Selective isolation of lysine-free tryptic peptides delimited by arginine residues: A new tool for proteome analysis

Journal of Proteome Research

Volumn 5, Issue 5, 2006, Pages 1204-1213

  Sánchez, Aniel ^a   González, Luis J ^a   Ramos, Yassel ^a   Betancourt, Lázaro ^a   Gil, Jeovanis ^a   Besada, Vladimir ^a   Fernández De Cossio, Jorge ^a   Alvarez, Félix ^a   Padrón, Gabriel ^a  

^a CENTER FOR GENETIC ENGINEERING AND BIOTECHNOLOGY   (Cuba)

Author keywords

Affinity chromatography; Mass spectrometry; Protein identification; Proteomics; Selective peptide isolation

Indexed keywords

ARGININE; LYSINE; PROTEINASE; PROTEOME; TRYPTASE;

ACYLATION; AFFINITY CHROMATOGRAPHY; ALKYLATION; ARABIDOPSIS; ARTICLE; BIOTINYLATION; COMPUTER PROGRAM; ESCHERICHIA COLI; HUMAN; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MYCOBACTERIUM TUBERCULOSIS; NEISSERIA MENINGITIDIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN ISOLATION; PROTEOMICS; QUANTITATIVE ANALYSIS; SACCHAROMYCES CEREVISIAE; VIBRIO CHOLERAE;

AMINO ACID SEQUENCE; ARGININE; BIOTINYLATION; CHROMATOGRAPHY, AFFINITY; LYSINE; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; PEPTIDES; PROTEOMICS; RECOMBINANT PROTEINS; STREPTOKINASE; TRYPSIN;

EID: 33646554797     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr060003w     Document Type: Article

References (39)

