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Volumn 134, Issue 1-2, 2006, Pages 197-204

A long distance RT-PCR able to amplify the Pestivirus genome

Author keywords

Flaviviridae; L RT PCR; Pestivirus

Indexed keywords

COMPLEMENTARY DNA; DNA FRAGMENT; MITOCHONDRIAL DNA; PRIMER DNA; RNA; VIRUS DNA;

EID: 33646156862     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2006.01.005     Document Type: Article
Times cited : (12)

References (42)
  • 1
    • 0035423231 scopus 로고    scopus 로고
    • Evidence for the presence of two novel pestivirus species
    • Avalos-Ramirez R., Orlich M., Thiel H.-J., and Becher P. Evidence for the presence of two novel pestivirus species. Virology 268 (2001) 456-465
    • (2001) Virology , vol.268 , pp. 456-465
    • Avalos-Ramirez, R.1    Orlich, M.2    Thiel, H.-J.3    Becher, P.4
  • 2
    • 0028211009 scopus 로고
    • PCR amplification of up to 35-kb DNA with high fidelity and high yield from λ bacteriophage templates
    • Barnes W.M. PCR amplification of up to 35-kb DNA with high fidelity and high yield from λ bacteriophage templates. Proceedings of the National Academy of Science USA, 91 (1994) 2216-2220
    • (1994) Proceedings of the National Academy of Science USA, 91 , pp. 2216-2220
    • Barnes, W.M.1
  • 3
    • 0031450232 scopus 로고    scopus 로고
    • Genetic heterogeneity of bovine viral diarrhea virus isolated in South Africa
    • Baule C., van Vuuren M., Lowings J.P., and Belák S. Genetic heterogeneity of bovine viral diarrhea virus isolated in South Africa. Virus Res. 52 (1997) 205-220
    • (1997) Virus Res. , vol.52 , pp. 205-220
    • Baule, C.1    van Vuuren, M.2    Lowings, J.P.3    Belák, S.4
  • 4
    • 0035170294 scopus 로고    scopus 로고
    • Pathogenesis of primary respiratory disease induced by isolates from a new genetic cluster of bovine viral diarrhea virus type I
    • Baule C., Kulcsar G., Belak K., Albert M., Mittelholzer C., Soos T., Kucsera L., and Belak S. Pathogenesis of primary respiratory disease induced by isolates from a new genetic cluster of bovine viral diarrhea virus type I. J. Clin. Microbiol. 39 (2001) 146-153
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 146-153
    • Baule, C.1    Kulcsar, G.2    Belak, K.3    Albert, M.4    Mittelholzer, C.5    Soos, T.6    Kucsera, L.7    Belak, S.8
  • 5
    • 0029876718 scopus 로고    scopus 로고
    • Cytopathogenicity of border disease virus is correlated with integration of cellular sequences into the viral genome
    • Becher P., Meyers G., Shannon A.D., and Thiel H.-J. Cytopathogenicity of border disease virus is correlated with integration of cellular sequences into the viral genome. J. Virol. 70 (1996) 2992-2998
    • (1996) J. Virol. , vol.70 , pp. 2992-2998
    • Becher, P.1    Meyers, G.2    Shannon, A.D.3    Thiel, H.-J.4
  • 6
    • 0033568074 scopus 로고    scopus 로고
    • Genetic diversity of pestivirus, identification of novel groups and implications for classification
    • Becher P., Orlich M., Kosmidou A., König M., Baroth M., and Thiel H.-J. Genetic diversity of pestivirus, identification of novel groups and implications for classification. Virology 262 (1999) 64-71
    • (1999) Virology , vol.262 , pp. 64-71
    • Becher, P.1    Orlich, M.2    Kosmidou, A.3    König, M.4    Baroth, M.5    Thiel, H.-J.6
  • 8
    • 0028261194 scopus 로고
    • Effective amplification of long targets from cloned inserts and human genomic DNA
    • Cheng S., Fockler C., Barnes W.M., and Higuchi R. Effective amplification of long targets from cloned inserts and human genomic DNA. PNAS 91 (1994) 5695-5699
    • (1994) PNAS , vol.91 , pp. 5695-5699
    • Cheng, S.1    Fockler, C.2    Barnes, W.M.3    Higuchi, R.4
  • 9
    • 33646151509 scopus 로고    scopus 로고
    • Filatov, D., 1999. PROcessor of SEQuences (Proseq), distributed by the author at: http://helios.bto.ed.ac.uk/evolgen/filatov.
