cDNA-array profiling of melanomas and paired melanocyte cultures

Journal of Cellular Physiology

Volumn 207, Issue 3, 2006, Pages 697-705

  Mischiati, Carlo ^a   Natali, Pier Giorgio ^b   Sereni, Alessia ^a   Sibilio, Leonardo ^b   Giorda, Ezio ^b   Cappellacci, Sandra ^c   Nicotra, Maria Rita ^b,d   Mariani, Giustino ^e   Di Filippo, Franco ^b   Catricalà, Caterina ^e   Gambari, Roberto ^a   Grammatico, Paola ^c   Giacomini, Patrizio ^b  

^a UNIVERSITY OF FERRARA   (Italy)

^b REGINA ELENA NATIONAL CANCER INSTITUTE   (Italy)

^c SAPIENZA UNIVERSITY OF ROME   (Italy)

^d CNR   (Italy)

^e SAN GALLICANO DERMATOLOGICAL INSTITUTE   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

CD9 ANTIGEN; COLLAGEN TYPE 6; COMPLEMENTARY DNA; GENE PRODUCT; STAT2 PROTEIN;

ARTICLE; CELL CULTURE; CELL TRANSFORMATION; CONTROLLED STUDY; DNA FINGERPRINTING; HUMAN; HUMAN CELL; IMMUNOHISTOCHEMISTRY; MELANOCYTE; MELANOMA; METASTASIS; NEVUS CELL; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

ANTIGENS, CD; CELL LINEAGE; CELLS, CULTURED; COLLAGEN TYPE IV; DOWN-REGULATION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, NEOPLASTIC; HUMANS; IMMUNOHISTOCHEMISTRY; MELANOCYTES; MELANOMA; MEMBRANE GLYCOPROTEINS; NEOPLASM STAGING; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; RNA, MESSENGER; STAT2 TRANSCRIPTION FACTOR; UP-REGULATION;

EID: 33646343454     PISSN: 00219541     EISSN: None     Source Type: Journal    
DOI: 10.1002/jcp.20610     Document Type: Article

References (27)

