; DNA FINGERPRINTING; GENETICS, POPULATION; HAPLOTYPES; HUMANS; POLYMERASE CHAIN REACTION; TANDEM REPEAT SEQUENCES; UNITED STATES; VARIATION (GENETICS);

EID: 33646734285     PISSN: 00221198     EISSN: 15564029     Source Type: Journal    
DOI: 10.1111/j.1556-4029.2006.00113.x     Document Type: Conference Paper

References (21)

1. Lewontin R Hartl D. Population genetics in forensic DNA typing. Science 1991 20:1745 50.
2. Kayser M Brauer S Schadlich H Prinz M Batzer M Zimmerman P, et al. Y chromosome STR haplotypes and the genetic structure of U.S. populations of African, European, and Hispanic ancestry. Genome Res 2003 13:624 34.
3. Wilder J Kingan S Mobasher Z Pilkington M Hammer M. Global patterns of human mitochondrial DNA and Y-chromosome structure are not influenced by higher migration rates of females versus males. Nat Genet 2004 36:1122 5.
4. Hammer MF Zegura SL. The role of the Y chromosome in human evolutionary studies. Evol Anthropol 1996 5:116 34.
5. Zhivotovsky L Ahmed S Wang W Bittles A. The forensic DNA implications of genetic differentiation between endogamous communities. Forensic Sci Int 2001 119:269 72.
6. Roewer L Krawczak M Willuweit S Nagy M Alves C Amorim A, et al. Online reference database of European Y-chromosomal short tandem repeat (STR) haplotypes. Forensic Sci Int 2001 118:106 13.
7. Kayser M Brauer S Willuweit S Schadlich H Batzer M Zawacki J, et al. Online Y-chromosomal short tandem repeat haplotype reference database (YHRD) for U. W. populations. J Forensic Sci 2002 47:513 9.
8. Budowle B Adamowicz M Aranda XG Barna C Chakraborty R Cheswick D, et al. Twelve short tandem repeat loci Y chromosome haplotypes: genetic analysis on populations residing in North America. Forensic Sci Int 2005 150:1 15.
9. Urbanek M Goldman D Long JC. The apportionment of dinucleotide repeat diversity in Native Americans and Europeans: a new approach to measuring gene identity reveals asymmetric patterns of divergence. Mol Biol Evol 1996 13:943 53.
10. Karafet T Zegura SL Vuturo-Brady J Posukh O Osipova L Wiebe V, et al. Y chromosome markers and trans-bering strait dispersals. Am J Phys Anthropol 1997 102:301 14.
11. Karafet TM Zegura SL Posukh O Osipova L Bergen A Long J, et al. Ancestral Asian source(s) of new world Y-chromosome founder haplotypes. Am J Hum Genet 1999 64:817 31.
12. Zegura SL Karafet TM Zhivotovsky LA Hammer MF. High-resolution SNPs and microsatellite haplotypes point to a single, recent entry of Native American Y chromosomes into the Americas. Mol Biol Evol 2004 21:164 75.
13. Redd A Agellon A Kearney V Contreras V Karafet T Park H, et al. Forensic value of 14 novel STRs on the human Y chromosome. Forensic Sci Int 2002 130:97 111.
14. Butler J Schoske R Vallone P Kline M Redd A Hammer M. A novel multiplex for simultaneous amplification of 20 Y chromosome STR markers. Forensic Sci Int 2002 129:10 24.
15. Nei M. Molecular evolutionary genetics. New York:Columbia University Press 1987.
16. Excoffier L Smouse PE Quattro JM. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 1992 131:479 91.
17. Schneider S Kueffer J-M Roessli D Excoffier L. ARLEQUIN: a software for population genetic analysis. Geneva:Genetics and Biometry Laboratory, Stanford University 2000.
18. Kruskal JB. Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis. Psychometrika 1964 29:1 27.
19. Jorde LB Watkins WS Bamshad MJ Dixon ME Ricker CE Seielstad MT, et al. The distribution of human genetic diversity: a comparison of mitochondrial, autosomal, and Y-chromosome data. Am J Hum Genet 2000 66:979 88.
20. Merriwether D Huston S Iyengar S Hamman R Norris J Shetterly S, et al. Mitochondrial versus nuclear admixture estimates demonstrate a past history of directional mating. Am J Phys Anthropol 1997 102:153 9.
21. Chakraborty BM Fernandez-Esquer ME Chakraborty R. Is being Hispanic a risk factor for non-insulin dependent diabetes mellitus (NIDDM)? Ethnic Dis 1999 9:278 83.