  • 10
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: minimum change for a specific tree topology
    • Fitch W.M. Toward defining the course of evolution: minimum change for a specific tree topology. Syst. Zool. 20 (1971) 406-416
    • (1971) Syst. Zool. , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 12
    • 33646123885 scopus 로고    scopus 로고
    • Giribet, G., 2005. T.N.T.: Tree Analysis Using New Technology, Version 1.0, Beta test v. 0.2. In: Goloboff, P.A., Farris, J.S., Nixon, K. (Eds.), Syst. Biol., vol. 54, pp. 176-178, Program and documentations available at http://www.zmuc.dk/public/phylogeny/TNT.
  • 13
    • 33646135642 scopus 로고    scopus 로고
    • Goloboff, P., Farris, J.S., Nixon, K., 2003. T.N.T.: Tree Analysis Using New Technology, program and documentations available from the authors, and at http://www.zmuc.dk/public/phylogeny.
  • 15
    • 0033990214 scopus 로고    scopus 로고
    • A strategy for cloning infectious molecular clones of retroviruses from serum or plasma
    • Holterman L., Dubbes R., Mullins J., Haaijman J., and Heeney J. A strategy for cloning infectious molecular clones of retroviruses from serum or plasma. J. Virol. Meth. 84 (2000) 37-48
    • (2000) J. Virol. Meth. , vol.84 , pp. 37-48
    • Holterman, L.1    Dubbes, R.2    Mullins, J.3    Haaijman, J.4    Heeney, J.5
  • 16
    • 0032969826 scopus 로고    scopus 로고
    • Epidemiological features and economical importance of bovine virus diarrhoea virus (BVDV) infections
    • Houe H. Epidemiological features and economical importance of bovine virus diarrhoea virus (BVDV) infections. Vet. Microbiol. 64 (1999) 89-107
    • (1999) Vet. Microbiol. , vol.64 , pp. 89-107
    • Houe, H.1
  • 17
    • 33646121860 scopus 로고    scopus 로고
    • Hovenkamp, P., 2004. Review of T.N.T.-Tree Analysis Using New Technology, Version 1.0. In: Goloboff, P., Farris, J.S., Nixon, K., (Eds.), Cladistics, 20, pp. 378-383, available from the authors and from http://www.zmuc.dk/public/phylogeny.
  • 18
    • 11144245282 scopus 로고    scopus 로고
    • Phylogenetic analysis of bovine pestivirus: testing the evolution of clinical symptoms
    • Jones L.R., Cigliano M.M., Zandomeni R.O., and Weber E.L. Phylogenetic analysis of bovine pestivirus: testing the evolution of clinical symptoms. Cladistics 20 (2004) 443-453
    • (2004) Cladistics , vol.20 , pp. 443-453
    • Jones, L.R.1    Cigliano, M.M.2    Zandomeni, R.O.3    Weber, E.L.4
  • 19
    • 0035219903 scopus 로고    scopus 로고
    • Application of single strand conformational polymorphism to the study of bovine viral diarrhea virus isolates
    • Jones L.R., and Weber E.L. Application of single strand conformational polymorphism to the study of bovine viral diarrhea virus isolates. J. Vet. Diagn. Investig. 13 (2001) 48-54
    • (2001) J. Vet. Diagn. Investig. , vol.13 , pp. 48-54
    • Jones, L.R.1    Weber, E.L.2
  • 20
    • 4544248688 scopus 로고    scopus 로고
    • Homologous recombination in bovine pestiviruses. Phylogenetic and statistic evidence
    • Jones L.R., and Weber E.L. Homologous recombination in bovine pestiviruses. Phylogenetic and statistic evidence. Infect. Genet. Evol. 4 (2004) 335-343
    • (2004) Infect. Genet. Evol. , vol.4 , pp. 335-343
    • Jones, L.R.1    Weber, E.L.2
  • 21
    • 0035921181 scopus 로고    scopus 로고
    • Genetic typing of bovine viral diarrhea virus from Argentina
    • Jones L.R., Zandomeni R., and Weber E.L. Genetic typing of bovine viral diarrhea virus from Argentina. Vet. Microbiol. 81 (2001) 367-375
    • (2001) Vet. Microbiol. , vol.81 , pp. 367-375
    • Jones, L.R.1    Zandomeni, R.2    Weber, E.L.3
  • 22
    • 0036707426 scopus 로고    scopus 로고
    • Quasispecies in the 5′-untranslated genomic region of bovine viral diarrhea virus from a single individual
