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Volumn 7, Issue , 2006, Pages

Periodicity of SNP distribution around transcription start sites

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE;

EID: 33646190728     PISSN: 14712164     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-7-66     Document Type: Article
Times cited : (18)

References (31)
  • 2
    • 0037373275 scopus 로고    scopus 로고
    • Discovering genotypes underlying human phenotypes: Past successes for mendelian disease, future approaches for complex disease
    • Botstein D, Risch N: Discovering genotypes underlying human phenotypes: past successes for mendelian disease, future approaches for complex disease. Nat Genet 2003, 33(Suppl):228-237.
    • (2003) Nat Genet , vol.33 , Issue.SUPPL. , pp. 228-237
    • Botstein, D.1    Risch, N.2
  • 3
    • 0346373654 scopus 로고    scopus 로고
    • Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium
    • Carlson CS, Eberle MA, Rieder MJ, Yi Q, Kruglyak L, Nickerson DA: Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium. Am J Hum Genet 2004, 74(1):106-120.
    • (2004) Am J Hum Genet , vol.74 , Issue.1 , pp. 106-120
    • Carlson, C.S.1    Eberle, M.A.2    Rieder, M.J.3    Yi, Q.4    Kruglyak, L.5    Nickerson, D.A.6
  • 6
    • 0024658495 scopus 로고
    • Variances of the average numbers of nucleotide substitutions within and between populations
    • Nei M, Jin L: Variances of the average numbers of nucleotide substitutions within and between populations. Mol Biol Evol 1989, 6(3):290-300.
    • (1989) Mol Biol Evol , vol.6 , Issue.3 , pp. 290-300
    • Nei, M.1    Jin, L.2
  • 7
    • 22844442013 scopus 로고    scopus 로고
    • dbQSNP: A database of SNPs in human promoter regions with allele frequency information determined by single-strand conformation polymorphism-based methods
    • Tahira T, Baba S, Higasa K, Kukita Y, Suzuki Y, Sugano S, Hayashi K: dbQSNP: a database of SNPs in human promoter regions with allele frequency information determined by single-strand conformation polymorphism-based methods. Hum Mutat 2005, 26:69-77.
    • (2005) Hum Mutat , vol.26 , pp. 69-77
    • Tahira, T.1    Baba, S.2    Higasa, K.3    Kukita, Y.4    Suzuki, Y.5    Sugano, S.6    Hayashi, K.7
  • 8
    • 84872262063 scopus 로고    scopus 로고
    • dbQSNP Database
    • dbQSNP Database [http://qsnp.gen.kyushu-u.ac.jp]
  • 9
    • 0036081146 scopus 로고    scopus 로고
    • DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs
    • Suzuki Y, Yamashita R, Nakai K, Sugano S: DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs. Nucleic Acids Res 2002, 30(1):328-331.
    • (2002) Nucleic Acids Res , vol.30 , Issue.1 , pp. 328-331
    • Suzuki, Y.1    Yamashita, R.2    Nakai, K.3    Sugano, S.4
  • 12
    • 0022540321 scopus 로고
    • CpG-rich islands and the function of DNA methylation
    • Bird AP: CpG-rich islands and the function of DNA methylation. Nature 1986, 321(6067):209-213.
    • (1986) Nature , vol.321 , Issue.6067 , pp. 209-213
    • Bird, A.P.1
  • 13
    • 0026742792 scopus 로고
    • CpG islands as gene markers in the human genome
    • Larsen F, Gundersen G, Lopez R, Prydz H: CpG islands as gene markers in the human genome. Genomics 1992, 13(4):1095-1107.
    • (1992) Genomics , vol.13 , Issue.4 , pp. 1095-1107
    • Larsen, F.1    Gundersen, G.2    Lopez, R.3    Prydz, H.4
  • 14
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • Rice P, Longden I, Bleasby A: EMBOSS: The European Molecular Biology Open Software Suite. Tirends in Genetics 2000, 16(6):276-277.
    • (2000) Trends in Genetics , vol.16 , Issue.6 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 15
    • 84872264720 scopus 로고    scopus 로고
    • EMBOSS
    • EMBOSS [http://emboss.sourceforge.net/]
  • 16
    • 19344368143 scopus 로고    scopus 로고
    • Genome-wide analysis reveals strong correlation between CpG islands with nearby transcription start sites of genes and their tissue specificity
    • Yamashita R, Suzuki Y, Sugano S, Nakai K: Genome-wide analysis reveals strong correlation between CpG islands with nearby transcription start sites of genes and their tissue specificity. Gene 2005, 35O(2):129-136.
    • (2005) Gene , vol.350 , Issue.2 , pp. 129-136
    • Yamashita, R.1    Suzuki, Y.2    Sugano, S.3    Nakai, K.4
  • 17
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - The BLAST-like alignment tool
    • Kent WJ: BLAT - the BLAST-like alignment tool. Genome Res 2002, 12(4):656-664.
    • (2002) Genome Res , vol.12 , Issue.4 , pp. 656-664
