Functional analysis on the 5′-flanking region of carp fast skeletal myosin heavy chain genes for their expression at different temperatures

Gene

Volumn 372, Issue 1-2, 2006, Pages 82-91

  Kobiyama, Atsushi ^a   Hirayama, Makoto ^a   Muramatsu Uno, Maiko ^a   Watabe, Shugo ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

Carp; Cyprinus carpio; Fast skeletal muscle; Myosin heavy chain; Promoter assay; Ttranscription

Indexed keywords

BINDING PROTEIN; CIS ACTING ELEMENT; DNA FRAGMENT; LUCIFERASE; MYOD PROTEIN; MYOSIN HEAVY CHAIN; NUCLEAR PROTEIN; PROTEIN MEF 2; TRANSCRIPTION FACTOR GATA 1; UNCLASSIFIED DRUG;

ANIMAL TISSUE; ARTICLE; CARP; CONTROLLED STUDY; DNA EXTRACTION; DNA FLANKING REGION; FAST MUSCLE FIBER; FUNCTIONAL GENOMICS; GEL MOBILITY SHIFT ASSAY; GENE CONSTRUCT; GENE DELETION; GENE EXPRESSION REGULATION; GENE INSERTION SEQUENCE; GENE SEQUENCE; MOLECULAR CLONING; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; PROTEIN ISOLATION; SEQUENCE ANALYSIS; SIGNAL DETECTION; TEMPERATURE ACCLIMATIZATION; TEMPERATURE DEPENDENCE; TRANSCRIPTION REGULATION;

5' FLANKING REGION; AMINO ACID SEQUENCE; ANIMALS; CELL NUCLEUS; CLONING, MOLECULAR; FISHES; GENE EXPRESSION REGULATION; GENES, REPORTER; MOLECULAR SEQUENCE DATA; MUSCLE, SKELETAL; MYOSIN HEAVY CHAINS; NONMUSCLE MYOSIN TYPE IIB; PROMOTER REGIONS (GENETICS); REGULATORY SEQUENCES, NUCLEIC ACID; SEQUENCE DELETION; SEQUENCE HOMOLOGY, AMINO ACID; TEMPERATURE;

ANIMALIA; CYPRINUS CARPIO;

EID: 33646036714     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2005.12.006     Document Type: Article

References (34)

