Chickpea chlorotic stunt virus: A new polerovirus infecting cool-season food legumes in Ethiopia

Phytopathology

Volumn 96, Issue 5, 2006, Pages 437-446

  Abraham, A D ^a,c   Menzel, W ^a   Lesemann, D E ^a   Varrelmann, M ^b   Vetten, H J ^a  

^a INSTITUTE FOR EPIDEMIOLOGY AND PATHOGEN DIAGNOSTICS   (Germany)

^b UNIVERSITY OF GÖTTINGEN   (Germany)

^c ETHIOPIAN INSTITUTE OF AGRICULTURAL RESEARCH   (Ethiopia)

Author keywords

Aphid transmission; Decoration titer; Electron microscopy; Sequence analysis; Turnip yellows virus

Indexed keywords

APHIDIDAE; APHIS CRACCIVORA; ARACHIS HYPOGAEA; BEET WESTERN YELLOWS VIRUS; BETA VULGARIS SUBSP. VULGARIS; BRASSICA RAPA SUBSP. RAPA; CICER ARIETINUM; FABACEAE; GROUNDNUT ROSETTE ASSISTOR VIRUS; LUTEOVIRIDAE; MURINAE; ORYCTOLAGUS CUNICULUS; POLEROVIRUS; TURNIP YELLOWS VIRUS; VICIA FABA;

EID: 33646356222     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-96-0437     Document Type: Article

References (69)