    • Jones L.R., Zandomeni R., and Weber E.L. Quasispecies in the 5′-untranslated genomic region of bovine viral diarrhea virus from a single individual. J. Gen. Virol. 83 (2002) 2161-2168
    • (2002) J. Gen. Virol. , vol.83 , pp. 2161-2168
    • Jones, L.R.1    Zandomeni, R.2    Weber, E.L.3
  • 23
    • 0036196640 scopus 로고    scopus 로고
    • A natural intergenotypic recombinant of Hepatitis C Virus identified in St. Petesburg
    • Kalinina O., Norder H., Mukomolov S., and Magnios L.O. A natural intergenotypic recombinant of Hepatitis C Virus identified in St. Petesburg. J. Virol. 76 (2002) 4034-4043
    • (2002) J. Virol. , vol.76 , pp. 4034-4043
    • Kalinina, O.1    Norder, H.2    Mukomolov, S.3    Magnios, L.O.4
  • 24
    • 2642708375 scopus 로고    scopus 로고
    • Bovine viral diarrhea virus strain Oregon: a novel mechanism for processing of NS2-3 based on point mutations
    • Kümmerer B.M., Stoll D., and Meyers G. Bovine viral diarrhea virus strain Oregon: a novel mechanism for processing of NS2-3 based on point mutations. J. Virol. 72 (1998) 4127-4138
    • (1998) J. Virol. , vol.72 , pp. 4127-4138
    • Kümmerer, B.M.1    Stoll, D.2    Meyers, G.3
  • 26
    • 0033047714 scopus 로고    scopus 로고
    • Purification of full-length enterovirus cDNA by solid phase hybridization capture facilitates amplification of complete genomes
    • Lindberg A.M., and Andersson A. Purification of full-length enterovirus cDNA by solid phase hybridization capture facilitates amplification of complete genomes. J. Virol. Meth. 77 (1999) 131-137
    • (1999) J. Virol. Meth. , vol.77 , pp. 131-137
    • Lindberg, A.M.1    Andersson, A.2
  • 27
    • 0030898765 scopus 로고    scopus 로고
    • Amplification and cloning of complete enterovirus genomes by long distance PCR
    • Lindberg A.M., Polacek C., and Johansson S. Amplification and cloning of complete enterovirus genomes by long distance PCR. J. Virol. Meth. 65 (1997) 191-199
    • (1997) J. Virol. Meth. , vol.65 , pp. 191-199
    • Lindberg, A.M.1    Polacek, C.2    Johansson, S.3
  • 28
    • 17644421360 scopus 로고    scopus 로고
    • A refined long RT-PCR technique to amplify complete viral RNA genome sequences from clinical samples: application to a novel hepatitis C virus variant of genotype 6
    • Lu L., Nakano T., Smallwood G.A., Heffron T.G., Robertson B.H., and Hagedorn C.H. A refined long RT-PCR technique to amplify complete viral RNA genome sequences from clinical samples: application to a novel hepatitis C virus variant of genotype 6. J. Virol. Meth. 126 (2005) 139-148
    • (2005) J. Virol. Meth. , vol.126 , pp. 139-148
    • Lu, L.1    Nakano, T.2    Smallwood, G.A.3    Heffron, T.G.4    Robertson, B.H.5    Hagedorn, C.H.6
  • 29
    • 0029861559 scopus 로고    scopus 로고
    • Recovery of cytopathogenic and noncytopathogenic bovine viral diarrhea viruses from cDNA constructs
    • Meyers G., Tautz N., Becher P., Thiel H.-J., and Kümmerer B.M. Recovery of cytopathogenic and noncytopathogenic bovine viral diarrhea viruses from cDNA constructs. J. Virol. 70 (1996) 8606-8613
    • (1996) J. Virol. , vol.70 , pp. 8606-8613
    • Meyers, G.1    Tautz, N.2    Becher, P.3    Thiel, H.-J.4    Kümmerer, B.M.5
  • 30
    • 0017327860 scopus 로고
    • Viral contamination of bovine foetal serum and cell cultures
    • Nutall P.A., Luther P.D., and Stot E.J. Viral contamination of bovine foetal serum and cell cultures. Nature 266 (1977) 835-837
    • (1977) Nature , vol.266 , pp. 835-837
    • Nutall, P.A.1    Luther, P.D.2    Stot, E.J.3
  • 31
    • 0036147257 scopus 로고    scopus 로고
    • Molecular phylogeny and proposed classification of the simian picornaviruses
    • Oberste M.S., Maher K., and Pallansch M.A. Molecular phylogeny and proposed classification of the simian picornaviruses. J. Virol. 76 (2002) 1244-1251
    • (2002) J. Virol. , vol.76 , pp. 1244-1251
    • Oberste, M.S.1    Maher, K.2    Pallansch, M.A.3