1. Allen D.L., Weber J.N., Sycuro L.K., and Leinwand L.A. Myocyte enhancer factor-2 and serum response factor binding elements regulate fast myosin heavy chain transcription in vivo. J. Biol. Chem. 280 (2005) 17126-17134
2. Blough E., Dineen B., and Esser K. Extraction of nuclear proteins from striated muscle tissue. BioTechniques 26 (1999) 202-206
3. Bradford M.M. A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72 (1976) 248-254
4. Cserjesi P., and Olson E.N. Myogenin induces the myocyte-specific enhancer binding factor MEF-2 independently of other muscle-specific gene products. Mol. Cell. Biol. 11 (1991) 4854-4862
5. Davis R.L., Cheng P.-F., Lasser A.B., and Weintraub H. The MyoD DNA binding domain contains a recognition code for muscle-specific gene activation. Cell 60 (1990) 733-746
6. Fry F.E., and Hart J.S. Cruising speed of goldfish in relation to water temperature. J. Fish. Res. Board Can. 7 (1947) 169-175
7. Gauvry L., Ennion S., Hansen E., Butterwoth P., and Goldspink G. The characterization of the 5′ regulatory region of a temperature-induced myosin-heavy-chain gene associated with myotomal muscle growth in the carp. Eur. J. Biochem. 236 (1996) 887-894
8. Gulick J., Kropp K., and Robbins J. The structure of two fast-white myosin heavy chain promoters: a comparative study. J. Biol. Chem. 260 (1985) 14513-14520
9. Guo X.-F., Nakaya M., and Watabe S. Myosin subfragment-1 isoforms having different heavy chain structures from fast skeletal muscle of thermally acclimated carp. J. Biochem. 116 (1994) 728-735
10. Harrington W.F., and Rodgers M.E. Myosin. Annu. Rev. Biochem. 53 (1984) 35-73
11. Heap S.P., Watt P.W., and Goldspink G. Consequence of thermal change on the myofibrillar ATPase of five freshwater teleosts. J. Fish Biol. 26 (1985) 733-738
12. Hirayama Y., and Watabe S. Structural differences in the crossbridge head of temperature-associated myosin subfragment-1 isoforms from carp fast skeletal muscle. Eur. J. Biochem. 246 (1997) 380-387
13. Hwang G.-C., Watabe S., and Hashimoto K. Changes in carp myosin ATPase induced by temperature acclimation. J. Comp. Physiol., B 160 (1990) 233-239
14. Imai J., Hirayama Y., Kikuchi K., and Watabe S. cDNA cloning of myosin heavy chain isoforms from carp fast skeletal muscle and their gene expression associated with temperature acclimation. J. Exp. Biol. 200 (1997) 27-34
15. Iwahori A., Fraidenraich D., and Basilico C. A conserved enhancer element that drives FGF4 gene expression in the embryonic myotomes is synergistically activated by GATA and bHLH proteins. Dev. Biol. 270 (2004) 525-537
16. 2+-activated myofibrillar ATPase activity induced by temperature acclimation. FEBS Lett. 50 (1975) 293-295
17. Kikuchi K., Muramatsu M., Hirayama Y., and Watabe S. Characterization of the carp myosin heavy chain multigene family. Gene 228 (1999) 189-196
18. Kobiyama A., Nihei Y., Hirayama Y., Nakaya M., Kikuchi K., and Watabe S. Expression changes of transcripts for fast skeletal myosin heavy chain isoforms in relation to those of MyoD and MEF2 families during warm temperature acclimation of carp. Fish. Sci. 66 (2000) 761-767
19. Kobiyama A., Nihei Y., and Watabe S. Temporal and special expression patterns of mRNAs encoding myosin heavy chain isoforms in association with those of related transcription factors during temperature acclimation of carp. In: Shimizu N., Aoki T., Hirono I., and Takashima F. (Eds). Aquatic Genomics (2003), Springer-Verlag, Tokyo 167-184
20. Lakich M.M., Diagana T.T., North D.L., and Whalen R.G. MEF2 and Oct-1 bind to two homologous promoter sequence elements and participate in the expression of a skeletal muscle-specific gene. J. Biol. Chem. 273 (1998) 15217-15226
21. Liu Z.J., et al. Isolation and characterization of beta-actin gene of carp (Cyprinus carpio). DNA Seq. 1 (1990) 125-136
22. McGrew M.J., Bogdanova N., Hasegawa K., Hughes S.H., Kitsis R.N., and Rosenthal N. Distinct gene expression patterns in skeletal and cardiac muscle are dependent on common regulatory sequences in the MLC1/3 locus. Mol. Cell. Biol. 16 (1996) 4524-4534
23. Muramatsu-Uno M., Kikuchi K., Suetake H., and Watabe S. The complete nucleotide sequence of carp myosin heavy chain gene. Gene 349 (2005) 143-151
24. Musarò A., McCullagh K.J.A., Naya F.J., Olson E.N., and Rosenthal N. IGF-1 induces myocyte hypertrophy through calcineurin in association with GATA-2 and NF-ATc1. Nature 400 (1999) 581-585
25. Rayment I., et al. Three-dimensional structure of myosin subfragment-1: a molecular motor. Science 261 (1993) 50-58
26. Reggiani C., Bottinelli R., and Stienen G.J.M. Sarcomeric myosin isoforms: fine tuning of a molecular motor. News Physiol. Sci. 15 (2000) 26-33
27. Schiaffino S., and Reggiani C. Molecular diversity of myofibrillar proteins: gene regulation and functional significance. Physiol. Rev. 76 (1996) 371-423
28. Takeda S., et al. A possible regulatory role for conserved promoter motifs in an adult-specific muscle myosin gene from mouse. J. Biol. Chem. 267 (1992) 16957-16967
29. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
30. Tsunoda T., and Takagi T. Estimating transcription factor bindability on DNA. Bioinformatics 15 (1999) 622-630
31. Watabe S. Temperature plasticity of contractile proteins in fish muscle. J. Exp. Biol. 205 (2002) 2231-2236
32. Watabe S., et al. Temperature acclimation induces light meromyosin isoforms with different primary structures in carp fast skeletal muscle. Biochem. Biophys. Res. Commun. 208 (1995) 118-125
33. Watabe S., et al. Carp express fast skeletal myosin isoforms with altered motor functions and structural stabilities to compensate for changes in environmental temperature. J. Therm. Biol. 22 (1998) 375-390
34. Weiss A., Schiaffino S., and Leinwand L.A. Comparative sequence analysis of the complete human sarcomeric myosin heavy chain family: implications for functional diversity. J. Mol. Biol. 290 (1999) 61-75