1. Abraham, A., and Makkouk, K. M. 2002. The incidence and distribution of seed-transmitted viruses in pea and lentil seed lots in Ethiopia. Seed Sci. Technol. 30:567-574.
2. Abraham, A., Makkouk, K. M., Gorfu, D., Lencho, A. G., Ali, K., Tadesse, N., Yusuf, A., and Lencho, A. 2000. Survey of faba bean (Vicia faba L.) virus diseases in Ethiopia. Phytopathol. Mediterr. 39:277-282.
3. Adam, G., Lesemann, D.-E., and Vetten, H. J. 1991. Monoclonal antibodies against tomato spotted wilt virus: Characterization and application. Ann. Appl. Biol. 118:87-104.
4. Ali, K., and Habtewold, T. 1994. Research on insect pests of cool-season food legumes. Pages 367-396 in: Cool-Season Food Legumes in Ethiopia. Proceedings of the First National Cool-Season Food Legumes Review Conference. A. Telaye, G. Bejiga, M. C. Saxena, and M. B. Solh, eds. Institute of Agricultural Research, Addis Ababa, Ethiopia/ICARDA, Aleppo, Syria.
5. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, Z. H., Zhang, Z., Miller, W. W., and Lippman, D. J. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
6. Ashby, J. W. 1984. Bean leaf roll virus. No. 286 in: Descriptions of Plant Viruses. Commonw. Mycol. Inst./Assoc. Appl. Biol., Kew, England.
7. Ashoub, A., Ronde, W., and Prüfer, D. 1998. In planta transcription of a second subgenomic RNA increases the complexity of the subgroup 2 luteovirus genome. Nucleic Acids Res. 26:420-426.
8. Bos, L., Hampton, R. O., and Makkouk, K. M. 1988. Viruses and virus diseases of pea, lentil, faba bean and chickpea. Pages 591-615 in: World Crops: Cool Season Food Legumes. R. I. Summerfield, ed. Kluwer Academic Publishers, Dordrecht/Boston/London.
9. Bosque-Perez, N. A., and Buddenhagen, I. W. 1990. Studies on epidemiology of virus disease of chickpea in California. Plant Dis. 74:372-378.
10. Clark, M. F., and Adams, A. N. 1977. Characteristics of the microplate method of enzyme-linked immunosorbent assay for the detection of plant viruses. J. Gen. Virol. 34:475-483.
11. D'Arcy, C. J., and Domier, L. L. 2005. Luteoviridae. Pages 343-352 in: Virus Taxonomy. VIIIth Report of the International Committee on Taxonomy of Viruses. C. M. Fauquet, M. A. Mayo, J. Maniloff, U. Desselberger, and L. A. Balls, eds. Academic Press, New York.
12. D'Arcy, C. J., Torrance, L., and Martin, R. R. 1989. Discrimination among luteoviruses and their strains by monoclonal antibodies and identification of common epitopes. Phytopathology 79:869-873.
13. Demler, S. A., De Zoeten, G. A., Adams, G., and Harris, K. F. 1995. Pea enation mosaic virus: Properties, and aphid transmission. Pages 303-344 in: The Plant Viruses 5: Polyhedral Virions and Bipartite Genomes. B. D. Harrison and A. F. Murant, eds. Plenum Press, New York and London.
14. Dieffenbach, C. W., and Dveksler, G. A. 1995. PCR Primer: A Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
15. Ellis, P. J., and Wieczorek, A. 1992. Production of monoclonal antibodies to beet western yellows virus and potato leafroll virus and their use in luteovirus detection. Plant Dis. 76:75-78.
16. Food and Agriculture Organization of the United Nations (FAO). 2004. FAO Statistical Databases, http://apps.fao.org/faostat (last accessed in December 2004).
17. Fortass, M. F., and Bos, L. 1991. Survey of faba bean (Vicia faba L.) for viruses in Morocco. Neth. J. Plant Pathol. 97:369-380.
18. Fortass, M. F., van der Wilk, F., Goldbach, R. W., Bos, L., and van den Heuvel, J. F. J. M. 1996. Diversity of viruses infecting faba bean in Morocco and their detection by the polymerase chain reaction. Agronomie 16:61-68.
19. Fortass, M. F., van der Wilk, F., van den Heuvel, J. F. J. M., and Goldbach, R. W. 1997. Molecular evidence for the occurrence of beet western yellows virus on chickpea in Morocco. Eur. J. Plant Pathol. 103:481-484.
20. Franz, A., Makkouk, K. M., Katul, L., and Vetten, H. J. 1996. Monoclonal antibodies for the detection and differentiation of faba bean necrotic yellows virus isolates. Ann. Appl. Biol. 128:255-268.
21. Gibbs, M. J., Armstrong, J. S., and Gibbs, A. J. 2000. Sister-scanning: A Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics 16:573-582.
22. Gorbalenya, A. E., and Koonin, E. V. 1989. Viral proteins containing the purine NTP-binding sequence pattern. Nucleic Acids Res. 17:8413-8439.
23. Gray, S., and Gildow, F. E. 2003. Luteovirus-aphid interactions. Annu. Rev. Phytopathol. 41:539-566.
24. Guilley, H., Catherine, W.-S., Richards, K., Lecoq, H., and Jonard, G. 1994. Nucleotide sequence of cucurbit aphid-borne yellows virus. Virology 202:1012-1017.
