-
1
-
-
0033598784
-
Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis
-
Achtman,M. et al. (1999) Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis. Proc. Natl Acad. Sci. USA, 96, 14043-14048.
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 14043-14048
-
-
Achtman, M.1
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F. et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
3
-
-
0032770572
-
Gene order breakpoint evidence in animal mitochondrial phylogeny
-
Blanchette,M. et al. (1999) Gene order breakpoint evidence in animal mitochondrial phylogeny. J. Mol. Evol., 49, 193-203.
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 193-203
-
-
Blanchette, M.1
-
4
-
-
0033529862
-
Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA
-
Campbell,A. et al. (1999) Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA. Proc. Natl Acad. Sci. USA, 96, 9184-9189.
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 9184-9189
-
-
Campbell, A.1
-
5
-
-
0036841722
-
Yersinia pseudotuberculosis harbors a type IV pilus gene cluster that contributes to pathogenicity
-
Collyn,F. et al. (2002) Yersinia pseudotuberculosis harbors a type IV pilus gene cluster that contributes to pathogenicity. Infect Immun., 70, 6196-6205.
-
(2002)
Infect Immun.
, vol.70
, pp. 6196-6205
-
-
Collyn, F.1
-
6
-
-
3343005223
-
YAPI, a new Yersinia pseudotuberculosis pathogenicity island
-
Collyn,F. et al. (2004a) YAPI, a new Yersinia pseudotuberculosis pathogenicity island. Infect. Immun., 72, 4784-4790.
-
(2004)
Infect. Immun.
, vol.72
, pp. 4784-4790
-
-
Collyn, F.1
-
7
-
-
16344370147
-
YAPI, a new pathogenicity island in Enteropathogenic Yersiniae
-
Carniel,E. and Hinnebusch,B.J. (eds), Horizon Biosciences, Wynmondham, Norfolk, UK
-
Collyn,F. et al. (2004b) YAPI, a new pathogenicity island in Enteropathogenic Yersiniae. In Carniel,E. and Hinnebusch,B.J. (eds), Yersinia Molecular and Cellular Biology. Horizon Biosciences, Wynmondham, Norfolk, UK, pp. 307-317.
-
(2004)
Yersinia Molecular and Cellular Biology
, pp. 307-317
-
-
Collyn, F.1
-
8
-
-
0034799370
-
Whole genome plasticity in pathogenic bacteria
-
Dobrindt,U. and Hacker,J. (2001) Whole genome plasticity in pathogenic bacteria. Curr. Opin. Microbiol., 4, 550-557.
-
(2001)
Curr. Opin. Microbiol.
, vol.4
, pp. 550-557
-
-
Dobrindt, U.1
Hacker, J.2
-
9
-
-
10744220624
-
The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens
-
Duchaud,E. et al. (2003) The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens. Nat. Biotechnol., 21, 1307-1313.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 1307-1313
-
-
Duchaud, E.1
-
10
-
-
33646147299
-
-
PHYLIP (Phylogeny Inference Package). (2004) Distributed by the author, Department of Genetics, University of Washington, Seattle
-
Felsenstein,J. (2004) PHYLIP (Phylogeny Inference Package). (2004), Distributed by the author, Department of Genetics, University of Washington, Seattle.
-
(2004)
-
-
Felsenstein, J.1
-
11
-
-
0033231209
-
Whole genome-based phylogenetic analysis of free-living microorganisms
-
Fitz-Gibbon,S.T. and House,C.H. (1999) Whole genome-based phylogenetic analysis of free-living microorganisms. Nucleic Acids Res., 27, 4218-4222.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4218-4222
-
-
Fitz-Gibbon, S.T.1
House, C.H.2
-
12
-
-
0000071395
-
Some distance properties of latent root and vector methods used in multivariate analysis
-
Gower,J.C. (1966) Some distance properties of latent root and vector methods used in multivariate analysis. Biometrika, 53, 325-338.
-
(1966)
Biometrika
, vol.53
, pp. 325-338
-
-
Gower, J.C.1
-
13
-
-
14644413601
-
A genomic island present along the bacterial chromosome of the Parachlamydiaceae UWE25, an obligate amoebal endosymbiont, encodes a potentially functional F-like conjugative DNA transfer system
-
Greub,G. et al. (2004) A genomic island present along the bacterial chromosome of the Parachlamydiaceae UWE25, an obligate amoebal endosymbiont, encodes a potentially functional F-like conjugative DNA transfer system. BMC Microbiol., 4, 48.
-
(2004)
BMC Microbiol.
, vol.4
, pp. 48
-
-
Greub, G.1
-
14
-
-
0033758756
-
Pathogenicity islands and the evolution of microbes
-
Hacker,J. and Kaper,J.B. (2000) Pathogenicity islands and the evolution of microbes. Annu. Rev. Microbiol., 54, 641-679.
-
(2000)
Annu. Rev. Microbiol.
, vol.54
, pp. 641-679
-
-
Hacker, J.1
Kaper, J.B.2
-
15
-
-
0037209075
-
The genome sequence and evolution of baculoviroses
-
Herniou,E.A. et al. (2003) The genome sequence and evolution of baculoviroses. Annu. Rev. Entomol., 48, 211-234.
-
(2003)
Annu. Rev. Entomol.
, vol.48
, pp. 211-234
-
-
Herniou, E.A.1
-
16
-
-
0030305457
-
R: A language for data analysis and graphics
-
Ihaka,R. and Gentleman,R. (1996) R: A language for data analysis and graphics. Comp. Graphical Stat., 5, 299-314.
-
(1996)
Comp. Graphical Stat.