    • Kent, W.J.1
  • 18
    • 0035200120 scopus 로고    scopus 로고
    • Glucocorticoid receptor activation of the IκBα promoter within chromatin
    • Deroo BJ, Archer TK: Glucocorticoid receptor activation of the IκBα promoter within chromatin. Mol Biol Cell 2001, 12(11):3365-3374.
    • (2001) Mol Biol Cell , vol.12 , Issue.11 , pp. 3365-3374
    • Deroo, B.J.1    Archer, T.K.2
  • 19
    • 0002881097 scopus 로고
    • DNase 1- and micrococcal nuclease-hypersensitive sites in the human apolipoprotein B gene are tissue specific
    • Levy-Wilson B, Fortier C, Blackhart BD, McCarthy BJ: DNase 1- and micrococcal nuclease-hypersensitive sites in the human apolipoprotein B gene are tissue specific. Mol Cell Biol 1988, B(1):71-80.
    • (1988) Mol Cell Biol , vol.8 , Issue.1 , pp. 71-80
    • Levy-Wilson, B.1    Fortier, C.2    Blackhart, B.D.3    McCarthy, B.J.4
  • 20
    • 0033681250 scopus 로고    scopus 로고
    • Ordered recruitment of chromatin modifying and general transcription factors to the IFN-Β promoter
    • Agalioti T, Lomvardas S, Parekh B, Yie J, Maniatis T, Thanos D: Ordered recruitment of chromatin modifying and general transcription factors to the IFN-Β promoter. Cell 2000, 103(4):667-678.
    • (2000) Cell , vol.103 , Issue.4 , pp. 667-678
    • Agalioti, T.1    Lomvardas, S.2    Parekh, B.3    Yie, J.4    Maniatis, T.5    Thanos, D.6
  • 21
    • 0030725367 scopus 로고    scopus 로고
    • Nucleosome positioning and transcription-associated chromatin alterations on the human estrogen-repsonsive pS2 promoter
    • Sewack GF, Hansen U: Nucleosome positioning and transcription-associated chromatin alterations on the human estrogen-repsonsive pS2 promoter. J Biol Chem 1997, 272(49):31118-31129.
    • (1997) J Biol Chem , vol.272 , Issue.49 , pp. 31118-31129
    • Sewack, G.F.1    Hansen, U.2
  • 22
    • 20444429051 scopus 로고    scopus 로고
    • Gene splice sites correlate with nucleo-some positions
    • Kogan S, Trifonov EN: Gene splice sites correlate with nucleo-some positions. Gene 2005, 352:57-62.
    • (2005) Gene , vol.352 , pp. 57-62
    • Kogan, S.1    Trifonov, E.N.2
  • 23
    • 0030595138 scopus 로고    scopus 로고
    • Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences
    • Ioshikhes I, Bolshoy A, Derenshteyn K, Borodovsky M, Trifonov EN: Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences. J Mol Biol 1996, 262(2):129-139.
    • (1996) J Mol Biol , vol.262 , Issue.2 , pp. 129-139
    • Ioshikhes, I.1    Bolshoy, A.2    Derenshteyn, K.3    Borodovsky, M.4    Trifonov, E.N.5
  • 24
    • 0029317241 scopus 로고
    • CC dinucleotides contribute to the bending of DNA in chromatin
    • Bolshoy A. CC dinucleotides contribute to the bending of DNA in chromatin. Nat Struct Biol 1995, 2(6):446-448.
    • (1995) Nat Struct Biol , vol.2 , Issue.6 , pp. 446-448
    • Bolshoy, A.1
  • 25
    • 0023001414 scopus 로고
    • Sequence periodicity in chicken nucleosome core DNA
    • Satchwell SC, Drew HR, Travers AA: Sequence periodicity in chicken nucleosome core DNA. J Mol Biol 1986, 191(4):659-675.
    • (1986) J Mol Biol , vol.191 , Issue.4 , pp. 659-675
    • Satchwell, S.C.1    Drew, H.R.2    Travers, A.A.3
  • 26
    • 0033057479 scopus 로고    scopus 로고
    • Periodical distribution of transcription factor sites in promoter regions and connection with chromatin structure
    • Ioshikhes I, Trifonov EN, Zhang MQ: Periodical distribution of transcription factor sites in promoter regions and connection with chromatin structure. Proc Natl Acad Sci USA 1999, 96(6):2891-2895.
    • (1999) Proc Natl Acad Sci USA , vol.96 , Issue.6 , pp. 2891-2895
    • Ioshikhes, I.1    Trifonov, E.N.2    Zhang, M.Q.3
  • 27
    • 84872270010 scopus 로고    scopus 로고
    • DataBase of Transcriptional Start Sites (DBTSS)
    • DataBase of Transcriptional Start Sites (DBTSS) [http://dbtss.hgc.jp/]
  • 28
    • 84872266187 scopus 로고    scopus 로고
    • NCBI Reference Sequence Databases [ftp://ftp.ncbi.nih.gov/genomes/H sapiens/]
    • NCBI Reference Sequence Databases [ftp://ftp.ncbi.nih.gov/genomes/H sapiens/]
  • 29
    • 84872264760 scopus 로고    scopus 로고
    • NCBI dbSNP
    • NCBI dbSNP [http;//www.ncbi.nih.gov/SNP/]
  • 30
    • 84872264594 scopus 로고    scopus 로고
    • BLAT
    • BLAT [http://www.soe.ucsc.edu/~kent/exe/linux/]
  • 31
    • 84872266855 scopus 로고    scopus 로고
    • UCSC Genome Browser
    • UCSC Genome Browser [http://hgdownload.cse.ucsc.edu/goldenPath/panTrol/]


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.