1. Alizadeh A, Ross D, Perou C, van de Rijn M. 2001. Towards a novel classification of human malignancies based on gene expression patterns. J Pathol 195:41-52.
2. Baldi A, Santini D, De Luca A, Paggi M. 2003. cDNA array technology in melanoma: An overview. J Cell Physiol 196:219-223.
3. Bittner M, Meltzer P, Chen Y, Jiang Y, Seftor E, Hendrix M, Radmacher M, Simon R, Yakhini Z, Ben-Dor A, Sampas N, Dougherty E, Wang E, Marincola F, Gooden C, Lueders J, Glatfelter A, Pollock P, Carpten J, Gillanders E, Leja D, Dietrich K, Beaudry C, Berens M, Alberts D, Sondak V. 2000. Molecular classification of cutaneous malignant melanoma by gene expression profiling. Nature 406:536-540.
4. Bowman T, Garcia R, Turkson J, Jove R. 2000. STATs in oncogenesis. Oncogene 19:2474-2488.
5. Brem R, Hildebrandt T, Jarsch M, Van Muijen G, Weidle U. 2001. Identification of metastasis-associated genes by transcriptional profiling of a metastasizing versus a non-metastasizing human melanoma cell line. Anticancer Res 21:1731-1740.
6. Clark E, Golub T, Lander E, Hynes R. 2000. Genomic analysis of metastasis reveals an essential role for RhoC. Nature 406:532-535.
7. Daniels KJ, Boldt HC, Martin JA, Gardner LM, Meyer M, Folberg R. 1996. Expression of type VI collagen in uveal melanoma: Its role in pattern formation and tumor progression. Lab Invest 75:55-66.
8. de Wit N, Burtscher H, Weidle U, Ruiter D, Van Muijen G. 2002. Differentially expressed genes identified in human melanoma cell lines with different metastatic behaviour using high density oligonucleotide arrays. Melanoma Res 12:57-69.
9. de Wit NJ, Rijntjes J, Diepstra JH, van Kuppevelt TH, Weidle UH, Ruiter DJ, van Muijen GN. 2005. Analysis of differential gene expression in human melanocytic tumour lesions by custom made oligonucleotide arrays. Br J Cancer 92:2249-2261.
10. Dooley TP, Curto EV, Davis RL, Grammatico P, Robinson ES, Wilborn TW. 2003. DNA microarrays and likelihood ratio bioinformatic methods: Discovery of human melanocyte biomarkers. Pigment Cell Res 16:245-253.
11. Funakoshi T, Tachibana I, Hoshida Y, Kimura H, Takeda Y, Kijima T, Nishino K, Goto H, Yoneda T, Kumagai T, Osaki T, Hayashi S, Aozasa K, Kawase I. 2003. Expression of tetraspanins in human lung cancer cells: Frequent downregulation of CD9 and its contribution to cell motility in small cell lung cancer. Oncogene 22:674-687.
12. Giorda E, Sibilio L, Martayan A, Moretti S, Venturo I, Mottolese M, Ferrara GB, Cappellacci S, Eibenschutz L, Catricalà C, Grammatico P, Giacomini P. 2003. The antigen processing machinery of human leukocyte antigens: Linked patterns of gene expression in neoplastic cells. Cancer Res 63:4119-4127.
13. Gutgemann A, Golob M, Muller S, Buettner R, Bosserhoff A. 2002. Isolation of invasion-associated cDNAs in melanoma. Arch Dermatol Res 293:283-290.
14. Herlyn M, Kath R, Williams N, Valyi-Nagy I, Rodeck U. 1990. Growth-regulatory factors for normal, premalignant, and malignant human cells in vitro. Adv Cancer Res 54:213-234.
15. Hoek K, Rimm DL, Williams KR, Zhao H, Ariyan S, Lin A, Kluger HM, Berger AJ, Cheng E, Trombetta ES, Wu T, Niinobe M, Yoshikawa K, Hannigan GE, Halaban R. 2004. Expression profiling reveals novel pathways in the transformation of melanocytes to melanomas. Cancer Res 64:5270-5282.
16. Huang F, Adelman J, Jiang H, Goldstein N, Fisher P. 1999. Identification and temporal expression pattern of genes modulated during irreversible growth arrest and terminal differentiation in human melanoma cells. Oncogene 18:3546-3552.
17. Kunz M, Koczan D, Ibrahim S, Gillitzer R, Gross G, Thiesen H. 2002. Differential expression of thrombospondin 2 in primary and metastatic malignant melanoma. Acta Derm Venereol 82:163-169.
18. Loftus S, Chen Y, Gooden G, Ryan J, Birznieks G, Hilliard M, Baxevanis A, Bittner M, Meltzer P, Trent J, Pavan W. 1999. Informatic selection of a neural crest-melanocyte cDNA set for microarray analysis. Proc Natl Acad Sci 96:9277-9280.
19. Nambiar S, Mirmohammadsadegh A, Doroudi R, Gustrau A, Marini A, Roeder G, Ruzicka T, Hengge UR. 2005. Signaling networks in cutaneous melanoma metastasis identified by complementary DNA microarrays. Arch Dermatol 141:165-173.
20. Natali PG, Nicotra MR, Bellocci M, Cavaliere R, Bigotti A. 1985. Distribution of laminin and collagen type IV in benign and malignant lesions of melanocytic origin. Int J Cancer 35:461-467.
21. Picardo M, Maresca V, Eibenschutz L, De Bernardo C, Rinaldi R, Grammatico P. 1999. Correlation between antioxidants and phototypes in melanocytes cultures. A possible link of physiologic and pathologic relevance. J Invest Dermatol 113:424-425.
22. Sherman-Baust CA, Weeraratna AT, Rangel LB, Pizer ES, Cho KR, Schwartz DR, Shock T, Morin PJ. 2003. Remodeling of the extracellular matrix through overexpression of collagen VI contributes to cisplatin resistance in ovarian cancer cells. Cancer Cell 3:377-386.
23. Si Z, Mersey P. 1993. Expression of the neuroglandular antigen and analogues in melanoma. CD9 expression appears inversely related to metastatic potential of melanoma. Int J Cancer 54:37-43.
24. Valery C, Grob J, Verrando P. 2001. Identification by cDNA microarray technology of genes modulated by artificial ultraviolet radiation in normal human melanocytes: Relation to melanocarcinogenesis. J Invest Dermatol 117:1471-1482.
25. van der Velden P, Zuidervaart W, Hurks M, Pavey S, Ksander B, Krijgsman E, Frants R, Tensen C, Willemze R, Jager M, Gruis N. 2003. Expression profiling reveals that methylation of TIMP3 is involved in uveal melanoma development. Int J Cancer 106:472-479.
26. Wang E, Miller L, Ohnmacht G, Mocellin S, Perez-Diez A, Petersen D, Zhao Y, Simon R, Powell J, Asaki E, Alexander H, Duray P, Herlyn M, Restifo N, Liu E, Rosenberg S, Marincola F. 2002. Prospective molecular profiling of melanoma metastases suggests classifiers of immune responsiveness. Cancer Res 62:3581-3586.
27. Weeraratna AT. 2003. Serial analysis of gene expression (SAGE): Advances, analysis and applications to pigment cell research. Pigment Cell Res 16:183-189.