25. Gutierrez, P. A., Morgan, D. J., and Havenstein, D. E. 1971. The ecology of Aphis craccivora Koch and subterranean clover stunt virus I. The phenology of aphid populations and the epidemiology of virus on pasture in SE Australia. J. Appl. Ecol. 8:699-721.
26. Hauser, S., Stevens, M., Beuve, M., and Lemaire, O. 2002. Biological properties and molecular characterization of beet chlorosis virus (BChV). Arch. Virol. 147:745-762.
27. Hauser, S., Stevens, M., Mougel, C., Smith, H. G., Fritsch, C., Herrbach, E., and Lemaire, O. 2000. Biological, serological, and molecular variability suggest three distinct polerovirus species infecting beet or rape. Phytopathology 90:460-466.
28. Horn, N. M., Makkouk, K. M., Kumari, S. G., van den Heuvel, J. F. J. M., and Reddy, D. V. R. 1995. Survey of chickpea (Cicer arietinum L.) for chickpea stunt disease and associated viruses in Syria, Turkey and Lebanon. Phytopathol. Mediterr. 34:192-198.
29. Hull, R., and Adams, A. N. 1968. Groundnut rosette and its assistor virus. Ann. Appl.Biol. 62:139-145.
30. Hulluka, M., and Tadesse, N. 1994. Chickpea and lentil disease research in Ethiopia. Pages 346-366 in: Cool-Season Food Legumes in Ethiopia. Proceedings of the First National Cool-Season Food Legumes Review Conference. A. Telaye, G. Bejiga, M. C. Saxena, and M. B. Solh, eds. Institute of Agricultural Research, Addis Ababa, Ethiopia/ICARDA, Aleppo, Syria.
31. Iwaki, M., Roechan, M., Hibino, H., Tochihara, H., and Tantera, D. M. 1980. A persistently aphidborne virus of soybean, Indonesian soybean dwarf virus. Plant Dis. 64:1027-1030.
32. Kamer, G., and Argos, P. 1984. Primary structural comparison of RNA-dependent polymerases from plant, animal and bacterial viruses. Nucleic Acids Res. 12:7269-7282.
33. Katul, L. 1992. Serological and molecular characterization of bean leaf roll virus and faba bean necrotic yellows virus (in German). Ph.D. thesis. University of Göttingen, Germany.
34. Koonin, E. V., and Dolja, V. V. 1993. Evolution and taxonomy of positive-stranded RNA viruses: Implication for comparative analysis of amino acid sequences. Crit. Rev. Biochem. Mol. Biol. 28:375-430.
35. Kumari, S. G., Makkouk, K. M., Altar, N., Ghulam, W., and Lesemann, D.-E. 2004. First report of Chickpea chlorotic dwarf virus infecting spring chickpea in Syria. Plant Dis. 88:424.
36. Laemmli, U. K., and Favre, M. 1973. Maturation of the head of the bacteriophage T4. J. Mol. Biol. 80:575-599.
37. Lecoq, H., Bourdin, D., Wipf-Scheibel, C., Bon, M., Lot, H., and Lemaire, O. 1992. A new yellowing disease of cucurbits caused by a luteovirus, cucurbit aphid-borne yellows virus. Plant Pathol. 41:749-761.
38. Mäkinen, K., Tamm, T., Naess, V., Truve, E., Puurand, U., Munthe, T., and Saarma, M. 1995. Characterization of cocksfoot mottle sobemovirus genomic RNA and sequence comparison with related viruses. J. Virol. 76:2817-2825.
39. Makkouk, K. M., Bashir, M., and Jones, R. 1998. First record of faba bean necrotic yellows virus and Beet western yellows luteovirus affecting lentil and chickpea in Pakistan. Plant Dis. 82:591.
40. Makkouk, K. M., Bos, L., Azzam, O. I., Kumari, S., and Rizkallah, A. 1988. Survey of viruses affecting faba bean in six Arab countries. Arab J. Plant Prot. 6:61-53.
41. Makkouk, K. M., Damsteegt, V., Johnstone, G. R., Katul, L., Lesemann, D.-E., and Kumari, S. G. 1997. Identification and some properties of soybean dwarf luteovirus affecting lentil in Syria. Phytopathol. Mediterr. 36:135-144.
42. Makkouk, K. M., El-Muadhidi, M. A., and Kumari, S. G. 2001. First record of Beet western yellows virus, Chickpea chlorotic dwarf virus and Faba bean necrotic yellows virus affecting faba bean (Vicia faba) crops in Iraq. Plant Pathol. 50:793.
43. Makkouk, K. M., Hamed, A. A., Hussein, M., and Kumari, S. G. 2003. First report of Faba bean necrotic yellows virus (FBNYV) infecting chickpea (Cicer arietinum) and faba bean (Vicia faba) crops in Sudan. Plant Pathol. 52:412.
44. Makkouk, K. M., Kumari, S. G., Hughes, J. d'A., Muniyappa, V., and Kulkarni, N. K. 2003. Other legumes. Pages 447-476 in: Virus and Virus-Like Diseases of Major Crops in Developing Countries. G. Loebenstein and G. Thottappilly, eds. Kluwer Academic Publishers, Dordrecht/Boston/ London.
45. Makkouk, K. M., Kumari, S. G., Shahraeen, N., Fazlali, Y., Farzadfar, S., Ghotbi, T., and Mansouri, R. A. 2003. Identification and seasonal variation of viral diseases of chickpea and lentil in Iran. J. Plant Dis. Prot. 110:157-169.
