Molecular characterization of polyphosphate (PolyP) operon from Serratia marcescens

Journal of Basic Microbiology

Volumn 46, Issue 2, 2006, Pages 108-115

  Lee, Seung Jin ^a   Lee, Yong Seok ^a   Lee, Young Choon ^a   Choi, Yong Lark ^a  

^a Dong A University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN; ESCHERICHIA COLI PROTEIN; PHOSPHOPROTEIN PHOSPHATASE; PHOSPHOTRANSFERASE; POLYPHOSPHATE; POLYPHOSPHATE KINASE; POLYPHOSPHATE KINASE, E COLI; PROTEIN PHOSPHATASE X; PROTEOME;

ARTICLE; BINDING SITE; CHEMISTRY; DNA SEQUENCE; ESCHERICHIA COLI; GENE LIBRARY; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; MOLECULAR WEIGHT; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OPERON; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROMOTER REGION; REGULATORY SEQUENCE; SERRATIA MARCESCENS;

BACTERIAL PROTEINS; BINDING SITES; CLONING, MOLECULAR; DNA, BACTERIAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENOMIC LIBRARY; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; OPEN READING FRAMES; OPERON; PHOSPHOPROTEIN PHOSPHATASE; PHOSPHOTRANSFERASES (ALCOHOL GROUP ACCEPTOR); PHOSPHOTRANSFERASES (PHOSPHATE GROUP ACCEPTOR); POLYPHOSPHATES; PROMOTER REGIONS (GENETICS); PROTEOME; REGULATORY SEQUENCES, NUCLEIC ACID; SEQUENCE ANALYSIS, DNA; SERRATIA MARCESCENS;

ESCHERICHIA COLI; SERRATIA MARCESCENS;

EID: 33646259965     PISSN: 0233111X     EISSN: 15214028     Source Type: Journal    
DOI: 10.1002/jobm.200510038     Document Type: Article

References (28)

1. AHN, K. and KORNBERG, A., 1990. Polyphosphate kinase from Escherichia coli. Purification and demonstration of a phosphoenzyme intermediate. J. Biol. Chem., 265, 11734-11739.
2. AKIYAMA, M., CROOKE, E. and KORNBERG, A., 1992. The polyphosphate kinase gene of Escherichia coli; isolation and sequence of the ppk gene and membrane location of the protein. J. Biol. Chem., 267, 22556-22561.
3. AKIYAMA, M., CROOKE, E. and KORNBERG, A., 1993. An exopolyphosphatase of Escherichia coli. The enzyme and its ppx gene in a polyphosphate operon. J. Biol. Chem., 268, 633-639.
4. BRADFORD, M. M., 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein dye binding. Anal. Biochem., 72, 248-254.
5. BIRNBAUM, H. C. and DOLY, J., 1979. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acid Res., 7, 1513-1523.
6. BLUM, E., PY, B. J., CARPOUSIS, A. J. and HIGGINS, C. F., 1997. Polyphosphate kinase is a component of the Escherichia coli RNA degradosome. Mol. Microbiol., 26, 387-398.
7. CASTUMA, C. E., HUANG, R., KORNBERG, A. and REUSCH, R. N., 1995. Inorganic polyphosphates in the acquisition of competence in Escherichia coli. J. Biol. Chem., 270, 12980-12983.
8. COX, G. B., ROSENBERG, H., DOWNIE, J. A. and SILVER, S., 1981. Genetic analysis of mutants affected in the Pst inorganic phosphate transport system. J. Bacteriol., 148, 1-9.
9. GAL, S. W., CHOI, Y. J., KIM, C. Y., CHEONG, Y. H., CHOI, Y. J., BAHK, J. D. and CHO, M. J., 1998. Cloning of the 52-kDa chitinase gene from Serratia marcescens KCTC 2172 and its proteolytic cleavage into an active 35-kDa enzyme. FEMS Microbiol. Lett., 60, 151-158.
10. KATO, J., YAMAMOTO, T., YAMADA, K. and OHTAKE, H., 1993. Cloning, sequence and characterization of the polyphosphate kinase-encoding gene (ppk) of Klebsiella aerogenes. Gene, 137, 237-242.
11. KEASLING, J. D., BERTSCH, L. and KORNBERG, A., 1993. Guanosine pentaphosphate phosphohydrolase of Escherichia coli is a long-chain exopolyphosphatase. Proc. Natl. Acad. Sci. USA., 90, 7029-7033.
12. KEASLING, J. D. and HUPF, G. A., 1996. Genetic manipulation of polyphosphate metabolism affects cadmium tolerance in Escherichia coli. Appl. Environ. Microbiol., 62, 743-746.
13. KORNBERG, A., 1995. Inorganic polyphosphate: toward making a forgotten polymer unforgettable. J. Bacteriol., 177, 491-496.
14. KORNBERG, A., RAO, N. N. and AULT-RICHE, D., 1999. Inorganic polyphosphate; A Molecule of many function. Annu. Rev. Biochem., 68, 89-125.
15. KULAEV, I. S., 1979. The biochemistry of inorganic polyphosphates. John Wiley & Sons, Inc., New York, N. Y.
16. KULAKOVSKAYA, T. V., ANDREEVA, N. A., KARPOV, A. V., SIDOROV, I. A. and KULAEV, I. S., 1999. Biochemistry (Moscow)., 64, 990-993.
17. KUMBLE, K. D., AHN, K. and KORNBERG, A., 1996. Phosphohistidyl active sites in polyphosphate kinase of Escherichia coli. Proc. Natl. Acad. Sci. USA., 93, 14391-14395.
18. LAEMMLI, U. K., 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature., 227, 680-685.
19. LEE, S. J., SONG, O. R., LEE, Y. C. and CHOI, Y. L., 2003. Molecular characterization of polyphosphate kinase (ppk) gene from Serratia marscens. Biotechnol. Lett., 25, 191-197.
20. RAO, N. N. and KORNBERG, A., 1996. Inorganic polyphosphate supports resistance and survival of stationary-phase Escherichia coli. J. Bacteriol., 178, 1394-1400.
21. REUSCH, R. N. and SADOFF, H. L., 1988. Putative structure and functions of a poly-beta-hydroxy butyrate/calcium polyphosphate channel in bacterial plasma membranes. Proc. Natl. Acad. Sci. USA., 85, 4176-4180.
22. ROSE, I. A., 1955. Acetate kinase of bacteria (acetokinase). Method Enzymol., 1, 591-593 .
23. SAMBROOK. J., FRITSCH, E. F. and MANIATIS, T., 1989. Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York., USA.
24. SANGER, F., NICKLEN, S. and COULSON, A. R., 1977. DNA sequencing with chain-terminating inhibitor. Proc. Natl. Acad. Sci. USA., 74, 5463-5467.
25. SOUTHERN, E. M., 1975. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Mol. Biol., 98, 503-517.
26. STEPHEN, J., DIEN, V., KEYHANI, S., YANG, C. and KEASLING, J. D., 1997. Manipulation of independent synthesis and degradation of polyphosphate in Escherichia coli for investigation of phosphate secretion from the cell. Appl. Environ. Microbiol., 63, 1689-1695.
27. WHITE, P. J., HUNTER, I. S. and FEWSON, C. A., 1991. Codon usage in Acinetobacter structural genes, p. 251-257. In: The Biology of Acinetobacter (K. J. TOWNER, E. BERGOGNE-BEREZIN, and C. A. FEWSON, Editors). Plenum Press, New York, N. Y.
28. WOOD, H. G. and CLARK, J. E., 1988. Biological aspects of inorganic polyphosphates. Annu. Rev. Biochem., 57, 235-260.