, vol.5
, pp. 299-314
-
-
Ihaka, R.1
Gentleman, R.2
-
17
-
-
0035399931
-
Detecting anomalous gene clusters and pathogenicity islands in diverse bacterial genomes
-
Karlin,S. (2001) Detecting anomalous gene clusters and pathogenicity islands in diverse bacterial genomes. Trends Microbiol., 9, 335-343.
-
(2001)
Trends Microbiol.
, vol.9
, pp. 335-343
-
-
Karlin, S.1
-
18
-
-
0028028028
-
Computational DNA sequence analysis
-
Karlin,S. and Cardon,L.R. (1994) Computational DNA sequence analysis. Annu. Rev. Microbiol., 48, 619-654.
-
(1994)
Annu. Rev. Microbiol.
, vol.48
, pp. 619-654
-
-
Karlin, S.1
Cardon, L.R.2
-
19
-
-
0027958329
-
Molecular evolution of herpesviruses: Genomic and protein sequence comparisons
-
Karlin,S. et al. (1994) Molecular evolution of herpesviruses: Genomic and protein sequence comparisons. J. Virol., 68, 1886-1902.
-
(1994)
J. Virol.
, vol.68
, pp. 1886-1902
-
-
Karlin, S.1
-
20
-
-
0032426005
-
Comparative DNA analysis across diverse genomes
-
Karlin,S. et al. (1998) Comparative DNA analysis across diverse genomes. Annu. Rev. Genet., 32, 185-225.
-
(1998)
Annu. Rev. Genet.
, vol.32
, pp. 185-225
-
-
Karlin, S.1
-
21
-
-
0026784684
-
Nucleotide sequence of the R721 shufflon
-
Kim,S.R. and Komano,T. (1992) Nucleotide sequence of the R721 shufflon. J. Bacteriol., 174, 7053-7058.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 7053-7058
-
-
Kim, S.R.1
Komano, T.2
-
22
-
-
0036397287
-
Proteome-wide analysis of protein function composition reveals the clustering and phylogenetic properties of organisms
-
Ling,L. et al. (2002) Proteome-wide analysis of protein function composition reveals the clustering and phylogenetic properties of organisms. Mol. Phylogenet. Evol., 25, 101-111.
-
(2002)
Mol. Phylogenet. Evol.
, vol.25
, pp. 101-111
-
-
Ling, L.1
-
23
-
-
0035950182
-
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2
-
McClelland,M. et al. (2001) Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. Nature, 413, 852-856.
-
(2001)
Nature
, vol.413
, pp. 852-856
-
-
McClelland, M.1
-
24
-
-
0033766850
-
Toward a comprehensive phylogeny for mammalian and avian herpesviruses
-
McGeoch,D.J. et al. (2000) Toward a comprehensive phylogeny for mammalian and avian herpesviruses. J. Virol., 74, 10401-10406.
-
(2000)
J. Virol.
, vol.74
, pp. 10401-10406
-
-
McGeoch, D.J.1
-
26
-
-
0034682335
-
Lateral gene transfer and the nature of bacterial innovation
-
Ochman,H. et al. (2000) Lateral gene transfer and the nature of bacterial innovation. Nature, 405, 299-304.
-
(2000)
Nature
, vol.405
, pp. 299-304
-
-
Ochman, H.1
-
27
-
-
0030203863
-
TreeView: An application to display phylogenetic trees on personal computers
-
Page,R.D. (1996) TreeView: An application to display phylogenetic trees on personal computers. Comput. Appl. Biosci., 12, 357-358.
-
(1996)
Comput Appl. Biosci.
, vol.12
, pp. 357-358
-
-
Page, R.D.1
-
28
-
-
0042890479
-
Composition, acquisition, and distribution of the Vi exopolysaccharide-encoding Salmonella enterica pathogenicity island SPI-7
-
Pickard,D. et al. (2003) Composition, acquisition, and distribution of the Vi exopolysaccharide-encoding Salmonella enterica pathogenicity island SPI-7. J. Bacteriol., 185, 5055-5065.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 5055-5065
-
-
Pickard, D.1
-
29
-
-
14544277543
-
Variation in the strength of selected codon usage bias among bacteria
-
Sharp,P.M. et al. (2005) Variation in the strength of selected codon usage bias among bacteria. Nucleic Acids Res., 33, 1141-1153.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 1141-1153
-
-
Sharp, P.M.1
-
30
-
-
0032900532
-
Genome phylogeny based on gene content
-
Snel,B. et al. (1999) Genome phylogeny based on gene content. Nat. Genet., 21, 108-110.
-
(1999)
Nat. Genet.
, vol.21
, pp. 108-110
-
-
Snel, B.1
-
31
-
-
0037197886
-
The identification of functional modules from the genomic association of genes
-
Snel,B. et al. (2002) The identification of functional modules from the genomic association of genes. Proc. Natl Acad. Sci. USA, 99, 5890-5895.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 5890-5895
-
-
Snel, B.1
-
32
-
-
0032778047
-
The genomic tree as revealed from whole proteome comparisons
-
Tekaia,F. et al. (1999) The genomic tree as revealed from whole proteome comparisons. Genome Res., 9, 550-557.
-
(1999)
Genome Res.
, vol.9
, pp. 550-557
-
-
Tekaia, F.1
-
33
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson,J.D. et al. (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
-
34
-
-
0348044549
-
Genome trees constructed using five different approaches suggest new major bacterial clades
-
Wolf,Y.I. et al. (2001) Genome trees constructed using five different approaches suggest new major bacterial clades. BMC Evol. Biol., 1, 8.
-
(2001)
BMC Evol. Biol.
, vol.1
, pp. 8
-
-
Wolf, Y.I.1
-
35
-
-
0023462635
-
Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs
-
Wolfe,K.H. et al. (1987) Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc. Natl Acad. Sci. USA, 84, 9054-9058.
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 9054-9058
-
-
Wolfe, K.H.1
|