1. Fey, S. J.; Larsen, P. M. Curr. Opin. Chem. Biol. 2001, 5, 26-33.
2. Pandey, A.; Mann, M. Nature 2000, 405, 837-846.
3. Griffin, T. J.; Aebersold R. J. Biol. Chem. 2001, 276, 45497-45500.
4. Gygi, S. P.; Corthals, G. L.; Zhang, Y.; Rochon, Y.; Aebersold, R. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 9390-9395.
5. Santoni, W.; Molloy, M.; Rabilloud, T. Electrophoresis 2000, 21, 1054-1070.
6. Washburn, M. P.; Wolters, D.; Yates, J. R., III. Nat. Biotechnol. 2001, 19, 242-247.
7. Washburn, M. P.; Ulaszek, R.; Deciu, C.; Schieltz, D. M.; Yates, J. R. III. Anal. Chem. 2002, 74, 1650-1657.
8. Corthals, G. L.; Wasinger, V. C.; Hochstrasser, D. F.; Sanchez, J. C. Electrophoresis 2000, 21, 1104-1115.
9. Gygi, S. P.; Rist, B.; Gerber, S. A.; Turecek, F.; Gelb, M. H.; Aebersold R. Nat. Biotechnol. 1999, 17, 994-999.
10. Zhou, H.; Ranish, J. A.; Watts, J. D.; Aebersold, R. Nat. Biotechnol. 2002, 20, 512-515.
11. Hardwidge, P. R.; Rodríguez-Escudero, L.; Goode, E.; Donohoe, S.; Eng, J.; Goodlett, D. R.; Aebersold, R.; Finlay, B. B. J. Biol. Chem. 2004, 279, 20127-20136.
12. Martin, D. B.; Gifford, D. R.; Wright, M. E.; Keller, A.; Yi, E.; Goodlet, D. R.; Aebersold, R.; Nelson, P. S. Cancer Res. 2004, 64, 347-355.
13. Wright, M. E.; Eng, J.; Sherman, J.; Hockenbery, D. M.; Nelson, P. S.; Galitski, T.; Aebersold, R.; Genome Biol. 2003, 5, R4.
14. Gevaert, K.; Van Damme, J.; Goethals, M.; Thomas, G. R.; Hoorelbeke, B.; Demol, H.; Martens, L.; Puype, M.; Staes, A.; Vandekerckhove, J. Mol. Cell Proteomics. 2002, 1, 896-903.
15. Matsuo, E.; Toda, C.; Watanabe, M.; Iida, T.; Masuda, T.; Minohata, T.; Ando, E.; Tsunasawa, S.; Nishimura, O. Rapid Commun. Mass Spectrom. 2006, 20, 31-38.
16. Kuyama, H.; Watanabe, M.; Toda, C.; Ando, E.; Tanaka, K.; Nishimura, O. Rapid Commun Mass Spectrom. 2003, 17, 1642-1650.
17. Chelius, D.; Shaler, T. A. Bioconjug. Chem. 2003, 14, 205-211.
18. Ren, D.; Penner, N. A.; Slentz, B. E.; Mirzaei, H.; Regnier, F. J. Proteome Res. 2003, 2, 321-329.
19. Geng, M.; Zhang, X.; Bina, M.; Regnier, F. J. Chrom. B. 2001, 752, 293-306.
20. Zhang, H.; Li, X. J.; Martin, D. B.; Aebersold R. Nat. Biotechnol. 2003, 21, 660-666.
21. Zhang, H.; Yi, E. C.; Li, X. J.; Mallick, P.; Kelly-Spratt, K. S.; Masselon C. D.; Camp, D. G. 2nd; Smith, R. D.; Kemp, C. J.; Aebersold, R. Mol. Cell. Proteomics 2005, 4, 144-155.
22. Geng, M.; Zhang, X.; Bina, M.; Regnier, F. J. Chromatogr. B 2001, 752, 293-306.
23. Betancourt, L.; Gil, J.; Besada, V.; González, L. J.; Fernández-de-Cossío J.; García, L.; Pajón, R.; Sánchez, A.; Alvarez, F.; Padrón, G. J. Proteome Res. 2005, 4, 491-496.
24. Leitner, A.; Lindner, W. J. Mass Spectrom. 2003, 38, 891-899.
25. Foettinger, A.; Leitner, A.; Lindner, W. J. Chromatogr. A 2005, 1079, 187-196.
26. Fernández-de-Cossío J.; González L. J.; Satomi Y.; Betancourt L.; Ramos Y.; et al. Rapid Commun. Mass Spectrom. 2004, 18, 2465-2472.
27. Fernández-de-Cossío J.; González L. J.; Satomi Y.; Betancourt L.; Ramos Y.; et al. Nucleic Acids Res. 2004, 32, W674-W678.
28. Zappacosta, F.; Annan, R. S. Anal. Chem. 2004, 76, 6618-6627.
29. Zhang, X.; Jin, Q. K.; Carr, S. A.; Annan, R. S. Rapid Commun. Mass Spectrom. 2002, 16, 2325-2332.
30. Santoni, W.; Molloy, M.; Rabilloud, T. Electrophoresis. 2000, 21, 1054-1070.
31. Yao, X.; Freas, A.; Ramirez, J.; Demirev, P. A.; Fenselau C. Anal. Chem. 2001, 73, 2836-2842.
32. Takao, T.; Hori, H.; Okamoto, K.; Harada, A.; Karachi, M.; Shimonishi, Y. Rapid Commun. Mass Spectrom. 1991, 5, 312-315.
33. Takao, T.; González, L. J.; Yoshidome, K.; Sato, K.; Asada, T.; Kammei, Y.; Shimonishi, Y. Anal. Chem. 1993, 65, 2394-2399.
34. Shevchenko, A.; Chernuskevich, I.; Ens, W.; Standing, K. G.; Thomson, B.; Wilm, M.; Mann, M. Rapid Commun. Mass Spectrom. 1997, 11, 1015-1024.
35. Kosaka, T.; Takazawa, T.; Nakamura, T. Anal. Chem. 2000, 72, 1179-85.
36. Grubler, A.; Schulze, W. X.; Matthiesen, R.; Mann, M.; Jensen, O. N. Mol. Cell. Proteomics 2005, 4, 1697-1709.
37. Rose, K.; Simona, M. G.; Offord, R. E.; Prior, C. P.; Otto, B. Biochem. J. 1983, 215, 273-278.
38. Rose, K.; Savoy, L. A.; Simona, M. G.; Oxford, R. E. Biochem. J. 1988, 250, 253-259.
39. Yao, X.; Alfonso, C.; Fenselau, C. J. Proteome Res. 2003, 2, 147-152.