46. Martin, R. R., Keese, P., Young, M. J., Waterhouse, P. M., and Gerlach, W. L. 1990. Evolution and molecular biology of luteoviruses. Annu. Rev. Phytopathol. 28:341-363.
47. Miller, J. S., and Mayo, M. A. 1991. The location of the 5′ prime end of potato leafroll virus subgenomic coat protein mRNA. J. Gen. Virol. 72:2633-2638.
48. Miller, W. A., Dinesh-Kumar, S. P., and Paul, C. P. 1995. Luteovirus gene expression. Crit. Rev. Plant Sci. 14:179-211.
49. Miller, W. A., Koev, G., and Mohan, B. R. 1997. Are there risks associated with transgenic resistance to luteoviruses? Plant Dis. 81:700-710.
50. Milne, R. G. 1984. Electron microscopy for the identification of plant viruses in in vitro preparations. Methods Virol. VII:87-120.
51. Milne, R. G., and Lesemann, D.-E. 1984. Immunosorbent electron microscopy in plant virus studies. Methods Virol. VIII:85-101.
52. Naidu, R. A., Kimmins, F. M., Deom, C. M., Subrahmanyam, P., Chiyembekeza, A. J., and van der Merwe, P. J. A. 1999. Groundnut rosette: A virus disease affecting groundnut production in sub-Saharan Africa. Plant Dis. 83:700-709.
53. Naidu, R. A., Mayo, M. A., Reddy, S. V., Jolly, C. A., and Torrance, L. 1997. Diversity among coat proteins of luteoviruses associated with chickpea stunt disease in India. Ann. Appl. Biol. 130:37-47.
54. Najar, A., Kumari, S. G., and Makkouk, K. M. 2003. A survey of viruses affecting faba bean (Vicia faba) in Tunisia includes first record of Soybean dwarf virus. Plant Dis. 87:1151.
55. Page, G. D. 1996. Treeview: An application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12:357-358.
56. Reddy, S. V., and Kumar, L. P. 2004. Transmission and properties of a new luteovirus associated with chickpea stunt disease in India. Curr. Sci. 86:1157-1160.
57. Reutenauer, A., Ziegler-Graff, V., Lot, H., Sheidecker, D., Guilley, H., Richards, K., and Jonard, D. 1993. Identification of beet western yellows virus genes implicated in viral replication and particle morphogenesis. Virology 195:692-699.
58. Sambrook, J., Fritsch, E. F., and Maniatis, T. 1989. Molecular Cloning: A Laboratory Manual. 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
59. Schubert, J., Rabenstein, F., Graichen, K., and Richter, K. 1998. Comparison of 5′ end nucleotide sequences of luteoviruses from oil-seed rape and sugar beet. Arch. Phytopathol. Pflanzenschutz. 31:519-530.
60. Scott, K. P., Farmer, M.-J., Robinson, D. J., Torrance, L., and Murant, A. F. 1996. Comparison of the coat protein of groundnut rosette assistor virus with those of other luteoviruses. Ann. Appl. Biol. 128:77-83.
61. Stevens, M., Smith, H. G., and Hatlsworth, P. B. 1994. Identification of a second distinct strain of beet mild yellowing luteovirus using monoclonal antibodies and transmission studies. Ann. Appl. Biol. 125:515-520.
62. Tadesse, N., Ali, K., Gorfu, D., Yusuf, A., Abraham, A., Ayalew, M., Lencho, A., Makkouk, K. M., and Kumari, S. G. 1999. Survey of chickpea and lentil virus diseases in Ethiopia. Phytopathol. Mediterr. 38:149-158.
63. Takanami, Y., and Kubo, S. 1979. Enzyme-assisted purification of two phloem-limited plant viruses: Tobacco necrotic dwarf and potato leafroll. Ann. Appl. Biol. 44:153-159.
64. Tamada, T., and Kojima, M. 1977. Soybean dwarf virus. No. 179 in: Descriptions of Plant Viruses. Commonw. Mycol. Inst./Assoc. Appl. Biol., Kew, England.
65. Telaye, A., Bejiga, G., and Berhe, A. 1994. Role of cool-season food legumes and their production constraints. Pages 3-18 in: Cool-Season Food Legumes in Ethiopia. Proceedings of the First National Cool-Season Food Legumes Review Conference. A. Telaye, G. Bejiga, M. C. Saxena, and M. B. Solh, eds. Institute of Agricultural Research, Addis Ababa, Ethiopia/ICARDA, Aleppo, Syria.
66. Thompson, J. D., Gibson, T. B., Plewniack, F., Jeanmougin, F., and Higgins, D. G. 1997. The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tool. Nucleic Acids Res. 25:4876-4882.
67. van der Wilk, F., Verbeek, M., Dullemans, A. M., and van Den Heuvel, J. F. J. M. 1997. The genome-linked protein of potato leaf roll virus is located downstream of the putative protease domain of the ORF1 product. Virology 234:300-303.
68. Veidt, I., Lot, H., Leiser, M., Scheidecker, D., Guilley, H., Richards, K., and Jonard, G. 1988. Nucleotide sequence of beet western yellows virus RNA. Nucleic Acids Res. 16:9917-9932.
69. Vetten, H. J., Lesemann, D.-E., and Maiss, E. 1992. Serotype A and serotype B strains of bean common mosaic virus are two distinct potyviruses. Arch. Virol. Suppl. 5:415-431.