A code and data archival and dissemination tool for the proteomics community

American Biotechnology Laboratory

Volumn 24, Issue 5, 2006, Pages 28-30

  Falkner, Jayson A ^a   Ulintz, Peter J ^a   Andrews, Philip C ^a  

^a UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 33646570557     PISSN: 07493223     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Short Survey

References (18)

1. http://sashimi.sf.net.
2. Craig, R.; Cortens, J.P.; Beavis, R.C. Open source system for analyzing, validating, and storing protein identification data. J. Proteome Res. 2004 Nov-Dec, 3(6), 1234-42. www.thegpm.org.
3. Pilato, M.; Collins-Sussman, B.; Fitzpatrick, B. Version Control with Subversion; O'Reilly Media, Inc.: Sebastopol, CA, June 2004.
4. Apache Software Foundation. Lucene http://lucene.apache.org.
5. Krawczyk, H.; Bellare, M.; Canetti, R. HMAC: keyed-hashing for message authentication. www.ietf.org/rfc/rfc2104.txt, February 1997.
6. Fielding, R.; Irvine, U.C.; Gettys, J.; Mogul J.; Frystyk, H.; Masinter, L.; Leach, P.; Berners-Lee, T. Hypertext transfer protocol - HTTP/1.1, www.ietf.org/rfc/rfc2616.txt. June 1999.
7. Cohen, B. Incentives build robustness in BitTorrent. www.bittorrent.com. May 22, 2003.
8. Sun Microsystems Java Web Start. http://java.sun.com/products/ javawebstart/.
9. PSI-MS, mzData Standard. http://psidev.sourceforge.net/ms/*mzdata.
10. Pedrioli, P.; Eng, J.K.; Hubley, R.; Vogelzang, M.; Deutsch, E.W.; Raught, B.; Pratt, B.; Nilsson, E.; Angeletti, R.H.; Apweiler, R.; Cheung, K.; Costello, C.E.; Hermjakob, H.; Huang, S.; Julian, R.K., Jr.; Kapp, E.; McComb, M.E.; Oliver, S.G.; Omenn, G.; Paton, N.W.; Simpson, R.; Smith, R.; Taylor, C.F.; Zhu, W.; Aebersold, R. A commun open representation of mass spectrometry data and its application to proteomics research. Nat. Biotechnol. 2004 Nov, 22(11), 1459-66.
11. Winer, D. RSS 2.0 Specification. http://blogs.law.harvard.edu/tech/rss.
12. Nottingham, M.; et al. The Atom Syndication Format. http://atomenabled. org.
13. www.proteomecommons.org/current/511/docs/atom-reference.html.
14. www.proteomecommons.org/current/511/docs/residue-reference.html.
15. www.proteomecommons.org/current/511/docs/residue combination-reference. html.
16. www.proteomecommons.org/current/511/ResidueCombinationCalculator.jnlp.
17. www.proteomecommons.org/current/511/PeptideCalculator.jnlp.
18. www.proteomecommons.org/current/531/ConvertPeakList.jnlp.