  • 32
    • 0028936474 scopus 로고
    • A proposed division of the pestivirus genus using monoclonal antibodies, supported by cross-neutralisation assays and genetic sequencing
    • Paton D.J., Sands J.J., Lowings J.P., Smith J.E., Ibata G., and Edwards S. A proposed division of the pestivirus genus using monoclonal antibodies, supported by cross-neutralisation assays and genetic sequencing. Vet. Res. 26 (1995) 92-109
    • (1995) Vet. Res. , vol.26 , pp. 92-109
    • Paton, D.J.1    Sands, J.J.2    Lowings, J.P.3    Smith, J.E.4    Ibata, G.5    Edwards, S.6
  • 33
    • 0029017159 scopus 로고
    • Comparison of the p125 coding region of bovine viral diarrhea viruses
    • Pellerin C.S., Moir S., Lecomte J., and Tijsen P. Comparison of the p125 coding region of bovine viral diarrhea viruses. Vet. Microbiol. 45 (1995) 45-57
    • (1995) Vet. Microbiol. , vol.45 , pp. 45-57
    • Pellerin, C.S.1    Moir, S.2    Lecomte, J.3    Tijsen, P.4
  • 34
    • 0036711670 scopus 로고    scopus 로고
    • Cloning of complete genome sets of six dsRNA viruses using an improved cloning method for large dsRNA genes
    • Potgieter A.C., Steele A.D., and vanDijik A.A. Cloning of complete genome sets of six dsRNA viruses using an improved cloning method for large dsRNA genes. J. Gen. Virol. 83 (2002) 2215-2223
    • (2002) J. Gen. Virol. , vol.83 , pp. 2215-2223
    • Potgieter, A.C.1    Steele, A.D.2    vanDijik, A.A.3
  • 35
    • 33646160082 scopus 로고    scopus 로고
    • Flaviviridae: the virus and their replication
    • Fields B.N., Knipe D.M., and Howley P.M. (Eds), Lippincot-Raven, USA
    • Rice C.M. Flaviviridae: the virus and their replication. In: Fields B.N., Knipe D.M., and Howley P.M. (Eds). Fields Virology (Editorial). 3rd ed. (1996), Lippincot-Raven, USA
    • (1996) Fields Virology (Editorial). 3rd ed.
    • Rice, C.M.1
  • 36
    • 0028892534 scopus 로고
    • The genomic sequence of a virulent bovine viral diarrhea virus (BVDV) from the type 2 genotype: detection of a large genomic insertion in a noncytopathic BVDV
    • Ridpath J.F., and Bolin S.R. The genomic sequence of a virulent bovine viral diarrhea virus (BVDV) from the type 2 genotype: detection of a large genomic insertion in a noncytopathic BVDV. Virology 212 (1995) 39-46
    • (1995) Virology , vol.212 , pp. 39-46
    • Ridpath, J.F.1    Bolin, S.R.2
  • 38
    • 0027968068 scopus 로고
    • CLUSTAL W, improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W, improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acid Res. 22 (1994) 4673-4680
    • (1994) Nucl. Acid Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 40
    • 0028083981 scopus 로고
    • Pestiviruses isolated from pig, cattle and sheep can be allocated into at least three genogroups using polymerase chain reaction and restriction endonuclease analysis
    • Vilček S., Herring A.J., Nettleton P.F., Lowings J.P., and Paton D.J. Pestiviruses isolated from pig, cattle and sheep can be allocated into at least three genogroups using polymerase chain reaction and restriction endonuclease analysis. Arch. Virol. 136 (1994) 309-323
    • (1994) Arch. Virol. , vol.136 , pp. 309-323
    • Vilček, S.1    Herring, A.J.2    Nettleton, P.F.3    Lowings, J.P.4    Paton, D.J.5
  • 42
    • 0034969493 scopus 로고    scopus 로고
    • Amplification and cloning of the full-length genome of Japanese encephalitis virus by a novel long RT-PCR protocol in a cosmid vector
    • Zhang F., Huang Q., Ma W., Jiang S., Fan Y., and Zhang H. Amplification and cloning of the full-length genome of Japanese encephalitis virus by a novel long RT-PCR protocol in a cosmid vector. J. Virol. Meth. 96 (2001) 171-182
    • (2001) J. Virol. Meth. , vol.96 , pp. 171-182
    • Zhang, F.1    Huang, Q.2    Ma, W.3    Jiang, S.4    Fan, Y.5    Zhang, H.6


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